BAC Information

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BAC

Clone NameB6Ng01-020B20
Chromosome13 (Build37)
Map Location 40,362,553 - 40,502,605
singlet/doubletdoublet
Overlap geneOfcc1
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020B20.bB6Ng01-020B20.g
ACCDH853005DH853006
length736918
definitionDH853005|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B20, 5' end.DH853006|Mus musculus domesticus DNA, BAC clone: B6Ng01-020B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,362,553 - 40,363,287)(40,501,689 - 40,502,605)
sequence
gaattcttcctcaacacgttctcatcattcacaatatgcttttggatata
actaaatcatctcacagggaaatgaagagacccactgagaaattcaaagt
agggcacaatacaaatacaataggtttttatgtggctgcgcattaactct
ctgtgatacccagatgaaggagctgacaagcacccttatgtgtgtaggca
tgctcatatatattaaggcaaatggatgtgacatgtaaaataataaattg
gtaaggtggttgtgtagcactcttcatatcccagcatcccttctgacttt
cctaatggtagctgttcggggttgagaatcattgtcagctagaatgtttc
tcatgttattgtttttctgaactgggggagaaaagcattcacacttgcct
tctgcccttcctctcctatcagattttcctatcatttaactcagtatcac
ggagcataatcagagctctaaaactacgccgaatgtgaactttgctcagg
aagccatcctgtgtgcgctcaagcaattccctgggagttgtaagaaagag
agtgaaattacccagccgaggatggcttgtcccttgactcagtgatgcag
tcagtcccttccctttctcatcagccgtgtgacttccaaagaaaggaaat
tcagaagcaactgtctgctactactgtgtgtgtgcatgtgcgtgtgtttc
tgtacacatgttcgtgtcgggggtgggggtggtgtt
gaattcagaggaacatcccaattttccagaagccatctcatttttgaaat
gtgatccctagctatacaaagcagctcactgtaccctgaataccctcggg
ggcaccatcaaaaatatgctgtcttctttagtgaaccacaccatctattt
aaggaaattgctctaaataaattagggagggctctgactattgtttcaag
agtgttttgtttgttacagttctagggagatgactgtcccctcaggccag
atttgtaaaggacataatttcaaaactgagaaaagcaaataatgaatgag
taggctttgggagctacaattcaggcttcagatccttcctccgatctgat
ctgcctgtgggtgttgactggagcttttaggagccctttagctcaattta
tccttcaagctgtcatggctggtgatactcgctcctttttcagtgtaagg
caatgcatgtcccacacttagtcatgctcagataaagatgaatactgtat
gtttcacacctggagagatggttcagcagtcaagagtatttactgctctt
tgaagggaacccaggtttggctcccagaacccacagggaggctcataaca
gtctccaagttccattccaggggatctgagaccctctttttggcttctgt
agccactaggaatacatgtggtatacacatatacatgcaagcaaaacatg
catacaaggaactggatatcatgtgtctctttattcgagtctttaacatg
ggcaaagctgctactagtggtctgtctgctgagagtagtggggtgttctt
accaaagggcacctcttttgtgagctgtgctacctactgaatttgccgac
cccagggcaatggcaatgtttggattatgtgaaaacaagtttgcactggt
catagtgttaggggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40362553_40363287
seq2: B6Ng01-020B20.b_45_780

seq1  GAATTCTTCCTCAACACGTTCTCATCATTCACAATATGCTTTTGGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCAACACGTTCTCATCATTCACAATATGCTTTTGGATATA  50

seq1  ACTAAATCATCTCACAGGGAAATGAAGAGACCCACTGAGAAATTCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATCATCTCACAGGGAAATGAAGAGACCCACTGAGAAATTCAAAGT  100

seq1  AGGGCACAATACAAATACAATAGGTTTTTATGTGGCTGCGCATTAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAATACAAATACAATAGGTTTTTATGTGGCTGCGCATTAACTCT  150

seq1  CTGTGATACCCAGATGAAGGAGCTGACAAGCACCCTTATGTGTGTAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATACCCAGATGAAGGAGCTGACAAGCACCCTTATGTGTGTAGGCA  200

seq1  TGCTCATATATATTAAGGCAAATGGATGTGACATGTAAAATAATAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATATATTAAGGCAAATGGATGTGACATGTAAAATAATAAATTG  250

seq1  GTAAGGTGGTTGTGTAGCACTCTTCATATCCCAGCATCCCTTCTGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTGGTTGTGTAGCACTCTTCATATCCCAGCATCCCTTCTGACTTT  300

seq1  CCTAATGGTAGCTGTTCGGGGTTGAGAATCATTGTCAGCTAGAATGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGTAGCTGTTCGGGGTTGAGAATCATTGTCAGCTAGAATGTTTC  350

seq1  TCATGTTATTGTTTTTCTGAACTGGGGGAGAAAAGCATTCACACTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTATTGTTTTTCTGAACTGGGGGAGAAAAGCATTCACACTTGCCT  400

seq1  TCTGCCCTTCCTCTCCTATCAGATTTTCCTATCATTTAACTCAGTATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTTCCTCTCCTATCAGATTTTCCTATCATTTAACTCAGTATCAC  450

seq1  GGAGCATAATCAGAGCTCTAAAACTACGCCGAATGTGAACTTTGCTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATAATCAGAGCTCTAAAACTACGCCGAATGTGAACTTTGCTCAGG  500

seq1  AAGCCATCCTGTGTGCGCTCAAGCAATTCCCTGGGAGTTGTAAGAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCCTGTGTGCGCTCAAGCAATTCCCTGGGAGTTGTAAGAAAGAG  550

seq1  AGTGAAATTACCCAGCCGAGGATGGCTTGTCCCTTGACTCAGTGATGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTACCCAGCCGAGGATGGCTTGTCCCTTGACTCAGTGATGCAG  600

seq1  TCAGTCCCTTCCC-TTCTCATCAGCCGTGTGACTTCCAAAGAAAGGAAAT  649
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCTTCCCTTTCTCATCAGCCGTGTGACTTCCAAAGAAAGGAAAT  650

seq1  TCAGAAGCAACTGTCTGCTACTACTGTGTGTGTGCATGTGCGTGTGTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCAACTGTCTGCTACTACTGTGTGTGTGCATGTGCGTGTGTTTC  700

seq1  TGTACACATGTTCGTGTCGGGGGTGGGGGTGGTGTT  735
      ||||||||||||||||||||||||||||||||||||
seq2  TGTACACATGTTCGTGTCGGGGGTGGGGGTGGTGTT  736

seq1: chr13_40501689_40502605
seq2: B6Ng01-020B20.g_68_985 (reverse)

seq1  CAGGCCCCTAACACTATGACCAGTGCAAACTTTGTTTTCCATTACTCCAA  50
      |||||||||||||||||||||||||||||| ||||||||   || |||||
seq2  CAGGCCCCTAACACTATGACCAGTGCAAAC-TTGTTTTCACATAATCCAA  49

seq1  ACATTGCCATTGCCCTGGGGTCGGCAAATTCAGTAGGTAGCACAGCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCATTGCCCTGGGGTCGGCAAATTCAGTAGGTAGCACAGCTCAC  99

seq1  AAAAGAGGTGCCCTTTGGTAAGAACACCCCACTACTCTCAGCAGACAGGC  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAAGAGGTGCCCTTTGGTAAGAACACCCCACTACTCTCAGCAGACAGAC  149

seq1  CACTAGTAGCAGCTTTGCCCATGTTAAAGACTCGAATAAAGAGACACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTAGCAGCTTTGCCCATGTTAAAGACTCGAATAAAGAGACACATG  199

seq1  ATATCCAGTT-CTTGTATGCATGTTTTGCTTGCATGTATATGTGTATACC  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAGTTCCTTGTATGCATGTTTTGCTTGCATGTATATGTGTATACC  249

seq1  ACATGTATTCCTAGTGGCTACAGAAGCC-AGAAGAGGGTCTCAGATCCCC  298
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  ACATGTATTCCTAGTGGCTACAGAAGCCAAAAAGAGGGTCTCAGATCCCC  299

seq1  TGGAATGGAACTTGGAGACTGTTATGAGCCTCCCTGTGGGTTCTGGGAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGGAACTTGGAGACTGTTATGAGCCTCCCTGTGGGTTCTGGGAGC  349

seq1  CAAACCTGGGTTCCCTTCAAAGAGCAGTAAATACTCTTGACTGCTGAACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGGGTTCCCTTCAAAGAGCAGTAAATACTCTTGACTGCTGAACC  399

seq1  ATCTCTCCAGGTGTGAAACATACAGTATTCATCTTTATCTGAGCATGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGGTGTGAAACATACAGTATTCATCTTTATCTGAGCATGACT  449

seq1  AAGTGTGGGACATGCATTGCCTTACACTGAAAAAGGAGCGAGTATCACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGGACATGCATTGCCTTACACTGAAAAAGGAGCGAGTATCACCA  499

seq1  GCCATGACAGCTTGAAGGATAAATTGAGCTAAAGGGCTCCTAAAAGCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGACAGCTTGAAGGATAAATTGAGCTAAAGGGCTCCTAAAAGCTCC  549

seq1  AGTCAACACCCACAGGCAGATCAGATCGGAGGAAGGATCTGAAGCCTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACACCCACAGGCAGATCAGATCGGAGGAAGGATCTGAAGCCTGAA  599

seq1  TTGTAGCTCCCAAAGCCTACTCATTCATTATTTGCTTTTCTCAGTTTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTCCCAAAGCCTACTCATTCATTATTTGCTTTTCTCAGTTTTGA  649

seq1  AATTATGTCCTTTACAAATCTGGCCTGAGGGGACAGTCATCTCCCTAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTCCTTTACAAATCTGGCCTGAGGGGACAGTCATCTCCCTAGAA  699

seq1  CTGTAACAAACAAAACACTCTTGAAACAATAGTCAGAGCCCTCCCTAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACAAACAAAACACTCTTGAAACAATAGTCAGAGCCCTCCCTAATT  749

seq1  TATTTAGAGCAATTTCCTTAAATAGATGGTGTGGTTCACTAAAGAAGACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAGCAATTTCCTTAAATAGATGGTGTGGTTCACTAAAGAAGACA  799

seq1  GCATATTTTTGATGGTGCCCCCGAGGGTATTCAGGGTACAGTGAGCTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTTTGATGGTGCCCCCGAGGGTATTCAGGGTACAGTGAGCTGCT  849

seq1  TTGTATAGCTAGGGATCACATTTCAAAAATGAGATGGCTTCTGGAAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGCTAGGGATCACATTTCAAAAATGAGATGGCTTCTGGAAAATT  899

seq1  GGGATGTTCCTCTGAATTC  917
      |||||||||||||||||||
seq2  GGGATGTTCCTCTGAATTC  918