BAC Information

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BAC

Clone NameB6Ng01-020N15
Chromosome13 (Build37)
Map Location 108,507,277 - 108,627,002
singlet/doubletdoublet
Overlap geneZswim6
Upstream geneIpo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820
Downstream gene3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, Pde4d, EG668144, LOC621663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N15.bB6Ng01-020N15.g
ACCDH853530DH853531
length1,1071,075
definitionDH853530|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N15, 5' end.DH853531|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,625,879 - 108,627,002)(108,507,277 - 108,508,371)
sequence
gaattctagtggcgttcagctttgttaagtacataaagtttatacctgaa
ggttaaggctccagccagatctaatgtaggaactcagttattattcctat
agctgccattacagagtctcatgtgaagattgagtatttgccttgtagga
cataatatataatttatattttaatgtatgtgcaattgaaccttatatct
aattgagaaaataactgtttttacatatggggtaattgtggggcagcagt
cagtcagtagtgatttgctcataagctatgaagtaggccctgcagacaat
agaagccaacaaatgaaataaaaaaatctgtctttatgatacacttgtac
taccggggaagtgcatgtttgtgactctgactctgtgataaactcgggga
ataaacaatgcacggaaccatgccaaccacagtgtgctgctcacagaccg
tggaactggccacatgtatacacctgacctagagcaaaccaagatttccg
atacagctcgggaaacgcgccttggatatcgttcttggattagtaactct
ttctagaacttagataattttgaaactgttagtgggacaattgagacagt
cattgaataattatctctctacccacagctgttatagtattcagacctag
atgtgggggaggggcagcccattcagaatccttttgggttgctaaagcca
cactgcttcaaaaacaccagattatttaaaaaagaaaaaaaagtggtgtg
tgaatccccatgaagccagaagacttagcctttcacagagcaaggagcgc
ttgcctgtgtgcttcatcacacagagatcagggaagacagagccagcaag
tggaacacttgtctccagtgttagaaagtagacctggcagccggggagat
gtcagtggttaagagcactggctactcttcgagacctgagtttactcctg
catcacatgacagctcacaacactctgtgactcagttcaagggcttctga
caccctcacaccctcaactgacaaaaaacagtaaaattaaaaaaattaat
attgtgtagtgtgtatatgtattagacataattatatcaagaatacttta
aagaaga
gaattcatttatttttttaaataggatcaaggcttttatctacttgacca
catttttcttatgcctgagttttcttctttaaccatttctttttcttagc
atttctttcatatgtttcttgtaacatatttgaatagagcccgggctgat
tccgtttttgattactactccttacttgattgttctctttcaatgaggct
cgcgtccctggaccagccttttgcaagagataaccctgggccaggccagc
ctgagtttcagtcgagcaaaaattctctgtgtgatcttggccctgtgtta
ttttagaaatcagcagttacagattagggactgtatggagcctttcttcc
tcatcctcttcgatatgtggcccaattcaaagacagtgatttttcattta
ttcttagatatctgtcacttgctgatatcaaatggcagaccacccctgtc
gtactttctcccttcctttttcttccttccttacctctttccccttccct
tcttccctccctcttcctctccctctcttccccattttttttccattcct
ccctcctgctttcctttctctctgcccctctcccgcccccacccccccta
caaacatcttgccacctggtccagagtggccttgaactcagttcctctac
tttagcctcctaagtgctagggttacacgcatgtactaccgcacccactt
aaaggttgttttgcatgggtggaggtgtgtaactggtgatcaaactcaga
ccttgtgcctgctaggcaagcactccagcactgagctctgtgcccagcca
ctgcttctcagcttccttctttgcttttggtgaccatccagctttgtgag
agggcagaacccatctaatacggtagttctcagtagtattaatgagatct
cagaccccacgttacaactccattgacaaggaggcttaggcttcctgaga
gcactgagagatgcccatcactagtaagctaccttccttgagagcaagtc
atggcgtcctgtttactattacatctgagctcttttccttccaagtgagt
aacattttacggctctttatgggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108625879_108627002
seq2: B6Ng01-020N15.b_44_1150 (reverse)

seq1  TCTTTTTAAAAATTATTCTTTATATATATATATGTCTATATACATATACA  50
      |||| ||  ||| ||||||| ||||| || |||||||| |||||||||||
seq2  TCTTCTT-TAAAGTATTCTTGATATA-AT-TATGTCTA-ATACATATACA  46

seq1  CACATACACATATATAATTTTTTTTAATGTATACTGGTTTTTTTGTCAGT  100
      ||| |||||| |||| | |||||||||| | |||||  ||||||||||||
seq2  CAC-TACACA-ATATTAATTTTTTTAAT-TTTACTG--TTTTTTGTCAGT  91

seq1  GTGAGGGTGTGAGGGTGTCAGAAGCCCTGGAACTGGAGTCACAGAGTGTT  150
       ||||||||||||||||||||||||||| ||||| |||||||||||||||
seq2  -TGAGGGTGTGAGGGTGTCAGAAGCCCTTGAACT-GAGTCACAGAGTGTT  139

seq1  GTGAGCTGTCATGTGGATGCAGGGAGTTAAACTCAGGTCCTCCGGAAGAG  200
      |||||||||||||| |||||| |||| ||||||||||| |||  ||||||
seq2  GTGAGCTGTCATGT-GATGCA-GGAG-TAAACTCAGGT-CTC--GAAGAG  183

seq1  TAGCCAGTGCTCTTAACCACTGACATCTCCCCGGCTGCCAGGTCTACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTGCTCTTAACCACTGACATCTCCCCGGCTGCCAGGTCTACTTT  233

seq1  CTAACACTGGAGACAAGTGTTCCACTTGCTGGCTCTGTCTTCCCTGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTGGAGACAAGTGTTCCACTTGCTGGCTCTGTCTTCCCTGATCT  283

seq1  CTGTGTGATGAAGCACACAGGCAAGCGCTCCTTGCTCTGTGAAAGGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGATGAAGCACACAGGCAAGCGCTCCTTGCTCTGTGAAAGGCTAA  333

seq1  GTCTTCTGGCTTCATGGGGATTCACACACCACTTTTTTTTCTTTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGGCTTCATGGGGATTCACACACCACTTTTTTTTCTTTTTTAAA  383

seq1  TAATCTGGTGTTTTTGAAGCAGTGTGGCTTTAGCAACCCAAAAGGATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGGTGTTTTTGAAGCAGTGTGGCTTTAGCAACCCAAAAGGATTCT  433

seq1  GAATGGGCTGCCCCTCCCCCACATCTAGGTCTGAATACTATAACAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCTGCCCCTCCCCCACATCTAGGTCTGAATACTATAACAGCTGT  483

seq1  GGGTAGAGAGATAATTATTCAATGACTGTCTCAATTGTCCCACTAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGAGATAATTATTCAATGACTGTCTCAATTGTCCCACTAACAGT  533

seq1  TTCAAAATTATCTAAGTTCTAGAAAGAGTTACTAATCCAAGAACGATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATTATCTAAGTTCTAGAAAGAGTTACTAATCCAAGAACGATATC  583

seq1  CAAGGCGCGTTTCCCGAGCTGTATCGGAAATCTTGGTTTGCTCTAGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCGCGTTTCCCGAGCTGTATCGGAAATCTTGGTTTGCTCTAGGTCA  633

seq1  GGTGTATACATGTGGCCAGTTCCACGGTCTGTGAGCAGCACACTGTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATACATGTGGCCAGTTCCACGGTCTGTGAGCAGCACACTGTGGTT  683

seq1  GGCATGGTTCCGTGCATTGTTTATTCCCCGAGTTTATCACAGAGTCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGTTCCGTGCATTGTTTATTCCCCGAGTTTATCACAGAGTCAGAG  733

seq1  TCACAAACATGCACTTCCCCGGTAGTACAAGTGTATCATAAAGACAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACATGCACTTCCCCGGTAGTACAAGTGTATCATAAAGACAGATT  783

seq1  TTTTTATTTCATTTGTTGGCTTCTATTGTCTGCAGGGCCTACTTCATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTCATTTGTTGGCTTCTATTGTCTGCAGGGCCTACTTCATAGC  833

seq1  TTATGAGCAAATCACTACTGACTGACTGCTGCCCCACAATTACCCCATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGCAAATCACTACTGACTGACTGCTGCCCCACAATTACCCCATAT  883

seq1  GTAAAAACAGTTATTTTCTCAATTAGATATAAGGTTCAATTGCACATACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACAGTTATTTTCTCAATTAGATATAAGGTTCAATTGCACATACA  933

seq1  TTAAAATATAAATTATATATTATGTCCTACAAGGCAAATACTCAATCTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATAAATTATATATTATGTCCTACAAGGCAAATACTCAATCTTC  983

seq1  ACATGAGACTCTGTAATGGCAGCTATAGGAATAATAACTGAGTTCCTACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGACTCTGTAATGGCAGCTATAGGAATAATAACTGAGTTCCTACA  1033

seq1  TTAGATCTGGCTGGAGCCTTAACCTTCAGGTATAAACTTTATGTACTTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTGGCTGGAGCCTTAACCTTCAGGTATAAACTTTATGTACTTAA  1083

seq1  CAAAGCTGAACGCCACTAGAATTC  1124
      ||||||||||||||||||||||||
seq2  CAAAGCTGAACGCCACTAGAATTC  1107

seq1: chr13_108507277_108508371
seq2: B6Ng01-020N15.g_66_1140

seq1  GAATTCATTTATTTTTTTAAATAGGATCAAGGCTTTTATCTACTTGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATTTTTTTAAATAGGATCAAGGCTTTTATCTACTTGACCA  50

seq1  CATTTTTCTTATGCCTGAGTTTTCTTCTTTAACCATTTCTTTTTCTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTTATGCCTGAGTTTTCTTCTTTAACCATTTCTTTTTCTTAGC  100

seq1  ATTTCTTTCATATGTTTCTTGTAACATATTTGAATAGAGCCCGGGCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTCATATGTTTCTTGTAACATATTTGAATAGAGCCCGGGCTGAT  150

seq1  TCCGTTTTTGATTACTACTCCTTACTTGATTGTTCTCTTTCAATGAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTTTTGATTACTACTCCTTACTTGATTGTTCTCTTTCAATGAGGCT  200

seq1  CGCGTCCCTGGACCAGCCTTTTGCAAGAGATAACCCTGGGCCAGGCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTCCCTGGACCAGCCTTTTGCAAGAGATAACCCTGGGCCAGGCCAGC  250

seq1  CTGAGTTTCAGTCGAGCAAAAATTCTCTGTGTGATCTTGGCCCTGTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCAGTCGAGCAAAAATTCTCTGTGTGATCTTGGCCCTGTGTTA  300

seq1  TTTTAGAAATCAGCAGTTACAGATTAGGGACTGTATGGAGCCTTTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAATCAGCAGTTACAGATTAGGGACTGTATGGAGCCTTTCTTCC  350

seq1  TCATCCTCTTCGATATGTGGCCCAATTCAAAGACAGTGATTTTTCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTTCGATATGTGGCCCAATTCAAAGACAGTGATTTTTCATTTA  400

seq1  TTCTTAGATATCTGTCACTTGCTGATATCAAATGGCAGACCACCCCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGATATCTGTCACTTGCTGATATCAAATGGCAGACCACCCCTGTC  450

seq1  GTACTTTCTCCCTTCCTTTTTCTTCCTTCCTTACCTCTTTCCCCTTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTCTCCCTTCCTTTTTCTTCCTTCCTTACCTCTTTCCCCTTCCCT  500

seq1  TCTTCCCTCCCTCTTCCTCTCCCTCTCTTCCCCATTTTTTTTCCATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCCCTCTTCCTCTCCCTCTCTTCCCCATTTTTTTTCCATTCCT  550

seq1  CCCTCCTGCTTTCCTTTCTCTCTGCCCCTCTCCCGCCCCCACCCCCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTGCTTTCCTTTCTCTCTGCCCCTCTCCCGCCCCCACCCCCCCTA  600

seq1  CAAACATCTTGCCACCTGGTCCAGAGTGGCCTTGAACTCAGTTCCTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTTGCCACCTGGTCCAGAGTGGCCTTGAACTCAGTTCCTCTAC  650

seq1  TTTAGCCTCCTAAGTGCTAGGGTTACACGCATGTACTACCGCACCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCCTAAGTGCTAGGGTTACACGCATGTACTACCGCACCCACTT  700

seq1  AAAGGTTGTTTTGCATGGGTGGAGGTGTGTAACTGGTGATCAAACTCAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGGTTGTTTTGCATGGGTGGAGGTGTGTAACTGGTGATCAAACTCA-G  749

seq1  ACCTTGTGCCTGCTAGGCAAGCACTCCAGCACTGAGCTCTGTGCCCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGCCTGCTAGGCAAGCACTCCAGCACTGAGCTCTGTGCCCAGCC  799

seq1  ACTGCTTCTCAGCTTCCTTCTTTGCTTTTGGTGACCATCCAGCTTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCTCAGCTTCCTTCTTTGCTTTTGGTGACCATCCAGCTTTGTGA  849

seq1  GAGGGCAGAACCCATCTAATACGGTAGTTCTCAGTAGTATTAATGAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGAACCCATCTAATACGGTAGTTCTCAGTAGTATTAATGAGATC  899

seq1  TCAGACCCCACGTTACAACTCCATTGACAAAGGAGGCTTAGGGCTTCCTG  950
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TCAGACCCCACGTTACAACTCCATTGAC-AAGGAGGCTTA-GGCTTCCTG  947

seq1  AGAGGCAACTGAGAGATGCCCATCACTAGTAAAGCTACCTTCCTTGCAGA  1000
      ||||   ||||||||||||||||||||||| ||||||||||||||| |||
seq2  AGAG--CACTGAGAGATGCCCATCACTAGT-AAGCTACCTTCCTTG-AGA  993

seq1  GCAAAGTTCATGGCGTCCTGGTTTTACCTATACATTCTGAGCTTCCTATC  1050
      ||||   |||||||||||||  |||||   |||| ||||||| || | ||
seq2  GCAA--GTCATGGCGTCCTG--TTTACTATTACA-TCTGAGC-TCTTTTC  1037

seq1  CTACTCAAGTTGAAGTAAACCATTTTACGGGCTCTTTAATGGGCT  1095
      || | |||||   |||||  |||||||| |||||||| |||||||
seq2  CTTC-CAAGT--GAGTAA--CATTTTAC-GGCTCTTT-ATGGGCT  1075