BAC Information

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BAC

Clone NameB6Ng01-022H03
Chromosome13 (Build37)
Map Location 108,327,856 - 108,426,719
singlet/doubletdoublet
Overlap geneLOC100040820
Upstream geneEG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366, Apoo, AI197445
Downstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022H03.bB6Ng01-022H03.g
ACCDH854659DH854660
length9531,030
definitionDH854659|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H03, 5' end.DH854660|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,425,767 - 108,426,719)(108,327,856 - 108,328,900)
sequence
gaattcatctccctccaccaggtggatttcttattcattgaacatgctat
gctggcggcggcagcggtggcggcggaggggggggggcatggcatttaag
ggtctctccattgtaatgctccagggtcaagctagacactgtggcagccc
tgcctggctttaccactttgacataagcttctctgggcagcttaaattca
gcacaggatatagttggggcaggcaagactagcgttctggataggattcc
tgttacggatacaacacattcaataacttaaaataacgcaggtttattat
caaaagttctggaagtcagatgtccacactgggcaggagtgccaggtgtc
ttctggaggccccacgggagcgtctgcttcttgcccttgtggtcctgtgt
ctcttcagtatctgttctcgttgccatgtctcttccgttctgattctgac
ttccttcatagcttccctaagaatccccgtgtttctttcgggcccaccaa
catacccgaggtcactgctctacttccatatcttgaatcccctctgagaa
gccccctttgccatctgagaccaaacactgagatctttggaacaggagaa
gcatctttgtgtctattgtgactccttgcatctgtttacacagctgtata
taaaaaaatatgcctctcttccccgagggactatggaaggatttaatgtg
gtaatttatacgtataacttccctattctgttgtctggcacagtggaggt
atttttattctggtcagtagctttgtaagccagaaacgaagaactgtggc
ttctcctttctgacccttgagcttcttctagctattgctgagtcccaagt
tagaaatcaataaatgtataataattattttgatcgatgacaatggctaa
cataccataattgctcgtaaatgatttgtggggtatttattaatttggtg
gta
gaattcaggactaaattaacagaagggaatgtctgcatcatcccatcaat
gactcatttctttacttaaaatctgcaaagaagaactatatctgtattta
tatttataaagaaaaatttgtctatatttatcaacaaagtatattgccac
caaaacctctagtttcttcaatcaaatattcaatattataattgtcaaga
tcattgcattgatttttttaccttagttcctcagtgcaaggctttacctt
ctctgtctgtgatatttattttcttatgtattttttatatattctagaaa
ggctggcacattttgtatactacatgatcagtgtaagcttagaaccagac
tcacttttaaatcattctgatttatttgctctatgaatttgggcaactta
agatgcattgatatgactcagtttctttaactttaaaatgggtagtgata
tttaatttactgtaagagttattaattacaattatgtaacattaatcata
tacatgtgtatatataatgtaattaatgaaataaagtgttctttaaatgt
ccattcctaccactgcttggttgtgatggtggtttgaatgggaatggccc
ccatatacttgaatacttagtccatagggagcagaattataggagatatt
gccttgttggaataggtgtggccttgttggagagaatatgtcagtgtggg
gaggtgggctttgaagttctcagaatctcaagtctgaccaacatgtctcc
ttctgctgcctgtgggtcaagatgtagaactctcatctcctttccaacca
tgtttttcaccatgatgatagtggattattcctctgaaacgggaagccag
cccattaaatgttttctttattagattgctagaattatggtgtctcttca
cagaataaaacctaactaagtcattgcaaagcttataggagatctatggt
ccactcactggtcgaatatcctttatctcttctttgaaatcaagggtatg
tgtgagaacttcagcttggccaaacttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108425767_108426719
seq2: B6Ng01-022H03.b_44_996 (reverse)

seq1  TACCACCAAAATAATAAATAACCCACAAATCATTTTAGAGCAATTATGGT  50
      |||||||||| ||||||||| ||||||||||||||  |||||||||||||
seq2  TACCACCAAATTAATAAATACCCCACAAATCATTTACGAGCAATTATGGT  50

seq1  ATGCTAGCCATTGTCATCGATCAAAATAATTATTTATTACATTTATTGAT  100
      ||| ||||||||||||||||||||||||||||||   |||||||||||||
seq2  ATGTTAGCCATTGTCATCGATCAAAATAATTATT--ATACATTTATTGAT  98

seq1  TTCCTACTTGGGACTCAGCAATAGCTAGAAGAAGCTCAAGGGTCAGAAAG  150
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTGGGACTCAGCAATAGCTAGAAGAAGCTCAAGGGTCAGAAAG  148

seq1  GAGAAGCCACAGTTCTTCGTTTCTGGCTTACAAAGCTACTGACCAGAAT-  199
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGAAGCCACAGTTCTTCGTTTCTGGCTTACAAAGCTACTGACCAGAATA  198

seq1  AAAATACCTCCACTGTGCCAGAC-ACAGAATAGGGAAGTTATACGTATAA  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAATACCTCCACTGTGCCAGACAACAGAATAGGGAAGTTATACGTATAA  248

seq1  ATTACCACATTAAATCCTTCCATAGTCCCTCGGGGAAGAGAGGCATATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACATTAAATCCTTCCATAGTCCCTCGGGGAAGAGAGGCATATTT  298

seq1  TTTTATATACAGCTGTGTAAACAGATGCAAGGAGTCACAATAGACACAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATACAGCTGTGTAAACAGATGCAAGGAGTCACAATAGACACAAA  348

seq1  GATGCTTCTCCTGTTCCAAAGATCTCAGTGTTTGGTCTCAGATGGCAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCTCCTGTTCCAAAGATCTCAGTGTTTGGTCTCAGATGGCAAAG  398

seq1  GGGGCTTCTCAGAGGGGATTCAAGATATGGAAGTAGAGCAGTGACCTCGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCTCAGAGGGGATTCAAGATATGGAAGTAGAGCAGTGACCTCGG  448

seq1  GTATGTTGGTGGGCCCGAAAGAAACACGGGGATTCTTAGGGAAGCTATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTGGTGGGCCCGAAAGAAACACGGGGATTCTTAGGGAAGCTATGA  498

seq1  AGGAAGTCAGAATCAGAACGGAAGAGACATGGCAACGAGAACAGATACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCAGAATCAGAACGGAAGAGACATGGCAACGAGAACAGATACTG  548

seq1  AAGAGACACAGGACCACAAGGGCAAGAAGCAGACGCTCCCGTGGGGCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACAGGACCACAAGGGCAAGAAGCAGACGCTCCCGTGGGGCCTC  598

seq1  CAGAAGACACCTGGCACTCCTGCCCAGTGTGGACATCTGACTTCCAGAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACACCTGGCACTCCTGCCCAGTGTGGACATCTGACTTCCAGAAC  648

seq1  TTTTGATAATAAACCTGCGTTATTTTAAGTTATTGAATGTGTTGTATCCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAATAAACCTGCGTTATTTTAAGTTATTGAATGTGTTGTATCCG  698

seq1  TAACAGGAATCCTATCCAGAACGCTAGTCTTGCCTGCCCCAACTATATCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGAATCCTATCCAGAACGCTAGTCTTGCCTGCCCCAACTATATCC  748

seq1  TGTGCTGAATTTAAGCTGCCCAGAGAAGCTTATGTCAAAGTGGTAAAGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAATTTAAGCTGCCCAGAGAAGCTTATGTCAAAGTGGTAAAGCC  798

seq1  AGGCAGGGCTGCCACAGTGTCTAGCTTGACCCTGGAGCATTACAATGGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGCTGCCACAGTGTCTAGCTTGACCCTGGAGCATTACAATGGAG  848

seq1  AGACCCTTAAATGCCATGCCCCCCCCCCTCCGCCGCCACCGCTGCCGCCG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTTAAATGCCATGCCCCCCCCCCTCCGCCGCCACCGCTGCCGCCG  898

seq1  CCAGCATAGCATGTTCAATGAATAAGAAATCCACCTGGTGGAGGGAGATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATAGCATGTTCAATGAATAAGAAATCCACCTGGTGGAGGGAGATG  948

seq1  AATTC  953
      |||||
seq2  AATTC  953

seq1: chr13_108327856_108328900
seq2: B6Ng01-022H03.g_67_1096

seq1  GAATTCAGGACTAAATTAACAGAAGGGAATGTCTGCATCATCCCATCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTAAATTAACAGAAGGGAATGTCTGCATCATCCCATCAAT  50

seq1  GACTCATTTCTTTACTTAAAATCTGCAAAGAAGAACTATATCTGTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTTCTTTACTTAAAATCTGCAAAGAAGAACTATATCTGTATTTA  100

seq1  TATTTATAAAGAAAAATTTGTCTATATTTATCAACAAAGTATATTGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAAAGAAAAATTTGTCTATATTTATCAACAAAGTATATTGCCAC  150

seq1  CAAAACCTCTAGTTTCTTCAATCAAATATTCAATATTATAATTGTCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCTAGTTTCTTCAATCAAATATTCAATATTATAATTGTCAAGA  200

seq1  TCATTGCATTGATTTTTTTACCTTAGTTCCTCAGTGCAAGGCTTTACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCATTGATTTTTTTACCTTAGTTCCTCAGTGCAAGGCTTTACCTT  250

seq1  CTCTGTCTGTGATATTTATTTTCTTATGTATTTTTTATATATTCTAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTGTGATATTTATTTTCTTATGTATTTTTTATATATTCTAGAAA  300

seq1  GGCTGGCACATTTTGTATACTACATGATCAGTGTAAGCTTAGAACCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCACATTTTGTATACTACATGATCAGTGTAAGCTTAGAACCAGAC  350

seq1  TCACTTTTAAATCATTCTGATTTATTTGCTCTATGAATTTGGGCAACTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTAAATCATTCTGATTTATTTGCTCTATGAATTTGGGCAACTTA  400

seq1  AGATGCATTGATATGACTCAGTTTCTTTAACTTTAAAATGGGTAGTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATTGATATGACTCAGTTTCTTTAACTTTAAAATGGGTAGTGATA  450

seq1  TTTAATTTACTGTAAGAGTTATTAATTACAATTATGTAACATTAATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTACTGTAAGAGTTATTAATTACAATTATGTAACATTAATCATA  500

seq1  TACATGTGTATATATAATGTAATTAATGAAATAAAGTGTTCTTTAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTATATATAATGTAATTAATGAAATAAAGTGTTCTTTAAATGT  550

seq1  CCATTCCTACCACTGCTTGGTTGTGATGGTGGTTTGAATGGGAATGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTACCACTGCTTGGTTGTGATGGTGGTTTGAATGGGAATGGCCC  600

seq1  CCATATACTTGAATACTTAGTCCATAGGGAGCAGAATTATAGGAGATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACTTGAATACTTAGTCCATAGGGAGCAGAATTATAGGAGATATT  650

seq1  GCCTTGTTGGAATAGGTGTGGCCTTGTTGGAGAGAATATGTCAGTGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGGAATAGGTGTGGCCTTGTTGGAGAGAATATGTCAGTGTGGG  700

seq1  GAGGTGGGCTTTGAAGTTCTCAGAATCTCAAGTCTGACCAACATGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGCTTTGAAGTTCTCAGAATCTCAAGTCTGACCAACATGTCTCC  750

seq1  TTCTGCTGCCTGTGGGTCAAGATGTAGAACTCTCATCTCCTTTCCAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCCTGTGGGTCAAGATGTAGAACTCTCATCTCCTTTCCAACCA  800

seq1  TGTTTTTCACCATGATGATAGTGGATTATTCCTCTGAAACGGTAAGCCAG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTTTTTCACCATGATGATAGTGGATTATTCCTCTGAAACGGGAAGCCAG  850

seq1  CCCCAATTAAATGTTTTTCTTTATAAGAGTTGCTAGAGTTATGGTGTCTC  900
      |||  |||||||| |||||||||| ||| |||||||| ||||||||||||
seq2  CCC--ATTAAATG-TTTTCTTTATTAGA-TTGCTAGAATTATGGTGTCTC  896

seq1  TTCACAGAAATAAAACCCTAACTAAGTCATTGGCAAAGCTCTATATGAGA  950
      ||||||| ||||||| ||||||||||||||| |||||||| |||| ||||
seq2  TTCACAG-AATAAAA-CCTAACTAAGTCATT-GCAAAGCT-TATAGGAGA  942

seq1  TTCTATGTTCCACTCACCTGTCAGATTATCCTTTTATTCTTCTTCTTTGA  1000
       |||||| |||||||||  ||| || ||||| |||||   ||||||||||
seq2  -TCTATGGTCCACTCACTGGTC-GAATATCC-TTTAT--CTCTTCTTTGA  987

seq1  AATCAAAGGCTATGTGTGAGAACTTACAGCTGGCCAAAACTTCTG  1045
      |||| |||| ||||||||||||||| ||||| | | |||||||||
seq2  AATC-AAGGGTATGTGTGAGAACTT-CAGCTTGGCCAAACTTCTG  1030