BAC Information

Click to search

BAC

Clone NameB6Ng01-020N10
Chromosome13 (Build37)
Map Location 77,632,936 - 77,748,347
singlet/doubletdoublet
Overlap geneLOC675063
Upstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
Downstream geneD13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N10.bB6Ng01-020N10.g
ACCDH853522DH853523
length1,0701,035
definitionDH853522|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N10, 5' end.DH853523|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,632,936 - 77,633,723)(77,747,300 - 77,748,347)
sequence
gaattctttgtttatctataacccatttttaatagggttatttggttttc
tacagtctaacttcttgagttctttgtatgtattggatattagccctcta
tgaggtttaaagttgctaaagatcttttcccaatctgttggttgcctttt
tgtcttattgacattatcctttgccttacagaagctttgcaattttgtga
ggtcccatttgtccaatcttggtcttacagcacagccattggtgttctat
tcaggaattttccccctctgcccatatcctcaaggctcttccccactttc
tcttctataagtttcagtgtctctggttttatatggagttccttgatcca
cttagacttgagctttatacacggagataagtatggataaattcatattc
ttctacatgctagccgccagttgagccagcaccatttgttgaaaaatgct
ctttatttccactggattgttttagctcctttgtcaaagatcaagtgacc
ataggtgtatgagttcatttctgagtcttcagttttattccattgatcta
tctgtctgtcactgtaccagtaccatgcagtttttataatcataattgct
ctgtagtacagcttgagatcagggatggtgattccttttattgttgagaa
tagtttttgctatcctaggttttttgttatttcatatgaatttgcagact
gccctttctaacactgtgaagaattgagttggaattttgatggggattgc
attgagtctctagattgcttttagcaagatggccatttttactatattgc
tggtgaaatatagtgaaaaatcagttttctggtttctcagaaaattggac
atagtactactagaagatccagaaataccacttctgggcatatacccaga
agatgctccaacttgtaataaggcacatgctcactatgttctagcagctt
attatatagccagaagctgaaaggaccagatgtcctcagcgaggaatgga
tacagaaatgtggtatatttacccatgagtactactcactatttaaaaca
atgattatgaaattctgggc
gaattcaatccttagaacacacatggaagaatgagtgaactgactcctac
atgttattctctaacctacacacatatcatgtgacaccacacacacacac
acacacacacacacacacacacacatccaataagaacacacctgggtata
gcccaatcattgaccacttgcctagcatatgcaagaactagggtttcatt
ccaagttcaaacaagaaaaagcttaaatattttataaatttagatattaa
atagaagaactaagcatcatctatatttatgtgcaatgcaaacatgtcta
ttctcctccagtcttccagtatataaaagtgttaatactgcctaagaaga
cgaattattttaagaatgtcaacagatcaaaatatgtattccacacataa
atattttgatcattgtctctacttgtgaagattaaaagcagtttcttttc
ttcattaaaaatctgtataattaatgtaatttaaatgaattatatatgta
acagaatccatgataaggatccttaagcttcatgacaattatagcacttc
acagtataattgagctgttggtaattaatgacattagacaaaattattta
cctaccacagccgtcttatctctgctttggtttataaaggagaaataatt
ttatataaggataataaataataacaaatgataaaaggtaataggttata
ttttctaattattttattcttgttaaataaaagcactagatattttgaaa
tctctgtcacaagctacatttcacactcataaactgctaagaaaggtttg
tctctaactgctaatacagtgaaaaaggaaatcattttctcaaagattta
ccatgagagaaactaatctaccaatttttcaaataccaatgcacaatatg
ttcaaatctttatctgtagttctccatatagtaatatctgggaaggaaac
attttccacagagtcagagtatcagagtcatgtattctacactcactgaa
agcttcatactaatttatgtgactctattttttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77632936_77633723
seq2: B6Ng01-020N10.b_341_1111

seq1  CTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATATGGAGTTCCTTGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATATGGAGTTCCTTGATCC  50

seq1  ACTTAGACTTGAGCTTTATACACGGAGATAAGTATGGATAAATTCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGACTTGAGCTTTATACACGGAGATAAGTATGGATAAATTCATATT  100

seq1  CTTCTACATGCTAGCCGCCAGTTGAGCCAGCACCATTTGTTGAAAAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACATGCTAGCCGCCAGTTGAGCCAGCACCATTTGTTGAAAAATGC  150

seq1  TCTTTATTTCCACTGGATTGTTTTAGCTCCTTTGTCAAAGATCAAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTCCACTGGATTGTTTTAGCTCCTTTGTCAAAGATCAAGTGAC  200

seq1  CATAGGTGTATGAGTTCATTTCTGAGTCTTCAGTTTTATTCCATTGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGTATGAGTTCATTTCTGAGTCTTCAGTTTTATTCCATTGATCT  250

seq1  ATCTGTCTGTCACTGTACCAGTACCATGCAGTTTTTATAATCATAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGTCACTGTACCAGTACCATGCAGTTTTTATAATCATAATTGC  300

seq1  TCTGTAGTACAGCTTGAGATCAGGGATGGTGATTCCTTTTATTGTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTACAGCTTGAGATCAGGGATGGTGATTCCTTTTATTGTTGAGA  350

seq1  ATAGTTTTTGCTATCCTAGGTTTTTTGTTATTTCATATGAATTTGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTGCTATCCTAGGTTTTTTGTTATTTCATATGAATTTGCAGAC  400

seq1  TGCCCTTTCTAACACTGTGAAGAATTGAGTTGGAATTTTGATGGGGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTCTAACACTGTGAAGAATTGAGTTGGAATTTTGATGGGGATTG  450

seq1  CATTGAGTCTCTAGATTGCTTTTAGCAAGATGGCCATTTTTACTATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTCTCTAGATTGCTTTTAGCAAGATGGCCATTTTTACTATATTG  500

seq1  CTGGTGAAATATAGTGAAAAATCAGTTTTCTGGTTTCTCAGAAAATTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAAATATAGTGAAAAATCAGTTTTCTGGTTTCTCAGAAAATTGGA  550

seq1  CATAGTACTACTAGAAGATCCAGAAATACCACTTCTGGGCATATACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACTACTAGAAGATCCAGAAATACCACTTCTGGGCATATACCCAG  600

seq1  AAGATGCTCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAGCA  650
      |||||||||||||||||||||||| |||||||| |||||||||| |||||
seq2  AAGATGCTCCAACTTGTAATAAGG-CACATGCT-CACTATGTTC-TAGCA  647

seq1  GCCTTATTAATAATAGCCAGAAGCTGGAAAGGACCCAGATGTCCCTCAGC  700
      | |||||||   ||||||||||||| ||||||| |||||||| |||||||
seq2  G-CTTATTA--TATAGCCAGAAGCT-GAAAGGA-CCAGATGT-CCTCAGC  691

seq1  AGAGGAATGGATACAGAAAATGTGGTATATTTACACAATGAAGTACTACT  750
       ||||||||||||||| ||||||||||||||||| | ||| |||||||||
seq2  -GAGGAATGGATACAG-AAATGTGGTATATTTAC-CCATG-AGTACTACT  737

seq1  CAGCTATTAAAAACAATGAATTTATGAAATTCCTGGGC  788
      || ||||| ||||||||||  |||||||||| ||||||
seq2  CA-CTATTTAAAACAATGA--TTATGAAATT-CTGGGC  771

seq1: chr13_77747300_77748347
seq2: B6Ng01-020N10.g_69_1103 (reverse)

seq1  ACAAAAAATAGAGTCAACATATATTTAGTATGAAGCTTTTCAGTGAGTTG  50
      ||||||||||||||| ||||| | |||||||||||| |||||||||| ||
seq2  ACAAAAAATAGAGTC-ACATA-AATTAGTATGAAGC-TTTCAGTGAG-TG  46

seq1  TAGAATACATGACTCTGATAACTTCTGACTTCTGTTGGAAAATGTTTCTA  100
      ||||||||||||||||||||   |||||| |||| |||||||||||||  
seq2  TAGAATACATGACTCTGATA--CTCTGAC-TCTG-TGGAAAATGTTTCCT  92

seq1  TCCCAGATATTTACTATATTGGGAGAAACTACAGATAAAGATTTTGAACA  150
      ||||||||| |||||||||  |||| ||||||||||||||| ||||||||
seq2  TCCCAGATA-TTACTATAT--GGAG-AACTACAGATAAAGA-TTTGAACA  137

seq1  TATTGTGCATTGGTATTTGAAAAATTGGTAGATTAGTTTCTCTCATGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGCATTGGTATTTGAAAAATTGGTAGATTAGTTTCTCTCATGGTA  187

seq1  ATTCTTTTGAGAAAATGATTTCCTTTTTCACTGTATTAGCAGTTAGAGAC  250
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATC-TTTGAGAAAATGATTTCCTTTTTCACTGTATTAGCAGTTAGAGAC  236

seq1  AAACCTTTCTTAGCAGTTTATGAGTGTGAAATGTAGCTTGTGACAGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTCTTAGCAGTTTATGAGTGTGAAATGTAGCTTGTGACAGAGAT  286

seq1  TTC-AAATATCTAGTGCTTTTATTTAACAAGAATAAAATAATTAGAAAAT  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATATCTAGTGCTTTTATTTAACAAGAATAAAATAATTAGAAAAT  336

seq1  ATAACCTATTACCTTTTATCATTTGTTATTATTTATTATCCTTATATAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTATTACCTTTTATCATTTGTTATTATTTATTATCCTTATATAAA  386

seq1  ATTATTTCTCCTTTATAAACCAAAGCAGAGATAAGACGGCTGTGGTAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTCCTTTATAAACCAAAGCAGAGATAAGACGGCTGTGGTAGGT  436

seq1  AAATAATTTTGTCTAATGTCATTAATTACCAACAGCTCAATTATACTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTGTCTAATGTCATTAATTACCAACAGCTCAATTATACTGTG  486

seq1  AAGTGCTATAATTGTCATGAAGCTTAAGGATCCTTATCATGGATTCTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTATAATTGTCATGAAGCTTAAGGATCCTTATCATGGATTCTGTT  536

seq1  ACATATATAATTCATTTAAATTACATTAATTATACAGATTTTTAATGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAATTCATTTAAATTACATTAATTATACAGATTTTTAATGAAG  586

seq1  AAAAGAAACTGCTTTTAATCTTCACAAGTAGAGACAATGATCAAAATATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTGCTTTTAATCTTCACAAGTAGAGACAATGATCAAAATATT  636

seq1  TATGTGTGGAATACATATTTTGATCTGTTGACATTCTTAAAATAATTCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGGAATACATATTTTGATCTGTTGACATTCTTAAAATAATTCGT  686

seq1  CTTCTTAGGCAGTATTAACACTTTTATATACTGGAAGACTGGAGGAGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGGCAGTATTAACACTTTTATATACTGGAAGACTGGAGGAGAAT  736

seq1  AGACATGTTTGCATTGCACATAAATATAGATGATGCTTAGTTCTTCTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTTTGCATTGCACATAAATATAGATGATGCTTAGTTCTTCTATT  786

seq1  TAATATCTAAATTTATAAAATATTTAAGCTTTTTCTTGTTTGAACTTGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTAAATTTATAAAATATTTAAGCTTTTTCTTGTTTGAACTTGGA  836

seq1  ATGAAACCCTAGTTCTTGCATATGCTAGGCAAGTGGTCAATGATTGGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCCTAGTTCTTGCATATGCTAGGCAAGTGGTCAATGATTGGGCT  886

seq1  ATACCCAGGTGTGTTCTTATTGGATGTGTGTGTGTGTGTGTGTGTGTGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGGTGTGTTCTTATTGGATGTGTGTGTGTGTGTGTGTGTGTGTG  936

seq1  TGTGTGTGTGTGGTGTCACATGATATGTGTGTAGGTTAGAGAATAACATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGGTGTCACATGATATGTGTGTAGGTTAGAGAATAACATG  986

seq1  TAGGAGTCAGTTCACTCATTCTTCCATGTGTGTTCTAAGGATTGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTCAGTTCACTCATTCTTCCATGTGTGTTCTAAGGATTGAATTC  1035