BAC Information

Click to search

BAC

Clone NameB6Ng01-022G22
Chromosome13 (Build37)
Map Location 55,186,913 - 55,306,454
singlet/doubletdoublet
Overlap geneUimc1, LOC622707, Zfp346, Fgfr4
Upstream geneSfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3
Downstream geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022G22.bB6Ng01-022G22.g
ACCDH854649DH854650
length3431,058
definitionDH854649|Mus musculus domesticus DNA, BAC clone: B6Ng01-022G22, 5' end.DH854650|Mus musculus domesticus DNA, BAC clone: B6Ng01-022G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,306,112 - 55,306,454)(55,186,913 - 55,187,986)
sequence
actaaaggaatttggtgcaaggtaaggacctgagtttgagccccagcacc
cacacaaaaaatagaaataaaaaaataataaacaaataaaaaacccagga
aaacaaaacttaacctgtaattccagccaagaagagaagagacaggagac
ccacagatccccctcaccagccagtgtggcaaattcacaacctccaggtt
caaccagatactttctctgaaaagccaagatgagtcagcacgtgacagca
cgagacttcacccagcacttaggagacagagaaaggcaagtttttgggtt
caagactgacctgccgccagcgccagcactggggggggggggg
gaattctcttctcctaatgaaaacactgtatgaattcaattaaaaaatga
aaacttacgtgcaacttttcttttagccaaacactttgatctgttcgact
gttttgtcttcgttttctgcaatccattctcctcttttgtttcctgttat
aaataaaaaaataagatcagagtaggtgacattaaaagtaataatttttg
gggagccgcgggttaccgtgcagacatggccaagtccaagaaccacacca
cacacaaccagtcccgcaaatggcacagaaatggcatcaagaaaccccgg
tcgcaaagatacgaatctcttaagggggttgaccccaagttcctgaggaa
catgcgctttgccaagaagcacaacaagaaaggcctgaagaagatgcagg
ccaacaatgcaaaggcagtgagtgcgcgcgcagaggccatcaaggccctg
gtgaagcctcaggccatcaagcccaagatgccaaaaggccccaaactcaa
gcggctggctttcatcgctcaccctaagcttgggaagcggattcgaagct
acatggccaagggtcagaggctctgccaaccgaagcctaaggtccaaacc
aaggcaggggccaaagctccagctaaggcccaggcttcagctccagccca
ggctcccaaaggtgctcaggcccccaaaagtgcccaggcccctgtgaagg
ccccatagaaatggctcctgccagtgtgaagacagacggactgctgtgac
acacctccccacacactatttgcagatgaccagtgtcctatgctgttcta
caaataaactcaggcaagatcaaaaaaaaaaaaaaagtataatttttcta
tttctctatattcctttggtagaaagaacctgtgaattaccagtgatact
aattatggtgatgcatagacataagaaagtccttttcctcattaaaaggg
ctgcgatctgaaccaattagaccaaaggatgaatggtataattaactgga
cttgattactattatggttccagaaacacataaaaactggccatttccaa
acactagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55306112_55306454
seq2: B6Ng01-022G22.b_49_391 (reverse)

seq1  CCCCCCCCCCCCCAGTGCTGGCGCTGGCGGCAGGTCAGTCTTGAACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCAGTGCTGGCGCTGGCGGCAGGTCAGTCTTGAACCCAA  50

seq1  AAACTTGCCTTTCTCTGTCTCCTAAGTGCTGGGTGAAGTCTCGTGCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGCCTTTCTCTGTCTCCTAAGTGCTGGGTGAAGTCTCGTGCTGTC  100

seq1  ACGTGCTGACTCATCTTGGCTTTTCAGAGAAAGTATCTGGTTGAACCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCTGACTCATCTTGGCTTTTCAGAGAAAGTATCTGGTTGAACCTGG  150

seq1  AGGTTGTGAATTTGCCACACTGGCTGGTGAGGGGGATCTGTGGGTCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGAATTTGCCACACTGGCTGGTGAGGGGGATCTGTGGGTCTCCT  200

seq1  GTCTCTTCTCTTCTTGGCTGGAATTACAGGTTAAGTTTTGTTTTCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCTCTTCTTGGCTGGAATTACAGGTTAAGTTTTGTTTTCCTGGG  250

seq1  TTTTTTATTTGTTTATTATTTTTTTATTTCTATTTTTTGTGTGGGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTGTTTATTATTTTTTTATTTCTATTTTTTGTGTGGGTGCTG  300

seq1  GGGCTCAAACTCAGGTCCTTACCTTGCACCAAATTCCTTTAGT  343
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAAACTCAGGTCCTTACCTTGCACCAAATTCCTTTAGT  343

seq1: chr13_55186913_55187986
seq2: B6Ng01-022G22.g_68_1125

seq1  GAATTCTCTTCTCCTAATGAAAACACTGTATGAATTCAATTAAAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTCCTAATGAAAACACTGTATGAATTCAATTAAAAAATGA  50

seq1  AAACTTACGTGCAACTTTTCTTTTAGCCAAACACTTTGATCTGTTCGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACGTGCAACTTTTCTTTTAGCCAAACACTTTGATCTGTTCGACT  100

seq1  GTTTTGTCTTCGTTTTCTGCAATCCATTCTCCTCTTTTGTTTCCTGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCTTCGTTTTCTGCAATCCATTCTCCTCTTTTGTTTCCTGTTAT  150

seq1  AAATAAAAAAATAAGATCAGAGTAGGTGACATTAAAAGTAATAATTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAATAAGATCAGAGTAGGTGACATTAAAAGTAATAATTTTTG  200

seq1  GGGAGCCGCGGGTTACCGTGCAGACATGGCCAAGTCCAAGAACCACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCGCGGGTTACCGTGCAGACATGGCCAAGTCCAAGAACCACACCA  250

seq1  CACACAACCAGTCCCGCAAATGGCACAGAAATGGCATCAAGAAACCCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAACCAGTCCCGCAAATGGCACAGAAATGGCATCAAGAAACCCCGG  300

seq1  TCGCAAAGATACGAATCTCTTAAGGGGGTTGACCCCAAGTTCCTGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAAAGATACGAATCTCTTAAGGGGGTTGACCCCAAGTTCCTGAGGAA  350

seq1  CATGCGCTTTGCCAAGAAGCACAACAAGAAAGGCCTGAAGAAGATGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCTTTGCCAAGAAGCACAACAAGAAAGGCCTGAAGAAGATGCAGG  400

seq1  CCAACAATGCAAAGGCAGTGAGTGCGCGCGCAGAGGCCATCAAGGCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATGCAAAGGCAGTGAGTGCGCGCGCAGAGGCCATCAAGGCCCTG  450

seq1  GTGAAGCCTCAGGCCATCAAGCCCAAGATGCCAAAAGGCCCCAAACTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCCTCAGGCCATCAAGCCCAAGATGCCAAAAGGCCCCAAACTCAA  500

seq1  GCGGCTGGCTTTCATCGCTCACCCTAAGCTTGGGAAGCGGATTCGAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTGGCTTTCATCGCTCACCCTAAGCTTGGGAAGCGGATTCGAAGCT  550

seq1  ACATGGCCAAGGGTCAGAGGCTCTGCCAACCGAAGCCTAAGGTCCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCCAAGGGTCAGAGGCTCTGCCAACCGAAGCCTAAGGTCCAAACC  600

seq1  AAGGCAGGGGCCAAAGCTCCAGCTAAGGCCCAGGCTTCAGCTCCAGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGGGCCAAAGCTCCAGCTAAGGCCCAGGCTTCAGCTCCAGCCCA  650

seq1  GGCTCCCAAAGGTGCTCAGGCCCCCAAAAGTGCCCAGGCCCCTGTGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAAAGGTGCTCAGGCCCCCAAAAGTGCCCAGGCCCCTGTGAAGG  700

seq1  CCCCATAGAAATGGCTCCTGCCAGTGTGAAGACAGACGGACTGCTGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGAAATGGCTCCTGCCAGTGTGAAGACAGACGGACTGCTGTGAC  750

seq1  ACACCTCCCCACACACTATTTGCAGATGACCAGTGTCCTATGCTGTTCTT  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACCTCCCCACACACTATTTGCAGATGACCAGTGTCCTATGCTGTTC-T  799

seq1  ACAAATAAACTCAGGCAAGATCAAAAAAAAAAAAAAAAAGTAATAATTTT  850
      ||||||||||||||||||||||  ||||||||||||||||| ||||||||
seq2  ACAAATAAACTCAGGCAAGATC--AAAAAAAAAAAAAAAGT-ATAATTTT  846

seq1  TCTATTTCTTCTATATTTCCTTTTGGTTAGTAGAAACCTGTGAATTACCA  900
      |||||||| |||||| |||||||  | ||| |  ||||||||||||||||
seq2  TCTATTTC-TCTATA-TTCCTTT--GGTAGAAAGAACCTGTGAATTACCA  892

seq1  GTGATAACTAATAATGGT-ATGCATAAGACATAAGAAAGTCCTTTTCTCA  949
      ||||| |||||| ||||| |||||| |||||||||||||||||||||   
seq2  GTGAT-ACTAATTATGGTGATGCAT-AGACATAAGAAAGTCCTTTTCCTC  940

seq1  ATTAAAAAAAGGCATGC-ATCTAGAACCAATTAGACCATAAGAATAGAAA  998
      |||   ||||||  ||| |||| ||||||||||||||| ||| || ||| 
seq2  ATT---AAAAGGGCTGCGATCT-GAACCAATTAGACCA-AAGGAT-GAAT  984

seq1  TGTATAATATACT-GACATGATTAACTATTATGTTCACAGAAACACATAA  1047
       |||||||  ||| ||| ||||| ||||||||| |  |||||||||||||
seq2  GGTATAATTAACTGGACTTGATT-ACTATTATGGTTCCAGAAACACATAA  1033

seq1  AAACTGGCCAATATTCAAAACACTAGT  1074
      ||||||||||   ||| ||||||||||
seq2  AAACTGGCCA--TTTCCAAACACTAGT  1058