BAC Information

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BAC

Clone NameB6Ng01-022E11
Chromosome13 (Build37)
Map Location 115,390,640 - 115,494,382
singlet/doubletdoublet
Overlap gene4930467J12Rik
Upstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
Downstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022E11.bB6Ng01-022E11.g
ACCDH854543DH854544
length8551,023
definitionDH854543|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E11, 5' end.DH854544|Mus musculus domesticus DNA, BAC clone: B6Ng01-022E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,493,531 - 115,494,382)(115,390,640 - 115,391,664)
sequence
gaattcatttcttttcttcattttgcatgatcccaacagatgaagtattc
tttcatttagttactttagttgcttgggctttttgattcctcgaataagc
ttggataattgggccagctgcatgctacgaggcccagtaacaaatgaaaa
ggcaggtaagttgctcaaatatttgaaggattttaagacaatggcacctg
agaattaagtcatttgtgatgcctgaccttttaaatggagcattttgtgg
ggttggtatattcgtgcccaggaactctgcactccttcgaaagcaccatt
ctacttcttcttatttgtgactccaaagaatcataaacatctgagaataa
accttcattcaataaactcaaaaaacagagagaatgataaggccctcagc
ctttatggtattctatagggaaacaggtagaactgtcgagagcagagaaa
gaagcgtgtcctcattacaaggttgttttacttgacttatactagataca
aataaggatgtgtccaaatatgttccgtatgggttcacatagttggacac
ttgccccatcccacccccattgttttggagaggtttaggagataaagaca
tgcagaggaagtacatcactaggcgtgggattttgagagttcatagccat
accccatttccagttccctctgcttcatgattgaagtttgaggatgtaat
ctctcagcttcctgctcctgctgccatgcctactccttgttgccatacct
ccccagttcaatggacccttcccttctggcactgttgattcaaatcaact
cttcctttcataagtcatttggaatcatggtgttttatcttatttacaga
aaagg
gaattctatccagccgcaaggccgcctgaaagtctccatgtagcaggtca
gacttcagaacaccgaggggtttcttcagaattatcacccagcatgtaca
ctgtgcatccgtgttggccactctcgcctgtcccccaacatgtccctggc
acagaagctttgaacatcgtttgccagattcacgaacgaccatgttcaaa
ttttaaaagcagacagaagaacaaaacaaaacaagatttgaatggatggt
gtctgatttctaatatctccttatcacctacatttcaaaggaaaaacaaa
gaggattttatgaatagaggaagatacaatgcagagaaaaggagggatgc
gatgcaaagaagacaagagattatatttgttctaacagcttgactctttt
cctgatgatatgctctctttttttttaatcaattacagtcattttcttct
tgctctgtaatggaggcagagggcatgtccaaggaaaattatagtcattg
aaatttgttctaaaatcatcagcacagccttctctttaattattttatta
cctaatagtaagatcaacagcagtaaagtagctcctatgttttgaagcct
tgttctttgccaggtatgagctaagggtgctaaatgcgtaagtagataga
atcccatgttagccttgtaaagcagacaccttgatctccttcatcctgca
gatgagatccggaaggttaccgaagataaattcttgctcgggatcgcagt
gctttttccgtggcagatttgaactcaggctgtcttttctcacacctccc
cttagggtgcctggtgtcctcccagcatcttctgggagccagtaacccca
attacaccctctttcaggctctgaagccttacgagttttgcattctatcc
agacatgtgttgtatactgcataattggtgtgtgtgtgccgtagactcgt
atgtgatctttatttacttatcaatgtattctggggtgggacttgggagg
cgattggattatgaggtatagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115493531_115494382
seq2: B6Ng01-022E11.b_32_886 (reverse)

seq1  CTTTTCTGTTACTCTGATAAAACACCATGACTCCAAATGACTTATGAAAG  50
      ||||||||| | |  ||||||||||||||| |||||||||||||||||||
seq2  CTTTTCTGTAAATAAGATAAAACACCATGATTCCAAATGACTTATGAAAG  50

seq1  GAAGAGTTGATTTGAATCAACAGTGCCAGAAGGGAAGGGTCCATTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTGATTTGAATCAACAGTGCCAGAAGGGAAGGGTCCATTGAACT  100

seq1  GGGGAGGTATGGCAACAAGGAGTAGGCATGGCAGCAGGAGCAGGAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTATGGCAACAAGGAGTAGGCATGGCAGCAGGAGCAGGAAGCTG  150

seq1  AGAGATTACATCCTC-AACTTCAATCATGAAGCAGAGGGAACTGGAAATG  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAGATTACATCCTCAAACTTCAATCATGAAGCAGAGGGAACTGGAAATG  200

seq1  GGGTATGGCTATGAACTCTC-AAATCCCACGCCTAGTGATGTACTTCCTC  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGTATGGCTATGAACTCTCAAAATCCCACGCCTAGTGATGTACTTCCTC  250

seq1  TGCATGTCTTTATCTCCTAAACCTCTCC-AAACAATGGGGGTGGGATGGG  297
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCATGTCTTTATCTCCTAAACCTCTCCAAAACAATGGGGGTGGGATGGG  300

seq1  GCAAGTGTCCAACTATGTGAACCCATACGGAACATATTTGGACACATCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTCCAACTATGTGAACCCATACGGAACATATTTGGACACATCCT  350

seq1  TATTTGTATCTAGTATAAGTCAAGTAAAACAACCTTGTAATGAGGACACG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATCTAGTATAAGTCAAGTAAAACAACCTTGTAATGAGGACACG  400

seq1  CTTCTTTCTCTGCTCTCGACAGTTCTACCTGTTTCCCTATAGAATACCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCTGCTCTCGACAGTTCTACCTGTTTCCCTATAGAATACCAT  450

seq1  AAAGGCTGAGGGCCTTATCATTCTCTCTGTTTTTTGAGTTTATTGAATGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGAGGGCCTTATCATTCTCTCTGTTTTTTGAGTTTATTGAATGA  500

seq1  AGGTTTATTCTCAGATGTTTATGATTCTTTGGAGTCACAAATAAGAAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTCTCAGATGTTTATGATTCTTTGGAGTCACAAATAAGAAGAA  550

seq1  GTAGAATGGTGCTTTCGAAGGAGTGCAGAGTTCCTGGGCACGAATATACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATGGTGCTTTCGAAGGAGTGCAGAGTTCCTGGGCACGAATATACC  600

seq1  AACCCCACAAAATGCTCCATTTAAAAGGTCAGGCATCACAAATGACTTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACAAAATGCTCCATTTAAAAGGTCAGGCATCACAAATGACTTAA  650

seq1  TTCTCAGGTGCCATTGTCTTAAAATCCTTCAAATATTTGAGCAACTTACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGTGCCATTGTCTTAAAATCCTTCAAATATTTGAGCAACTTACC  700

seq1  TGCCTTTTCATTTGTTACTGGGCCTCGTAGCATGCAGCTGGCCCAATTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTCATTTGTTACTGGGCCTCGTAGCATGCAGCTGGCCCAATTAT  750

seq1  CCAAGCTTATTCGAGGAATCAAAAAGCCCAAGCAACTAAAGTAACTAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTATTCGAGGAATCAAAAAGCCCAAGCAACTAAAGTAACTAAAT  800

seq1  GAAAGAATACTTCATCTGTTGGGATCATGCAAAATGAAGAAAAGAAATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATACTTCATCTGTTGGGATCATGCAAAATGAAGAAAAGAAATGA  850

seq1  ATTCC  852
      |||||
seq2  ATTCC  855

seq1: chr13_115390640_115391664
seq2: B6Ng01-022E11.g_70_1092

seq1  GAATTCTATCCAGCCGCAAGGCCGCCTGAAAGTCTCCATGTAGCAGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCAGCCGCAAGGCCGCCTGAAAGTCTCCATGTAGCAGGTCA  50

seq1  GACTTCAGAACACCGAGGGGTTTCTTCAGAATTATCACCCAGCATGTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGAACACCGAGGGGTTTCTTCAGAATTATCACCCAGCATGTACA  100

seq1  CTGTGCATCCGTGTTGGCCACTCTCGCCTGTCCCCCAACATGTCCCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATCCGTGTTGGCCACTCTCGCCTGTCCCCCAACATGTCCCTGGC  150

seq1  ACAGAAGCTTTGAACATCGTTTGCCAGATTCACGAACGACCATGTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCTTTGAACATCGTTTGCCAGATTCACGAACGACCATGTTCAAA  200

seq1  TTTTAAAAGCAGACAGAAGAACAAAACAAAACAAGATTTGAATGGATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGCAGACAGAAGAACAAAACAAAACAAGATTTGAATGGATGGT  250

seq1  GTCTGATTTCTAATATCTCCTTATCACCTACATTTCAAAGGAAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTTCTAATATCTCCTTATCACCTACATTTCAAAGGAAAAACAAA  300

seq1  GAGGATTTTATGAATAGAGGAAGATACAATGCAGAGAAAAGGAGGGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTTATGAATAGAGGAAGATACAATGCAGAGAAAAGGAGGGATGC  350

seq1  GATGCAAAGAAGACAAGAGATTATATTTGTTCTAACAGCTTGACTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGAAGACAAGAGATTATATTTGTTCTAACAGCTTGACTCTTTT  400

seq1  CCTGATGATATGCTCTCTTTTTTTTTAATCAATTACAGTCATTTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATATGCTCTCTTTTTTTTTAATCAATTACAGTCATTTTCTTCT  450

seq1  TGCTCTGTAATGGAGGCAGAGGGCATGTCCAAGGAAAATTATAGTCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTAATGGAGGCAGAGGGCATGTCCAAGGAAAATTATAGTCATTG  500

seq1  AAATTTGTTCTAAAATCATCAGCACAGCCTTCTCTTTAATTATTTTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTCTAAAATCATCAGCACAGCCTTCTCTTTAATTATTTTATTA  550

seq1  CCTAATAGTAAGATCAACAGCAGTAAAGTAGCTCCTATGTTTTGAAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGTAAGATCAACAGCAGTAAAGTAGCTCCTATGTTTTGAAGCCT  600

seq1  TGTTCTTTGCCAGGTATGAGCTAAGGGTGCTAAATGCGTAAGTAGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTGCCAGGTATGAGCTAAGGGTGCTAAATGCGTAAGTAGATAGA  650

seq1  ATCCCATGTTAGCCTTGTAAAGCAGACACCTTGATCTCCTTCATCCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGTTAGCCTTGTAAAGCAGACACCTTGATCTCCTTCATCCTGCA  700

seq1  GATGAGATCCGGAAGGTTACCGAAGATAAATTCTTGCTCGGGATCGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATCCGGAAGGTTACCGAAGATAAATTCTTGCTCGGGATCGCAGT  750

seq1  GC-TTTTCCGTGGCAGATTTGAACTCAGGCTGTCTTGTCTCACACCTCCC  799
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTTTTCCGTGGCAGATTTGAACTCAGGCTGTCTTTTCTCACACCTCCC  800

seq1  C-TAGGGTGCCTGGTGTCCTCCCAGCATCTTCTTGGAGCCAGTAACCCCA  848
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTAGGGTGCCTGGTGTCCTCCCAGCATCTTCTGGGAGCCAGTAACCCCA  850

seq1  ATTACAACCCTCTTTCAGGCTCTGAAGCCTTACGAGTTTTGCATTCTATC  898
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAC-ACCCTCTTTCAGGCTCTGAAGCCTTACGAGTTTTGCATTCTATC  899

seq1  CAGACATGTGTTGTATACTGCATAATT-GTGTGTGTGTGCCGTAGACTCG  947
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGACATGTGTTGTATACTGCATAATTGGTGTGTGTGTGCCGTAGACTCG  949

seq1  TATGTTGATACTTTATTATCATTATCAATGGTATTCTGGGGTGGGACTTG  997
      |||| |||| ||||||| |  |||||||| ||||||||||||||||||||
seq2  TATG-TGAT-CTTTATT-TACTTATCAAT-GTATTCTGGGGTGGGACTTG  995

seq1  GGAGGCGATTGGATTATGAGGTATAGCT  1025
      ||||||||||||||||||||||||||||
seq2  GGAGGCGATTGGATTATGAGGTATAGCT  1023