BAC Information

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BAC

Clone NameB6Ng01-019F09
Chromosome13 (Build37)
Map Location 47,506,341 - 47,661,018
singlet/doubletdoublet
Overlap genenone
Upstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019F09.bB6Ng01-019F09.g
ACCDH852456DH852457
length682995
definitionDH852456|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F09, 5' end.DH852457|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,506,341 - 47,507,020)(47,660,013 - 47,661,018)
sequence
gaattcaaacccgtgctgggtcccttccattgttaaatgcattcccttcc
atgttttaacttgcagtaagctgttcgttcttagggaaaagagttaagaa
tgagaaaaaaaaaaagcaattataatcgaggcaaacctaaactctaaaga
aggcaaggttttagttaatttcattttcacttagagtttttttttcccct
ccaattattactctggatcaaggggaggaaggtttgtatatgtttccccc
cagtgtgtaatttcggcggtgctcacacattatgtgaagtgattatgcta
aatgtcttgttagaaccctagtctagatgtagatgcagggtgagtctatg
agaccccacagagaactggagcaggagggtagagagaaaataaagagtga
ggaggagatgggccagtgggggagagaatgagaaatggaacatactgtgt
gtatgtttttctctctgagacccattagacggcttcttacatcgcacaga
gaacaataacttctgcctttttttttttttacaacttcttagtcatgggc
tttctatcatggttatatgtctttttagacttgtctcagaaaaggaggtt
gctttctaatacgggggtggttgaaaactgatttcagagctctggtttgt
gggcaagacacaaaatggtcatttattattct
gaattccagaagctcaggtgccagttagcctggtgaacaaggtggcaaag
aagagacagacaaggtgaaagataaaaactgacccttaaaatagtcttct
gaccaccacacacacatacacctacacacacacacacacatacacacacg
ggcaggcacacagaggcaggcacacatgggcacatagacacatacacaaa
cacttttttatgtatttaaatgaacagaattcttctagtctcatccatta
gttgcttttttccccttcttttgacagattattattttttgagtactatt
caataaactgcctgtcatcctgaagtctcagggatatcctcttgcctcat
catctagaacctttgttttccatccacatatatttgaaccgcatgtggta
agcactgatctcaaaagagaaaacagaaagataacatccacatggctttc
tccagttccaaagcagcttgacatattacaattgaattgttatgtgtcct
gtagggtagagctgatggtgatataatgatagtaataacagcaaacattt
actgaagaaagtcttcaaccacaatgtgtgtattaataaccactgctctt
tagcatcttgtaaatgaaacaatatcacagaatgcagtaaagttatacag
agaagttttgagtctggtgatacggagtagcagagctagagaaataccca
atgatcaaagaaaaaggaaaatacttctgaaaattaaggtatacagctca
ccttaccccatgtaccacttagtataaattacggtgaccaggatacagta
attttgtcaaaaagataaacaaactgtgtattgaatagaattcagagtcc
tgaaatgggaagacacaaatagaggcagttgattgttgacaagggcataa
gacagtccagtactatgctttaacagatgtatggaacagaatgatgccca
tagacaaaaaaaaaaaaaaaaactctatgtttgatggtataaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47506341_47507020
seq2: B6Ng01-019F09.b_46_727

seq1  GAATTCAAACCCGTGCTGGGTCCCTTCCATTGTTAAATGCATTCCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCGTGCTGGGTCCCTTCCATTGTTAAATGCATTCCCTTCC  50

seq1  ATGTTTTAACTTGCAGTAAGCTGTTCGTTCTTAGGGAAAAGAGTTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAACTTGCAGTAAGCTGTTCGTTCTTAGGGAAAAGAGTTAAGAA  100

seq1  TGAGAAAAAAAAAAAGCAATTATAATCGAGGCAAACCTAAACTCTAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAAAAAAAAGCAATTATAATCGAGGCAAACCTAAACTCTAAAGA  150

seq1  AGGCAAGGTTTTAGTTAATTTCATTTTCACTTAGAGTTTTTTTTTCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGTTTTAGTTAATTTCATTTTCACTTAGAGTTTTTTTTTCCCCT  200

seq1  CCAATTATTACTCTGGATCAAGGGGAGGAAGGTTTGTATATGTTTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATTACTCTGGATCAAGGGGAGGAAGGTTTGTATATGTTTCCCCC  250

seq1  CAGTGTGTAATTTCGGCGGTGCTCACACATTATGTGAAGTGATTATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTAATTTCGGCGGTGCTCACACATTATGTGAAGTGATTATGCTA  300

seq1  AATGTCTTGTTAGAACCCTAGTCTAGATGTAGATGCAGGGTGAGTCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTGTTAGAACCCTAGTCTAGATGTAGATGCAGGGTGAGTCTATG  350

seq1  AGACCCCACAGAGAACTGGAGCAGGAGGGTAGAGAGAAAATAAAGAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCACAGAGAACTGGAGCAGGAGGGTAGAGAGAAAATAAAGAGTGA  400

seq1  GGAGGAGATGGGCCAGTGGGGGAGAGAATGAGAAATGGAACATACTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGATGGGCCAGTGGGGGAGAGAATGAGAAATGGAACATACTGTGT  450

seq1  GTATGTTTTTCTCTCTGAGACCCATTAGACGGCTTCTTACATCGCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTTTCTCTCTGAGACCCATTAGACGGCTTCTTACATCGCACAGA  500

seq1  GAACAATAACTTCTGCCTTTTTTTTTTTTTACAACTTCTTAGTCATGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATAACTTCTGCCTTTTTTTTTTTTTACAACTTCTTAGTCATGGGC  550

seq1  TTTCTATCATGGTTATATGTCTTTTTAGACTTGTCTCAGAAAAGGAGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCATGGTTATATGTCTTTTTAGACTTGTCTCAGAAAAGGAGGTT  600

seq1  GCTTTCTAATAC-GGGGTGGTTGAAAACTGATTTCAGAGCTCTGGTTTGT  649
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTAATACGGGGGTGGTTGAAAACTGATTTCAGAGCTCTGGTTTGT  650

seq1  GGGCAAGACACAAAATGGTCA-TTATTATTCT  680
      ||||||||||||||||||||| ||||||||||
seq2  GGGCAAGACACAAAATGGTCATTTATTATTCT  682

seq1: chr13_47660013_47661018
seq2: B6Ng01-019F09.g_70_1064 (reverse)

seq1  -TTTTATATACATCAAAACATATAGAGTTTTTTTTTTTTTTTTTTTTTGT  49
       |||||||  ||||||   | ||||||    |||||||||||||||||||
seq2  TTTTTATA-CCATCAA---ACATAGAG----TTTTTTTTTTTTTTTTTGT  42

seq1  CTATGGGCATCTTCTTGTTCCATACCATCTGTTGAAGACATAGTACTGGA  99
      ||||||||||| |  ||||||||| |||||||| ||| ||||||||||||
seq2  CTATGGGCATCATTCTGTTCCATA-CATCTGTTAAAG-CATAGTACTGGA  90

seq1  CTGTCTTATGCCCTTGTCAACAATCAACTGCCTCTATTTGTGTCTTCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTATGCCCTTGTCAACAATCAACTGCCTCTATTTGTGTCTTCCCA  140

seq1  TTTCTGGACTCTGAATTCTATTTCAATGACCAGTTTGTTTATCTTTTTGA  199
      |||| ||||||||||||||| ||||||   ||||||||||||||||||||
seq2  TTTCAGGACTCTGAATTCTA-TTCAATACACAGTTTGTTTATCTTTTTGA  189

seq1  CAAAATTACTGTATCCTGGTCACCGTAATTTATACTAAGTGGTACATGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTACTGTATCCTGGTCACCGTAATTTATACTAAGTGGTACATGGG  239

seq1  GTAAGGTGAGCTGTATACCTTAATTTTCAGAAGTATTTTGCCTTTTTCTT  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTAAGGTGAGCTGTATACCTTAATTTTCAGAAGTATTTT-CCTTTTTCTT  288

seq1  TGATCATTGGGTATTTCTCTAGCTCTGCTACTCCGTATCACCAGACTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTGGGTATTTCTCTAGCTCTGCTACTCCGTATCACCAGACTCAA  338

seq1  AACTTCTCTGTATAACTTTACTGCATTCTGTGATATTGTTTCATTTACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCTGTATAACTTTACTGCATTCTGTGATATTGTTTCATTTACAA  388

seq1  GATGCTAAAGAGCAGTGGTTATTAATACACACATTGTGGTTGAAGACTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAAGAGCAGTGGTTATTAATACACACATTGTGGTTGAAGACTTT  438

seq1  CTTCAGTAAATGTTTGCTGTTATTACTATCATTATATCACCATCAGCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTAAATGTTTGCTGTTATTACTATCATTATATCACCATCAGCTCT  488

seq1  ACCCTACAGGACACATAACAATTCAATTGTAATATGTCAAGCTGCTTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACAGGACACATAACAATTCAATTGTAATATGTCAAGCTGCTTTGG  538

seq1  AACTGGAGAAAGCCATGTGGATGTTATCTTTCTGTTTTCTCTTTTGAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGAAAGCCATGTGGATGTTATCTTTCTGTTTTCTCTTTTGAGAT  588

seq1  CAGTGCTTACCACATGCGGTTCAAATATATGTGGATGGAAAACAAAGGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTACCACATGCGGTTCAAATATATGTGGATGGAAAACAAAGGTT  638

seq1  CTAGATGATGAGGCAAGAGGATATCCCTGAGACTTCAGGATGACAGGCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGATGAGGCAAGAGGATATCCCTGAGACTTCAGGATGACAGGCAG  688

seq1  TTTATTGAATAGTACTCAAAAAATAATAATCTGTCAAAAGAAGGGGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAATAGTACTCAAAAAATAATAATCTGTCAAAAGAAGGGGAAAA  738

seq1  AAGCAACTAATGGATGAGACTAGAAGAATTCTGTTCATTTAAATACATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTAATGGATGAGACTAGAAGAATTCTGTTCATTTAAATACATAA  788

seq1  AAAAGTGTTTGTGTATGTGTCTATGTGCCCATGTGTGCCTGCCTCTGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTTTGTGTATGTGTCTATGTGCCCATGTGTGCCTGCCTCTGTGT  838

seq1  GCCTGCCCGTGTGTGTATGTGTGTGTGTGTGTGTAGGTGTATGTGTGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCGTGTGTGTATGTGTGTGTGTGTGTGTAGGTGTATGTGTGTGT  888

seq1  GGTGGTCAGAAGACTATTTTAAGGGTCAGTTTTTATCTTTCACCTTGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCAGAAGACTATTTTAAGGGTCAGTTTTTATCTTTCACCTTGTCT  938

seq1  GTCTCTTCTTTGCCACCTTGTTCACCAGGCTAACTGGCACCTGAGCTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTTTGCCACCTTGTTCACCAGGCTAACTGGCACCTGAGCTTCT  988

seq1  GGAATTC  1006
      |||||||
seq2  GGAATTC  995