BAC Information

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BAC

Clone NameB6Ng01-020G21
Chromosome13 (Build37)
Map Location 80,536,858 - 80,682,779
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020G21.bB6Ng01-020G21.g
ACCDH853230DH853231
length534782
definitionDH853230|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G21, 5' end.DH853231|Mus musculus domesticus DNA, BAC clone: B6Ng01-020G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,536,858 - 80,537,397)(80,682,223 - 80,682,779)
sequence
tacaagaatttcaaagaagagccaataccaatactccccaaaccattcca
caaaataaaaagagaagcaacactgccaaactcattctatgaagccacaa
tcaccttgatacataaaatacacaaagacacagcaaagaaaaaaatttca
ggctgatttatgaacactgttgcaaaaatactcaataaaatattcataga
atgaatccaggaacacatcaaaaacatcatctaccatgatccaatagctt
catcccagagatgtaaggatggttcaatatatgaaaatctagcaaaataa
tccaccatataaacaaactgaaaggaaaaaaattgcttcaagctccctct
ccctatctccagtagattgcaagtgcatggacagagttgtctacccatag
tcaattttttttttacccagaattgttgctgtctaaaagagctgcagaga
caaaaatggagaagagactgaaggaaaggtagtccagtgaccagcccaac
ttgggatgcatcccatggtggggggttggggggg
gaattcttgtagaagaattgtaggaaggattgagggcctcagaggggata
ggaaatccataagaagaccaacagagtcaacttacctggagacttggagg
ctctcagagactgaactaccaaccaaagagcatatcagggctggaccttg
gcctctatatgtatgtagcagatgtacagctaagtctttatgtgggtacc
tcaacaactggaatagggacaaacctaactctgtttgctgcctgtgaatc
tagttcccctaactgggctgctttgtttggcctcaagggaagaggctgtg
cctagtcctgtagtgaggggccatgtgaggggggaactgggaggagtggg
gataactgccatcgggatgtaaagtgaataagtaaattaattaatgagaa
aaaagagtcaatatggaatttagtactcatcaggaactgataatccatgt
ctgagaatgattaagtgattgggtgctggagaacaggaaacagctagaag
acaggaagtcagaatttaaatccaacatactcttagggtatgacacattc
ctgcgaggcagttaaggagaagagaaagatcagacactgccaactagaaa
cagagccagtagaaggaaggtgggtctaagccatgaaatgcaagtcttat
acactcagaatgccccttaagagtttattatctccaagctgagaaatgag
tcaatctcatgacatctatttcctgttcattgctacagagtttgagaact
ctgaagctccctgcttttacttgaaacccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80536858_80537397
seq2: B6Ng01-020G21.b_46_585

seq1  GAATTCTACAAGAATTTCAAAGAAGAGCCAATACCAATACTCCCCAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAGAATTTCAAAGAAGAGCCAATACCAATACTCCCCAAACC  50

seq1  ATTCCACAAAATAAAAAGAGAAGCAACACTGCCAAACTCATTCTATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAAAATAAAAAGAGAAGCAACACTGCCAAACTCATTCTATGAAG  100

seq1  CCACAATCACCTTGATACATAAAATACACAAAGACACAGCAAAGAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATCACCTTGATACATAAAATACACAAAGACACAGCAAAGAAAAAA  150

seq1  ATTTCAGGCTGATTTATGAACACTGTTGCAAAAATACTCAATAAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGCTGATTTATGAACACTGTTGCAAAAATACTCAATAAAATATT  200

seq1  CATAGAATGAATCCAGGAACACATCAAAAACATCATCTACCATGATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATGAATCCAGGAACACATCAAAAACATCATCTACCATGATCCAA  250

seq1  TAGCTTCATCCCAGAGATGTAAGGATGGTTCAATATATGAAAATCTAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCATCCCAGAGATGTAAGGATGGTTCAATATATGAAAATCTAGCA  300

seq1  AAATAATCCACCATATAAACAAACTGAAAGGAAAAAAATTGCTTCAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCCACCATATAAACAAACTGAAAGGAAAAAAATTGCTTCAAGCT  350

seq1  CCCTCTCCCTATCTCCAGTAGATTGCAAGTGCATGGACAGAGTTGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCTATCTCCAGTAGATTGCAAGTGCATGGACAGAGTTGTCTAC  400

seq1  CCATAGTCAATTTTTTTTTTACCCAGAATTGTTGCTGTCTAAAAGAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTCAATTTTTTTTTTACCCAGAATTGTTGCTGTCTAAAAGAGCTG  450

seq1  CAGAGACAAAAATGGAGAAGAGACTGAAGGAAAGGTAGTCCAGTGACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAAAATGGAGAAGAGACTGAAGGAAAGGTAGTCCAGTGACCAG  500

seq1  CCCAACTTGGGATGCATCCCATGGTGGGGGGTTGGGGGGG  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTGGGATGCATCCCATGGTGGGGGGTTGGGGGGG  540

seq1: chr13_80682223_80682779
seq2: B6Ng01-020G21.g_287_845 (reverse)

seq1  TGTGGGTTTCAAGT-AAAGCAGTGAAGCTTCAGAGTTCTCAAACTCTGTA  49
      |||||||||||||| ||||||| | |||||||||||||||||||||||||
seq2  TGTGGGTTTCAAGTAAAAGCAG-GGAGCTTCAGAGTTCTCAAACTCTGTA  49

seq1  GCAATGAACAGGAAATAGATGTCATGAGATTGACTCATTTCTCAGCTTGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAACAGGAAATAGATGTCATGAGATTGACTCATTTCTCAGCTTGG  99

seq1  AGATAATAAACTCTT-AGGGGCATTCTGAGTGTATAAGACTTGCATTTCA  148
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGATAATAAACTCTTAAGGGGCATTCTGAGTGTATAAGACTTGCATTTCA  149

seq1  TGGCTTAGACCCACCTTCCTTCTACTGGCTCTG-TTCTAGTTGGCAGTGT  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGCTTAGACCCACCTTCCTTCTACTGGCTCTGTTTCTAGTTGGCAGTGT  199

seq1  CTGATCTTTCTCTTCTCCTTAACTGCCTCGCAGGAATGTGTCATACCCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTTTCTCTTCTCCTTAACTGCCTCGCAGGAATGTGTCATACCCTA  249

seq1  AGAGTATGTTGGATTTAAATTCTGACTTCCTGTCTTCTAGCTGTTTCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGTTGGATTTAAATTCTGACTTCCTGTCTTCTAGCTGTTTCCTG  299

seq1  TTCTCCAGCACCCAATCACTTAATCATTCTCAGACATGGATTATCAGTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCACCCAATCACTTAATCATTCTCAGACATGGATTATCAGTTC  349

seq1  CTGATGAGTACTAAATTCCATATTGACTCTTTTTTCTCATTAATTAATTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGTACTAAATTCCATATTGACTCTTTTTTCTCATTAATTAATTT  399

seq1  ACTTATTCACTTTACATCCCGATGGCAGTTATCCCCACTCCTCCCAGTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTCACTTTACATCCCGATGGCAGTTATCCCCACTCCTCCCAGTTC  449

seq1  CCCCCTCACATGGCCCCTCACTACAGGACTAGGCACAGCCTCTTCCCTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCACATGGCCCCTCACTACAGGACTAGGCACAGCCTCTTCCCTTG  499

seq1  AGGCCAAACAAAGCAGCCCAGTTAGGGGAACTAGATTCACAGGCAGCAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAACAAAGCAGCCCAGTTAGGGGAACTAGATTCACAGGCAGCAAA  549

seq1  CAGAGTTAGG  557
      ||||||||||
seq2  CAGAGTTAGG  559