BAC Information

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BAC

Clone NameB6Ng01-020O24
Chromosome13 (Build37)
Map Location 59,506,707 - 59,644,089
singlet/doubletdoublet
Overlap geneAgtpbp1
Upstream geneRmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
Downstream geneMak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O24.bB6Ng01-020O24.g
ACCDH853595DH853596
length1,1801,016
definitionDH853595|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O24, 5' end.DH853596|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,506,707 - 59,507,889)(59,643,070 - 59,644,089)
sequence
gaattcatcatttttaatagctgagtagtactccattgtataaatgtacc
acattttctgcatccattcctctgttgaaggacatctggtttctttccag
ctaccagaagctatttctaaagatattcaaatatcaaatatggcgtctaa
aaagagttcatccaattgctgctctcaaaaaatcgggtgagggaggactg
agacagctccacactgtttgtggccatggcaccctgtggcctccagttaa
cagtccttactgcttgttatctgttgatgggtgggattagtgcagctacc
attatagaacttaaaggcaatcactgaaacaagattaaacttgtttctct
cctgctgggcatggtggcacatgcctgaaattctagcactagagaggctg
aggcaagaggaagacaagttcaagttcagcctggaatgtatagggatgtg
ctgtctcaaaatcaaatagggactggaaaggtggcgcagtggttaaggcc
acttgctgctcttactgaggaccaggttcagcacacaggcacctaccacg
gaggcttacagccaactggaactctggttccaagagattcaataccctct
tctggcctccacaggcactacacacatgtagtacacatacatacatacat
acatacatacatacatcaaacaagaacaaaatgaaatttttatatttgta
tatatacacatgtatacaatgaatgtctttctacatatattacatataca
tacattcatgcattatatatacatccattctacgtatgtacacagtatac
aggatataaggaccctctgagacccagctcaccctctgccttctccatga
cttggtttcatcctcatgatccactaacatagctacagcacttccttcac
aactatatcctgcttccacacagcaaatgtatatacacccaaagccagag
catagtcacatgaccacctttagcaagcaacggggtttttcatgaaggtc
ctgcctgctgctggtacctccatctctttagtcctctgggtaacacctgg
tataaattcgattttttacttcctgaccattccccagctatccaagagtt
ttacaaaccaaaactctccaaggcaggcaaccctctctccttgaagtttg
ggtgataactcatcccagttatgggaaaac
gaattcaaaaacttgtcccccaagggtctgaatgagtgaagtagcagtct
cagggaattatgtcaaaccacatcagtttccagagggatgcgttctgtcc
ttccatagcctcagaggctttctgggttatctcctcttaggatttatttc
aggatcatggagtgagtctacacacacatattattgtgcacgcatgcata
cgtttctgtgttgttgtaggcattctcgagccgcggagcccagtctagag
gacacacttccgtgctggtactttctgtcttgtttgaggcaggctcattt
cttctgtactgtctaattcatggtaatgaatgtgctcaaagtaattctat
tttagatctataaaggctgttgtgatgtttcctgttctttctggtaactt
gtctattttctctctctccttctctttctgtttctttctttgcttgaaca
gtttggctggaagcttatttgttttattgatttttctaaaaaacccaaac
ttgtggttttagtgactttgggggctttgccccttttgttgttttgtctt
aatttcctgacctttgattactcacagtagtttcccccctctccttaaat
taagaaaacatacactgcaagctaagtgacttgagatacttgtttgctaa
ttgggcatttgttgctaattacttttctcattaatcattgcattgtatat
tctattctgctgttttgcttgtgttcatttcaacattatttaaaaaaaga
tttacttatttgtagatgtgttttatgtattttgtattctgtctgcatat
atgcctgcacacaagagagcggcacaggatcccgtggactacacttatag
attgttgtgagccacaacagagtgcggcgtcatctctagattcctaagat
tacttttaattgcttaaattttttttggtctgatttttaaaggggtaatt
ttaactttggtgagcaatttgagtggtttcagctgatatggttttgactt
tgtggatgagaggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59506707_59507889
seq2: B6Ng01-020O24.b_43_1222

seq1  GAATTCATCATTTTTAATAGCTGAGTAGTACTCCATTGTATAAATGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTTTAATAGCTGAGTAGTACTCCATTGTATAAATGTACC  50

seq1  ACATTTTCTGCATCCATTCCTCTGTTGAAGGACATCTGGTTTCTTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGCATCCATTCCTCTGTTGAAGGACATCTGGTTTCTTTCCAG  100

seq1  CTACCAGAAGCTATTTCTAAAGATATTCAAATATCAAATATGGCGTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGAAGCTATTTCTAAAGATATTCAAATATCAAATATGGCGTCTAA  150

seq1  AAAGAGTTCATCCAATTGCTGCTCTCAAAAAATCGGGTGAGGGAGGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTCATCCAATTGCTGCTCTCAAAAAATCGGGTGAGGGAGGACTG  200

seq1  AGACAGCTCCACACTGTTTGTGGCCATGGCACCCTGTGGCCTCCAGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTCCACACTGTTTGTGGCCATGGCACCCTGTGGCCTCCAGTTAA  250

seq1  CAGTCCTTACTGCTTGTTATCTGTTGATGGGTGGGATTAGTGCAGCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTACTGCTTGTTATCTGTTGATGGGTGGGATTAGTGCAGCTACC  300

seq1  ATTATAGAACTTAAAGGCAATCACTGAAACAAGATTAAACTTGTTTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAACTTAAAGGCAATCACTGAAACAAGATTAAACTTGTTTCTCT  350

seq1  CCTGCTGGGCATGGTGGCACATGCCTGAAATTCTAGCACTAGAGAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGGCATGGTGGCACATGCCTGAAATTCTAGCACTAGAGAGGCTG  400

seq1  AGGCAAGAGGAAGACAAGTTCAAGTTCAGCCTGGAATGTATAGGGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAGGAAGACAAGTTCAAGTTCAGCCTGGAATGTATAGGGATGTG  450

seq1  CTGTCTCAAAATCAAATAGGGACTGGAAAGGTGGCGCAGTGGTTAAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAATCAAATAGGGACTGGAAAGGTGGCGCAGTGGTTAAGGCC  500

seq1  ACTTGCTGCTCTTACTGAGGACCAGGTTCAGCACACAGGCACCTACCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGCTCTTACTGAGGACCAGGTTCAGCACACAGGCACCTACCACG  550

seq1  GAGGCTTACAGCCAACTGGAACTCTGGTTCCAAGAGATTCAATACCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTACAGCCAACTGGAACTCTGGTTCCAAGAGATTCAATACCCTCT  600

seq1  TCTGGCCTCCACAGGCACTACACACATGTAGTACACATACATACATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTCCACAGGCACTACACACATGTAGTACACATACATACATACAT  650

seq1  ACATACATACATACATCAAACAAGAACAAAATGAAATTTTTATATTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACATCAAACAAGAACAAAATGAAATTTTTATATTTGTA  700

seq1  TATATACACATGTATACAATGAATGTCTTTCTACATATATTACATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACATGTATACAATGAATGTCTTTCTACATATATTACATATACA  750

seq1  TACATTCATGCATTATATATACATCCATTCTACGTATGTACACAGTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATGCATTATATATACATCCATTCTACGTATGTACACAGTATAC  800

seq1  AGGATATAAGGACCCTCTGAGACCCAGCTCACCCTCTGCCTTCTCCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAAGGACCCTCTGAGACCCAGCTCACCCTCTGCCTTCTCCATGA  850

seq1  CTTGGTTTCATCCTCATGATCCACTAACATAGCTACAGCACTTCCTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCATCCTCATGATCCACTAACATAGCTACAGCACTTCCTTCAC  900

seq1  AACTATATCCTGCTTCCACACAGCAAATGTATATACACCCCAAAGCCAGA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACTATATCCTGCTTCCACACAGCAAATGTATATACA-CCCAAAGCCAGA  949

seq1  GCATAGTCACATGACCACC-TTAGCAAGCAACGGGG-TTTTCATGAA-GT  997
      ||||||||||||||||||| |||||||||||||||| |||||||||| ||
seq2  GCATAGTCACATGACCACCTTTAGCAAGCAACGGGGTTTTTCATGAAGGT  999

seq1  CCTGCCTGCTGCTGGTACCTCCATCTCTTTAAGTCCTCT-GGTAACAC--  1044
      |||||||||||||||||||||||||||||| |||||||| ||||||||  
seq2  CCTGCCTGCTGCTGGTACCTCCATCTCTTT-AGTCCTCTGGGTAACACCT  1048

seq1  TGTATAAATTTGGATGTTTTTTTACTT-CTGACCATTCCCCCAGCTATCA  1093
       |||||||||     | |||||||||| ||||||||| ||||||||||| 
seq2  GGTATAAATT----CGATTTTTTACTTCCTGACCATT-CCCCAGCTATCC  1093

seq1  AAGAGGTTTTACAAA-CAAAAC-CTCCCAGGCCAAGGCAACCTCTCTCT-  1140
      |||| |||||||||| |||||| |||| ||||  |||||||| |||||| 
seq2  AAGA-GTTTTACAAACCAAAACTCTCCAAGGC--AGGCAACC-CTCTCTC  1139

seq1  CTTGAAAGTTTGGTGATAAAACTCATCCCATGTATGGGAAAAC  1183
      ||||||  || ||||||  |||||||||||  |||||||||||
seq2  CTTGAAGTTTGGGTGAT--AACTCATCCCAGTTATGGGAAAAC  1180

seq1: chr13_59643070_59644089
seq2: B6Ng01-020O24.g_67_1082 (reverse)

seq1  TATCCTCTCATCCACAAAGACCAAAACAATATCAGCTAAAACCACTCAAA  50
      |||||||||||||||||||  |||||| ||||||||| ||||||||||||
seq2  TATCCTCTCATCCACAAAG-TCAAAACCATATCAGCTGAAACCACTCAAA  49

seq1  ATGCCTCA-CATAGTTAAAAATTAACACTTTAAAAATCAGATCAAGAAAA  99
       || |||| || |||| ||||||| | |||||||||||||| ||| ||||
seq2  TTG-CTCACCAAAGTT-AAAATTACCCCTTTAAAAATCAGACCAA-AAAA  96

seq1  AATTAAAGCAATTAAAAGTAATCTTAGGAATCTAGAGATGACGCCGCACT  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGCAATTAAAAGTAATCTTAGGAATCTAGAGATGACGCCGCACT  146

seq1  CTGTTGTGGCTCACAACAATCTATAAGTGTAGTTCCACGGGATCCTGTGC  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGTTGTGGCTCACAACAATCTATAAGTGTAG-TCCACGGGATCCTGTGC  195

seq1  CGCTCTCTTGTGTGCAGGCATATATGCAGACAGAATACAAAATACATAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTCTTGTGTGCAGGCATATATGCAGACAGAATACAAAATACATAAA  245

seq1  ACACATCTACAAATAAGTAAATCTTTTTTTAAATAATGTTGAAATGAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTACAAATAAGTAAATCTTTTTTTAAATAATGTTGAAATGAACA  295

seq1  CAAGCAAAACAGCAGAATAGAATATACAATGCAATGATTAATGAGAAAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAACAGCAGAATAGAATATACAATGCAATGATTAATGAGAAAAG  345

seq1  TAATTAGCAACAAATGCCCAATTAGCAAACAAGTATCTCAAGTCACTTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCAACAAATGCCCAATTAGCAAACAAGTATCTCAAGTCACTTAG  395

seq1  CTTGCAGTGTATGTTTTCTTAATTTAAGGAGAGGGGGGAAACTACTGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTGTATGTTTTCTTAATTTAAGGAGAGGGGGGAAACTACTGTGA  445

seq1  GTAATCAAAGGTCAGGAAATTAAGACAAAACAACAAAAGGGGCAAAGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAAAGGTCAGGAAATTAAGACAAAACAACAAAAGGGGCAAAGCCC  495

seq1  CCAAAGTCACTAAAACCACAAGTTTGGGTTTTTTAGAAAAATCAATAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCACTAAAACCACAAGTTTGGGTTTTTTAGAAAAATCAATAAAA  545

seq1  CAAATAAGCTTCCAGCCAAACTGTTCAAGCAAAGAAAGAAACAGAAAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGCTTCCAGCCAAACTGTTCAAGCAAAGAAAGAAACAGAAAGAG  595

seq1  AAGGAGAGAGAGAAAATAGACAAGTTACCAGAAAGAACAGGAAACATCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAGAGAGAAAATAGACAAGTTACCAGAAAGAACAGGAAACATCAC  645

seq1  AACAGCCTTTATAGATCTAAAATAGAATTACTTTGAGCACATTCATTACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTTATAGATCTAAAATAGAATTACTTTGAGCACATTCATTACC  695

seq1  ATGAATTAGACAGTACAGAAGAAATGAGCCTGCCTCAAACAAGACAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAGACAGTACAGAAGAAATGAGCCTGCCTCAAACAAGACAGAAA  745

seq1  GTACCAGCACGGAAGTGTGTCCTCTAGACTGGGCTCCGCGGCTCGAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGCACGGAAGTGTGTCCTCTAGACTGGGCTCCGCGGCTCGAGAAT  795

seq1  GCCTACAACAACACAGAAACGTATGCATGCGTGCACAATAATATGTGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAACAACACAGAAACGTATGCATGCGTGCACAATAATATGTGTGT  845

seq1  GTAGACTCACTCCATGATCCTGAAATAAATCCTAAGAGGAGATAACCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTCACTCCATGATCCTGAAATAAATCCTAAGAGGAGATAACCCAG  895

seq1  AAAGCCTCTGAGGCTATGGAAGGACAGAACGCATCCCTCTGGAAACTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCTGAGGCTATGGAAGGACAGAACGCATCCCTCTGGAAACTGAT  945

seq1  GTGGTTTGACATAATTCCCTGAGACTGCTACTTCACTCATTCAGACCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGACATAATTCCCTGAGACTGCTACTTCACTCATTCAGACCCTT  995

seq1  GGGGGACAAGTTTTTGAATTC  1020
      |||||||||||||||||||||
seq2  GGGGGACAAGTTTTTGAATTC  1016