BAC Information

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BAC

Clone NameB6Ng01-021J10
Chromosome13 (Build37)
Map Location 55,254,810 - 55,378,451
singlet/doubletdoublet
Overlap geneFgfr4, Nsd1
Upstream geneHrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346
Downstream geneRab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J10.bB6Ng01-021J10.g
ACCDH854050DH854051
length1,028968
definitionDH854050|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J10, 5' end.DH854051|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,254,810 - 55,255,839)(55,377,464 - 55,378,451)
sequence
gaattctgtggttgtgagttcagggtaacctgtgagtgggaataaaacct
ccccggacctgtccgccccaacccaagctggagatgaagcatggccctct
ctgctttgcagggtgtggtaggagtcttttgcagatgggccgagcaaact
agggggtaggggacagatcaaggttttaaggcaatagaggaacacggagg
tacaggcaagggagcaaacatgtcggcgtttagaatttactgaagggaca
gactgtgggagttacaaggttgacactggcatttaaaatgaagcgtagaa
aagctgggcccagcacatgggccttgatgggtagtactagccaggctgag
gcaggagcctcaccatttgtagacctgcttggtttgcagagtgagtttca
atgccagtcttcctggtcaactttagtgagaacttgtctcaaaataatag
aaaaagaaacaggagggtcctgcagttaacccttaggggcttgtaatctg
ggtgacagggagaaaaaacaaaatcaaaacaaaaaaactagtgggcagtg
aagaaccaaggtttgccaagataccaagcgagaaatgaccatgacctagt
ctctgtggggcaggggagctgagagacattgaggtcagtagactgattag
gcctgagtcttcctcagcagtgggctgagaaaaaccctcggcagggttct
cagtttggtaaagtatggaatgcatcttctaagaatcatgctgtttttct
tcaactgtcactcactaacattggcctgatacggagattagcatggcccc
tgtgcaaagatggcgcgcacactcacaagagcagggccccaaagaaaaag
aacactgatccaaagatgctggtgacacctggctgttatccaggactagg
taacagcctgtgcgtccctgggacttcactggttcccttgtcaagttaag
gcttagtcctgagtcttccttttggtgaaacgatgctcactacagcatgt
ggacagtctgtgtatcagacttaactcc
gaattctctgatgctctgtagacacttgttttcaatgtttttgaaagctg
atgttcatgaacatcccaaattaaacaactgatggccaggaaataagcat
atggaattttctgttaaatgcagcagtcttaactttaatagggcattgtt
taggatcattcagattatttgcttatttagcctatactccctggtttact
ttttaaggcaacaagttgcatatattttatctgctgtcaagagcacaggc
tatttccttttgaaggggctatatgaacagttgaaatacgtattttgcta
ggaatgggctctcagtaagacaagattccttatacctaattagtcctctc
aatagaacactattcttggatccatgggagaggggaggggacttctagtg
tgggaagttgattctctctggaaggtcaaaggtgagaactgagtggtacc
tccgagctgggtgtgtcttttgttaagtcctccttcttcacttttttata
gtgcactctggctgtgacaagcctctgccgtttccgtttccttggtttat
caaagatcttggtagtgcctataacaggataacaaatgtcatgtaacagc
tattcaaatatatgtccaagaacggttatccttaaattaaaattttaaaa
ccactgattaaagtaatactcaattttaaaatttatttataatgtctaca
ataacataaacagacatgtttttcttttcattttcctttgagacagagtc
cttcctggctgtagagcagcagccttggactgacggaaatatacttgcct
ctactggggataatggtgtatatgaccactctcaagctcataatttttac
cttactagaaaacattatttaaacataagctaaagcttgtatattatttt
agacctatgatatttagttgcactaatcactaaaaaaaaaagagtctgga
aagaagaaatatcatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55254810_55255839
seq2: B6Ng01-021J10.b_44_1071

seq1  GAATTCTGTGGTTGTGAGTTCAGGGTAACCTGTGAGTGGGAATAAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTTGTGAGTTCAGGGTAACCTGTGAGTGGGAATAAAACCT  50

seq1  CCCCGGACCTGTCCGCCCCAACCCAAGCTGGAGATGAAGCATGGCCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGACCTGTCCGCCCCAACCCAAGCTGGAGATGAAGCATGGCCCTCT  100

seq1  CTGCTTTGCAGGGTGTGGTAGGAGTCTTTTGCAGATGGGCCGAGCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGCAGGGTGTGGTAGGAGTCTTTTGCAGATGGGCCGAGCAAACT  150

seq1  AGGGGGTAGGGGACAGATCAAGGTTTTAAGGCAATAGAGGAACACGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTAGGGGACAGATCAAGGTTTTAAGGCAATAGAGGAACACGGAGG  200

seq1  TACAGGCAAGGGAGCAAACATGTCGGCGTTTAGAATTTACTGAAGGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCAAGGGAGCAAACATGTCGGCGTTTAGAATTTACTGAAGGGACA  250

seq1  GACTGTGGGAGTTACAAGGTTGACACTGGCATTTAAAATGAAGCGTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGGAGTTACAAGGTTGACACTGGCATTTAAAATGAAGCGTAGAA  300

seq1  AAGCTGGGCCCAGCACATGGGCCTTGATGGGTAGTACTAGCCAGGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGCCCAGCACATGGGCCTTGATGGGTAGTACTAGCCAGGCTGAG  350

seq1  GCAGGAGCCTCACCATTTGTAGACCTGCTTGGTTTGCAGAGTGAGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCCTCACCATTTGTAGACCTGCTTGGTTTGCAGAGTGAGTTTCA  400

seq1  ATGCCAGTCTTCCTGGTCAACTTTAGTGAGAACTTGTCTCAAAATAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTCTTCCTGGTCAACTTTAGTGAGAACTTGTCTCAAAATAATAG  450

seq1  AAAAAGAAACAGGAGGGTCCTGCAGTTAACCCTTAGGGGCTTGTAATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAACAGGAGGGTCCTGCAGTTAACCCTTAGGGGCTTGTAATCTG  500

seq1  GGTGACAGGGAGAAAAAACAAAATCAAAACAAAAAAACTAGTGGGCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGGGAGAAAAAACAAAATCAAAACAAAAAAACTAGTGGGCAGTG  550

seq1  AAGAACCAAGGTTTGCCAAGATACCAAGCGAGAAATGACCATGACCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAAGGTTTGCCAAGATACCAAGCGAGAAATGACCATGACCTAGT  600

seq1  CTCTGTGGGGCAGGGGAGCTGAGAGACATTGAGGTCAGTAGACTGATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGGCAGGGGAGCTGAGAGACATTGAGGTCAGTAGACTGATTAG  650

seq1  GCCTGAGTCTTCCTCAGCAGTGGGCTGAGAAAAACCCTCGGCAGGGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCTGAGTCTTCCTCAGCAGTGGGCTGAGAAAAACCCTCGGCAGGGTTCT  700

seq1  CAGTTTGGTAAAGTATGGAATGCATCTTCTAAGAATCATGCTG-TTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGTTTGGTAAAGTATGGAATGCATCTTCTAAGAATCATGCTGTTTTTCT  750

seq1  TCAACTGTCACTCACTAACATTGGCCTGATACGGAGATTAGCATGGCCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGTCACTCACTAACATTGGCCTGATACGGAGATTAGCATGGCCCC  800

seq1  TGTGCAAAGATGGCGCGCACACTCACAAGAGCAGGGCCCCAAAGAAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAGATGGCGCGCACACTCACAAGAGCAGGGCCCCAAAGAAAAAG  850

seq1  AACACTGATCCAAAGATGCTGGTGACACCTGGCTGTTATCCAGGACTAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGATCCAAAGATGCTGGTGACACCTGGCTGTTATCCAGGACTAGG  900

seq1  TAACAGCCTGTGCGTCCCTGGGACTCCACTGGTTCCCTGGTCAAGTTAAG  949
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  TAACAGCCTGTGCGTCCCTGGGACTTCACTGGTTCCCTTGTCAAGTTAAG  950

seq1  GCTTAGGTCTGAGTCTTCCTTTT-GTGAAACAGATGCTCCACTACAGCAT  998
      ||||||  ||||||||||||||| ||||||| |||||| |||||||||||
seq2  GCTTAGTCCTGAGTCTTCCTTTTGGTGAAAC-GATGCT-CACTACAGCAT  998

seq1  GTGGACAAGTCTGTGTATCAGACTTAAACTCC  1030
      |||||| |||||||||||||||||| ||||||
seq2  GTGGAC-AGTCTGTGTATCAGACTT-AACTCC  1028

seq1: chr13_55377464_55378451
seq2: B6Ng01-021J10.g_67_1034 (reverse)

seq1  TTCATTGATATTTCTTCCTTTCCAGGACTCTTTTTTTTTTTAAGTGATTA  50
      |||| ||||||||||| ||||||| |||||||||||||||  ||||||||
seq2  TTCA-TGATATTTCTT-CTTTCCA-GACTCTTTTTTTTTT--AGTGATTA  45

seq1  AGTTGCAACTAAATTATCATTATGAGTCTTAAAATAATAATACAAGCTTT  100
         |||||||||| ||||||    ||   ||||||||| |||||||| ||
seq2  --GTGCAACTAAA-TATCAT----AGGTCTAAAATAAT-ATACAAGC-TT  86

seq1  TAGCTTTATGTTTTAAATAATGGTTTTCTAGTAAGGTAAAAACTTATTGA  150
      |||| ||||| |||||||||| |||||||||||||||||||| ||| |||
seq2  TAGC-TTATG-TTTAAATAAT-GTTTTCTAGTAAGGTAAAAA-TTA-TGA  131

seq1  TGCTTGAGAGTGGTCATATACACCATTAT-CCCAGTAGAGGCAAGTATAT  199
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -GCTTGAGAGTGGTCATATACACCATTATCCCCAGTAGAGGCAAGTATAT  180

seq1  TTCCGTCAGTCCAAGGCTGCCTGCTCTACAGCCAGGAAGGACTCTGTCTC  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCCGTCAGTCCAAGGCTG-CTGCTCTACAGCCAGGAAGGACTCTGTCTC  229

seq1  AAAGGAAAATGAAAAGAAAAACATGTCTGTTTATGTTATTGTAGACATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATGAAAAGAAAAACATGTCTGTTTATGTTATTGTAGACATTA  279

seq1  TAAATAAATTTTAAAATTGAGTATTACTTTAATCAGTGGTTTTAAAATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATTTTAAAATTGAGTATTACTTTAATCAGTGGTTTTAAAATTT  329

seq1  TAATTTAAGGATAACCGTTCTTGGACATATATTTGAATAGCTGTTACATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAGGATAACCGTTCTTGGACATATATTTGAATAGCTGTTACATG  379

seq1  ACATTTGTTATCCTGTTATAGGCACTACCAAGATCTTTGATAAACCAAGG  449
      |||||||||||||||||||||||||||||||||||               
seq2  ACATTTGTTATCCTGTTATAGGCACTACCAAGATCNNNNNNNNNNNNNNN  429

seq1  AAACGGAAACGGCAGAGGCTTGTCACAGCCAGAGTGCACTATAAAAAAGT  499
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  NNNCGGAAACGGCAGAGGCTTGTCACAGCCAGAGTGCACTATAAAAAAGT  479

seq1  GAAGAAGGAGGACTTAACAAAAGACACACCCAGCTCGGAGGTACCACTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAGGACTTAACAAAAGACACACCCAGCTCGGAGGTACCACTCA  529

seq1  GTTCTCACCTTTGACCTTCCAGAGAGAATCAACTTCCCACACTAGAAGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACCTTTGACCTTCCAGAGAGAATCAACTTCCCACACTAGAAGTC  579

seq1  CCCTCCCCTCTCCCATGGATCCAAGAATAGTGTTCTATTGAGAGGACTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCTCCCATGGATCCAAGAATAGTGTTCTATTGAGAGGACTAA  629

seq1  TTAGGTATAAGGAATCTTGTCTTACTGAGAGCCCATTCCTAGCAAAATAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATAAGGAATCTTGTCTTACTGAGAGCCCATTCCTAGCAAAATAC  679

seq1  GTATTTCAACTGTTCATATAGCCCCTTCAAAAGGAAATAGCCTGTGCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCAACTGTTCATATAGCCCCTTCAAAAGGAAATAGCCTGTGCTCT  729

seq1  TGACAGCAGATAAAATATATGCAACTTGTTGCCTTAAAAAGTAAACCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCAGATAAAATATATGCAACTTGTTGCCTTAAAAAGTAAACCAGG  779

seq1  GAGTATAGGCTAAATAAGCAAATAATCTGAATGATCCTAAACAATGCCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAGGCTAAATAAGCAAATAATCTGAATGATCCTAAACAATGCCCT  829

seq1  ATTAAAGTTAAGACTGCTGCATTTAACAGAAAATTCCATATGCTTATTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTTAAGACTGCTGCATTTAACAGAAAATTCCATATGCTTATTTC  879

seq1  CTGGCCATCAGTTGTTTAATTTGGGATGTTCATGAACATCAGCTTTCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATCAGTTGTTTAATTTGGGATGTTCATGAACATCAGCTTTCAAA  929

seq1  AACATTGAAAACAAGTGTCTACAGAGCATCAGAGAATTC  988
      |||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAAAACAAGTGTCTACAGAGCATCAGAGAATTC  968