BAC Information

Click to search

BAC

Clone NameB6Ng01-019F12
Chromosome13 (Build37)13 (Build37)
Map Location 87,807,083 - 87,807,76134,072,181 - 34,072,460
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC675707, LOC667230, EG435375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019F12.bB6Ng01-019F12.g
ACCDH852462DH852463
length640314
definitionDH852462|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F12, 5' end.DH852463|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,807,083 - 87,807,761)(34,072,181 - 34,072,460)
sequence
gaattcactctcgcacctgcacaagattgctcgcagcacgtaccgggtct
ccacaatttaccacaatcgttgaatatattttgaagttggaggggcggga
tcatatgaggccccataacacaacttccaattccagaaacttcagttagg
gtaatttgtatggactcaaagagtaattgttctgcatcattaagaagagt
aaaattattgaacagggctattccctcatagaagggaggggtggcagaga
aacacatccaacactcctcaaaatcaggggaaccatcctactgtttttta
tctattagggcaagggctgaggcatttaaaatggaaagcaataattcagt
agatagcttagggccaggaagcatggtaggctgataaggagtgatcatct
gaacatgcagggtaattgattccactgtggaggggggcaacctagctgtt
ggttgtggcttggctggggggtgatgtaattgggggttgagtcctatgga
tgccttatgtttattaggaacttcttttaggagtcgtagtataaatataa
ctcctgcgtcccaatcattcttataaaggtgtatcctcttggttagggtg
tgattaaattgttgcctatagaactgtttttccttagagg
ttgggtatctaagagctgaaggggtctgcagccctataggacatcagttc
aacaatatgaacgaaacaatacccccagggctgtgtctctagctgcatag
gtagcagaggatggcctagtcggtcatcaatgggaggagaggcccttggt
cttgtgaagattctatgacccattataggggaatgccagggccaggaagt
aggagtgcctcggttggggagcagggcagggggagggtagacaggaattt
cctggaggaaactaggaaaggggatagcatttgaaatgtaaatgaagaaa
acatctaataaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87807083_87807761
seq2: B6Ng01-019F12.b_46_685 (reverse)

seq1  CCTCTAAGGGATGGTGTAACCCTATTTCCATCAGCTTTACCTCTAAGGGA  50
                                             ||||||||| |
seq2  ---------------------------------------CCTCTAAGGAA  11

seq1  AAACAGTTCTCTTGGCAACAATTTAATCACCCCCTAACCTGGGGGCTACA  100
      |||||||||| | ||||||||||||||||| ||||||||  | || ||||
seq2  AAACAGTTCTATAGGCAACAATTTAATCACACCCTAACCAAGAGGATACA  61

seq1  CCTTTATAAGAATGATTGGGACGCAGGAGTTATATTTATACTACGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAAGAATGATTGGGACGCAGGAGTTATATTTATACTACGACTCC  111

seq1  TAAAAGAAGTTCCTAATAAACATAAGGCATCCATAGGACTCAACCCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGTTCCTAATAAACATAAGGCATCCATAGGACTCAACCCCCAA  161

seq1  TTACATCACCCCCCAGCCAAGCCACAACCAACAGCTAGGTTGCCCCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCACCCCCCAGCCAAGCCACAACCAACAGCTAGGTTGCCCCCCTC  211

seq1  CACAGTGGAATCAATTACCCTGCATGTTCAGATGATCACTCCTTATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGAATCAATTACCCTGCATGTTCAGATGATCACTCCTTATCAGC  261

seq1  CTACCATGCTTCCTGGCCCTAAGCTATCTACTGAATTATTGCTTTCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATGCTTCCTGGCCCTAAGCTATCTACTGAATTATTGCTTTCCATT  311

seq1  TTAAATGCCTCAGCCCTTGCCCTAATAGATAAAAAACAGTAGGATGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCCTCAGCCCTTGCCCTAATAGATAAAAAACAGTAGGATGGTTC  361

seq1  CCCTGATTTTGAGGAGTGTTGGATGTGTTTCTCTGCCACCCCTCCCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGATTTTGAGGAGTGTTGGATGTGTTTCTCTGCCACCCCTCCCTTCT  411

seq1  ATGAGGGAATAGCCCTGTTCAATAATTTTACTCTTCTTAATGATGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGAATAGCCCTGTTCAATAATTTTACTCTTCTTAATGATGCAGAA  461

seq1  CAATTACTCTTTGAGTCCATACAAATTACCCTAACTGAAGTTTCTGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACTCTTTGAGTCCATACAAATTACCCTAACTGAAGTTTCTGGAAT  511

seq1  TGGAAGTTGTGTTATGGGGCCTCATATGATCCCGCCCCTCCAACTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTTGTGTTATGGGGCCTCATATGATCCCGCCCCTCCAACTTCAAA  561

seq1  ATATATTCAACGATTGTGGTAAATTGTGGAGACCCGGTACGTGCTGCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCAACGATTGTGGTAAATTGTGGAGACCCGGTACGTGCTGCGAG  611

seq1  CAATCTTGTGCAGGTGCGAGAGTGAATTC  679
      |||||||||||||||||||||||||||||
seq2  CAATCTTGTGCAGGTGCGAGAGTGAATTC  640

seq1: chr13_34072181_34072460
seq2: B6Ng01-019F12.g_87_388 (reverse)

seq1  TTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCC-------  43
      |||||||||||| ||||||||||||||||||||||||||||||       
seq2  TTTTTATTAGATGTTTTCTTCATTTACATTTCAAATGCTATCCCCTTTCC  50

seq1  ------------TGAAAGTCCCCTATACCCTCCCCCTGCCCTGCTCCCCA  81
                   |||| |||  | |||||||||||||||||||||||||
seq2  TAGTTTCCTCCAGGAAATTCCTGTCTACCCTCCCCCTGCCCTGCTCCCCA  100

seq1  ACCCACCCACTCCCACTTCCTGGCCCTGGCATCCCCCTGTACTGGGGCAT  131
      ||| |  |||||| |||||||||||||||||| ||||| || |||| |||
seq2  ACCGAGGCACTCCTACTTCCTGGCCCTGGCATTCCCCTATAATGGGTCAT  150

seq1  ATAATCTTTACAAGACCAAGGGCCTTTCCTCCCAATGATGGCTGACTAGG  181
      | |||||| |||||||||||||||| |||||||| ||||| | |||||||
seq2  AGAATCTTCACAAGACCAAGGGCCTCTCCTCCCATTGATGACCGACTAGG  200

seq1  CCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGATACTGG  231
      ||||| |||||||| ||||||||||||||||| ||| |||||| || || 
seq2  CCATCCTCTGCTACCTATGCAGCTAGAGACAC-AGCCCTGGGGGTATTGT  249

seq1  TTAGTTCATATTGTTGTTC----CTCTTATAGGGTTGCAGACCCCTTCAG  277
      || |||||||||||||  |     || ||||||| |||||||||||||||
seq2  TTCGTTCATATTGTTGAACTGATGTCCTATAGGGCTGCAGACCCCTTCAG  299

seq1  CTC  280
      |||
seq2  CTC  302