BAC Information

Click to search

BAC

Clone NameB6Ng01-020C24
Chromosome6 (Build37)13 (Build37)
Map Location 18,835,452 - 18,835,968117,007,330 - 117,008,379
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020C24.bB6Ng01-020C24.g
ACCDH853057DH853058
length9481,047
definitionDH853057|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C24, 5' end.DH853058|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(117,007,330 - 117,008,379)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggatcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgtagagtcacgccgagatatttatatatt
gaattccaaaatcacgttgaggacaagtttataatccgtaaaggggataa
tctgtcactggggaagttatcctagaagaaatgtaattctttgaaatatt
tatgctactaaggagaaggagaagaaggaaaaaggatttccaaaaattta
accctcttacttgttcctattcccaccttgccaagagagagaaaaatcca
gctgacaggtttgaaaaaaccaagttgtgatgttcagaaaacaaatgagc
tttggggttagttgagaatggtgtgttccaagtgacttgaaattggggat
atttcctccagtattctttttttctttgctcatttgtttttgttttattt
ttggttatgtttcacagtaaaaaaaaaaaaataaaaaggtaaggtagttt
ccttattccttagaactattttcttttctttttttttttctttttttgtt
tccattttttattaggtatttagctcatttacatttccatattttatttt
cttaaatgatcatttaagtcataagtttctagaaggagaaattggaatgg
ccaattcagtcttgaaaggataaggagaaaaaactctgatctccaactct
agaactcgaaaatttgcaatctcccactgttcccaggacattgtctcagt
gacaatagaagcatcatttcatttgctgcaacaaatactcattaactgcc
tgctatgacttaggttttaagattatatgaatgaagaacataaggcaaaa
tatctggtttaccagaagtcccttcctttctcataggaatggttacaacg
agagtgttaagtctgcagattggaatgtctcacatcacctctccctttct
ctttcactgtagtctctcagcaaaatatcctgtgagcattttttaatgat
ttctttacattcatatttattttacatgcctaagtttagactgcatattg
gtatacattgtatacattgtgatgtacattatactaacataccccagatt
tgttttggagataactgatttgtccattcattcatccatccactacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-020C24.b_45_562 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGATCCAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      ||||||||||| |||||||||||||||||||| |||| ||||||||||||
seq2  AGAAGGTGGACCTCAGAAAATCAAATAACCCCCTTAAAAAATGGGGCTCA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr13_117007330_117008379
seq2: B6Ng01-020C24.g_65_1111 (reverse)

seq1  GGTAGTTGGATGGATGAATGAATGGACAAATCAGTGTATCT-CAACACAT  49
      ||||| ||||||||||||||||||||||||||||| ||||| ||| ||| 
seq2  GGTAG-TGGATGGATGAATGAATGGACAAATCAGT-TATCTCCAAAACAA  48

seq1  ATCTTGGGGTATGTTAGTAT-ATGTACATCACAATGTATACAATGTATAC  98
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATC-TGGGGTATGTTAGTATAATGTACATCACAATGTATACAATGTATAC  97

seq1  CAAATATGCAGTCTTAAACTTAGGCATTGTAAAATAAATATGAATGTAAA  148
      | ||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  C-AATATGCAGTC-TAAACTTAGGCA-TGTAAAATAAATATGAATGTAAA  144

seq1  GAAATCATTAAAAAATGCTCACAGGATATTTTGCTGAGAGACTACAGTGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTAAAAAATGCTCACAGGATATTTTGCTGAGAGACTACAGTGA  194

seq1  AAGAGAAAGGGAGAGGTGATGTGAGACATTCCAATCTGCAGACTTAACAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGGGAGAGGTGATGTGAGACATTCCAATCTGCAGACTTAACAC  244

seq1  TCTCGTTGTAACCATTCCTATGAG-AAGGAAGGGACTTCTGGTAAACCAG  297
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTCGTTGTAACCATTCCTATGAGAAAGGAAGGGACTTCTGGTAAACCAG  294

seq1  ATATTTTGCCTTATGTTCTTCATTCATATAATCTTAAAACCTAAGTCATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCCTTATGTTCTTCATTCATATAATCTTAAAACCTAAGTCATA  344

seq1  GCAGGCAGTTAATGAGTATTTGTTGCAGCAAATGAAATGATGCTTCTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGTTAATGAGTATTTGTTGCAGCAAATGAAATGATGCTTCTATT  394

seq1  GTCACTGAGACAATGTCCTGGGAACAGTGGGAGATTGCAAATTTTCGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAGACAATGTCCTGGGAACAGTGGGAGATTGCAAATTTTCGAGT  444

seq1  TCTAGAGTTGGAGATCAGAGTTTTTTCTCCTTATCCTTTCAAGACTGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGTTGGAGATCAGAGTTTTTTCTCCTTATCCTTTCAAGACTGAAT  494

seq1  TGGCCATTCCAATTTCTCCTTCTAGAAACTTATGACTTAAATGATCATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTCCAATTTCTCCTTCTAGAAACTTATGACTTAAATGATCATTT  544

seq1  AAGAAAATAAAATATGGAAATGTAAATGAGCTAAATACCTAATAAAAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAAAATATGGAAATGTAAATGAGCTAAATACCTAATAAAAAAT  594

seq1  GGAAACAAAAAAAGAAAAAAAAAAAGAAAAGAAAATAGTTCTAAGGAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAAAAAAGAAAAAAAAAAAGAAAAGAAAATAGTTCTAAGGAATA  644

seq1  AGGAAACTACCTTACCTTTTTATTTTTTTTTTTTTACTGTGAAACATAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTACCTTACCTTTTTATTTTTTTTTTTTTACTGTGAAACATAAC  694

seq1  CAAAAATAAAACAAAAACAAATGAGCAAAGAAAAAAAGAATACTGGAGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAAACAAAAACAAATGAGCAAAGAAAAAAAGAATACTGGAGGA  744

seq1  AATATCCCCAATTTCAAGTCACTTGGAACACACCATTCTCAACTAACCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCCAATTTCAAGTCACTTGGAACACACCATTCTCAACTAACCCC  794

seq1  AAAGCTCATTTGTTTTCTGAACATCACAACTTGGTTTTTTCAAACCTGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATTTGTTTTCTGAACATCACAACTTGGTTTTTTCAAACCTGTC  844

seq1  AGCTGGATTTTTCTCTCTCTTGGCAAGGTGGGAATAGGAACAAGTAAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATTTTTCTCTCTCTTGGCAAGGTGGGAATAGGAACAAGTAAGAG  894

seq1  GGTTAAATTTTTGGAAATCCTTTTTCCTTCTTCTCCTTCTCCTTAGTAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATTTTTGGAAATCCTTTTTCCTTCTTCTCCTTCTCCTTAGTAGC  944

seq1  ATAAATATTTCAAAGAATTACATTTCTTCTAGGATAACTTCCCCAGTGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTTCAAAGAATTACATTTCTTCTAGGATAACTTCCCCAGTGAC  994

seq1  AGATTATCCCCTTTACGGATTATAAACTTGTCCTCAACGTGATTTTGGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATCCCCTTTACGGATTATAAACTTGTCCTCAACGTGATTTTGGAA  1044

seq1  TTC  1050
      |||
seq2  TTC  1047