BAC Information

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BAC

Clone NameB6Ng01-021H05
Chromosome13 (Build37)
Map Location 116,723,545 - 116,724,646
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
Downstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169, Parp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021H05.b
ACCDH853952
length1,087
definitionDH853952|Mus musculus domesticus DNA, BAC clone: B6Ng01-021H05, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagcagcatcatatctcagccatatggacaccttatgggggac
cacctgttgttacttctgggagaggaacttgacccccacactgcttgaag
ccttacatttttccacatccacctatcactttcagtgagacacagtgtgt
acatagttataagtcccctgagaagcttattaatttctaatcatcatatc
tatcttaaaagtaatccagacacattttttaaggtataaaataaaaaaaa
agtagatgttatcggctgtcaagtagccacctaatgaatttagtacatct
agtctattgattgtgtacaaagcaagcacatagggtacatattcacccaa
agagcatattacacaataagacaatgagcaattctactgtgctcaaattc
tgccaaagtatgctgaactccttttcagaaagacagcttaggagtaagaa
aacctgaaagacaattttacaggtataagtccatgtacgtgcccccaggg
gacttcaaagaacatgacactaatactactcttctgcttaagtcattaca
atgtttcccaagagctagtgattactttaaggtttctttagttctttttt
tttttctgcaagaatcataaaagtatattttacttttgtctaatgtctaa
gggagatttcagttcaggcctgagctaagctatcaaacaatattcttggc
ttccaaagcacttttaatagatcacatttaaaatgtgatccttttagtga
agttgtaggagttaatagtattcaggagcttagcttcatatcaagaattc
taggggctgggtcttctatagtacttctgggcaatgggaagagcagagac
acaccaatgcagatggagcttgtattcctcattgtgtactagtgtaaact
gtatgtacatctaaaacaaaaatgccggttccttgtatttagatttgttg
atctggaatttctcacatgactcatatttgccaaatgtgacattggtaat
tctgaaatgtgtcaaaaataacacctgattctagatctgtgggacaaagt
gatttctgttaaagggaatcacgacttaatgtatggg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116723545_116724646
seq2: B6Ng01-021H05.b_45_1131

seq1  GAATTCTCAGCAGCATCATATCTCAGCCATATGGACACCTTATGGGGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCAGCATCATATCTCAGCCATATGGACACCTTATGGGGGAC  50

seq1  CACCTGTTGTTACTTCTGGGAGAGGAACTTGACCCCCACACTGCTTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTGTTACTTCTGGGAGAGGAACTTGACCCCCACACTGCTTGAAG  100

seq1  CCTTACATTTTTCCACATCCACCTATCACTTTCAGTGAGACACAGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATTTTTCCACATCCACCTATCACTTTCAGTGAGACACAGTGTGT  150

seq1  ACATAGTTATAAGTCCCCTGAGAAGCTTATTAATTTCTAATCATCATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTATAAGTCCCCTGAGAAGCTTATTAATTTCTAATCATCATATC  200

seq1  TATCTTAAAAGTAATCCAGACACATTTTTTAAGGTATAAAATAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAAAGTAATCCAGACACATTTTTTAAGGTATAAAATAAAAAAAA  250

seq1  AGTAGATGTTATCGGCTGTCAAGTAGCCACCTAATGAATTTAGTACATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGTTATCGGCTGTCAAGTAGCCACCTAATGAATTTAGTACATCT  300

seq1  AGTCTATTGATTGTGTACAAAGCAAGCACATAGGGTACATATTCACCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATTGATTGTGTACAAAGCAAGCACATAGGGTACATATTCACCCAA  350

seq1  AGAGCATATTACACAATAAGACAATGAGCAATTCTACTGTGCTCAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATATTACACAATAAGACAATGAGCAATTCTACTGTGCTCAAATTC  400

seq1  TGCCAAAGTATGCTGAACTCCTTTTCAGAAAGACAGCTTAGGAGTAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAGTATGCTGAACTCCTTTTCAGAAAGACAGCTTAGGAGTAAGAA  450

seq1  AACCTGAAAGACAATTTTACAGGTATAAGTCCATGTACGTGCCCCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAAGACAATTTTACAGGTATAAGTCCATGTACGTGCCCCCAGGG  500

seq1  GACTTCAAAGAACATGACACTAATACTACTCTTCTGCTTAAGTCATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAAAGAACATGACACTAATACTACTCTTCTGCTTAAGTCATTACA  550

seq1  ATGTTTCCCAAGAGCTAGTGATTACTTTAAGGTTTCTTTAGTTCTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCCAAGAGCTAGTGATTACTTTAAGGTTTCTTTAGTTCTTTTTT  600

seq1  TTTTTCTGCAAGAATCATAAAAGTATATTTTACTTTTGTCTAATGTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCAAGAATCATAAAAGTATATTTTACTTTTGTCTAATGTCTAA  650

seq1  GGGAGATTTCAGTTCAGGCCTGAGCTAAGCTATCAAACAATATTCTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATTTCAGTTCAGGCCTGAGCTAAGCTATCAAACAATATTCTTGGC  700

seq1  TTCCAAAGCACTTTTAATAGATCACATTTAAAATGTGATCCTTTTAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGCACTTTTAATAGATCACATTTAAAATGTGATCCTTTTAGTGA  750

seq1  AGTTGTAGGAGTTAATAGTATTCAGGAGCTTAGCTTCATATCAAGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGGAGTTAATAGTATTCAGGAGCTTAGCTTCATATCAAGAATTC  800

seq1  TAGGGGCTGGGTCTTCTATAGTACTTCTGGGCAATGGGAAGAGCAGGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGGGGCTGGGTCTTCTATAGTACTTCTGGGCAATGGGAAGAGCA-GAGA  849

seq1  CACACCAATGCAGATGGAGCTTGTATTCCTCATTGTGTACTAGTGTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAATGCAGATGGAGCTTGTATTCCTCATTGTGTACTAGTGTAAAC  899

seq1  TGTATGTACATCTAAAAACAAAAATGCCGGTTCCTTGTATTTAGATTTGT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTATGTACATCT-AAAACAAAAATGCCGGTTCCTTGTATTTAGATTTGT  948

seq1  ATGATCTGGAAATTCTCACATGACTCATATTTTGCGATATGTGACAATTG  1000
       |||||||||| ||||||||||||||||| ||||| | ||||||| ||||
seq2  -TGATCTGGAATTTCTCACATGACTCATA-TTTGCCAAATGTGAC-ATTG  995

seq1  GTATATCCTGCAGAATGTGTCAAAAAATAACACCTGATACTTAGATCCTG  1050
      ||| || |||   |||||||| |||||||||||||||| | ||||| |||
seq2  GTA-ATTCTG--AAATGTGTC-AAAAATAACACCTGATTC-TAGAT-CTG  1039

seq1  TGGGACAAAAGGTGATTTCTTGTTAGAGGGACACACAGACTTAATGTATG  1100
      |||||||||  |||||||| ||||| |||||  ||| |||||||||||||
seq2  TGGGACAAA--GTGATTTC-TGTTAAAGGGAATCAC-GACTTAATGTATG  1085

seq1  GG  1102
      ||
seq2  GG  1087