BAC Information

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BAC

Clone NameB6Ng01-022I14
Chromosome5 (Build37)13 (Build37)
Map Location 51,609,896 - 51,610,42684,898,870 - 84,900,004
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022I14.bB6Ng01-022I14.g
ACCDH854719DH854720
length9951,133
definitionDH854719|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I14, 5' end.DH854720|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,609,896 - 51,610,426)(84,898,870 - 84,900,004)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaatttcattcagtatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttattggat
ctttctgtgttttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttggaggtctgatagaactctgcactaaacaaaccct
tctggtcctgggtcttttttggctgggagaatattaataactgcttctac
ttctttagggaatatgggactgtttagatggtcaacttgatcctgattca
actttggtacctggtatctgtccagaaatttgtccatttcgtccaggttt
tccagttttgttgagtatagccttttgtagaaggatctgatgctgttttg
gatttcttcaggatctattgttatgtctcccttttcatttctgattttgt
taagtaggattttgtccctgtgccctctagtgagtctagctaagggttta
tctatcttgttgattttctcaaagaaccaactcctcgtttggttaattct
ttgaatagttcttcttgtttccacttggttgatttcacccctgagtttga
ttattcctgccttctactcctcttgggtgaatttgcttccttttttctag
agcttttagatgtgttgtcaagctggtagtgtgtgctctctccagtttct
ctggaagcactcaaagctatgagtttcctctagaaatgctttcat
gaattcctcggtaataactacattcctccttcttggaaaggcacagtacc
taaaatgttctcgacttctcttctgatgtcggccgccctataagcagtcc
tcagagtattgaactttgaattttttgaaagctaaagtatttttcccatt
ttgcaaaatagttttaaaatgtcattatatgcatctatgtccaggtgtgc
tctttatactttgcctaataaatcattttcaaatactgtagcacaattgg
tttccttttctagttgagatttatttctaaagcttaggaattcttttatt
tctcattgattcatacatttttatattagttttattgtttctaaggattt
gccttttaaggacacaaaaagctgatttctaattgtgtaaaataaatctt
tgatttcagtcagcaactagtgtttttatccgggaaagcctcagcctttt
ctttctttctctctttctttctttctttctttctttctttctttctttct
ttctttctttctttctttctctctctctctctctctatctctctctttct
ttttcataaaacagtatatttcgaaggcttcatgacataagaacaataca
gattttatagtggttagagatcagtaagaaatacaaagtggagtggtgct
caaatgctggtccaggctttaaattaaaacagatatttatttaaaagaat
ttaataaactaacaaagtacttgcaaatatttcaagtaatatttgcagca
gaaaataatttttgttgcttatttttcctcactttttgtcttgcaaacgt
gggcgtacatacactggaatatttcaatgtcatgattccatcatagacag
aaattaaaagcataaatgtaacattttctgatgcatttgccatagttgta
gtctctatcaatgtgcatattttcattttgtacttaaacaaaggtgcata
tatttaaagtagatgttcactcaaaactaagatttaattttcaaactatg
tagcaaataagtatattagtacaatatggataaagatggccaattagatt
ttcaccttcttaaagaactatagaagcaaaaattaggcataaaatgctat
ttttcctctttttatctccttcttgagggcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51609896_51610426
seq2: B6Ng01-022I14.b_516_1040 (reverse)

seq1  ATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAA  50
      |||||||||||||| ||| |||||||||||||| ||||||| ||||   |
seq2  ATGAAAGCATTTCT-AGA-GGAAACTCATAGCTTTGAGTGCTTCCA--GA  46

seq1  GAAACCGGAGAGAACACATACTAGCAGCTTGACAACACATCTAAAAGCTC  100
      ||||| ||||||| |||| |||| ||||||||||||||||||||||||||
seq2  GAAACTGGAGAGAGCACACACTACCAGCTTGACAACACATCTAAAAGCTC  96

seq1  TAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATA  150
      ||| |||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TAG-AAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGAAGGCAGG-AATA  144

seq1  ATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCA  194

seq1  AAGAATTAACCAAATGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAG  244

seq1  ATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATT  300
      |||||||||||||||||||||||| |||||||||||||||||||||| ||
seq2  ATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTACTT  294

seq1  AACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAAT  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AACAAAATCAGAAATGAAAAGGGAGACATAACAATAGATCCTGAAGAAAT  344

seq1  CCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGG  400
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAGCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGG  394

seq1  AAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAG  444

seq1  TTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATTCCCTAAAGA  494

seq1  AATAGAAGCAGTTATTAATAGTCTCCCAGCC  531
      | |||||||||||||||||| ||||||||||
seq2  AGTAGAAGCAGTTATTAATATTCTCCCAGCC  525

seq1: chr13_84898870_84900004
seq2: B6Ng01-022I14.g_70_1202

seq1  GAATTCCTCGGTAATAACTACATTCCTCCTTCTTGGAAAGGCACAGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGTAATAACTACATTCCTCCTTCTTGGAAAGGCACAGTACC  50

seq1  TAAAATGTTCTCGACTTCTCTTCTGATGTCGGCCGCCCTATAAGCAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTCTCGACTTCTCTTCTGATGTCGGCCGCCCTATAAGCAGTCC  100

seq1  TCAGAGTATTGAACTTTGAATTTTTTGAAAGCTAAAGTATTTTTCCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTATTGAACTTTGAATTTTTTGAAAGCTAAAGTATTTTTCCCATT  150

seq1  TTGCAAAATAGTTTTAAAATGTCATTATATGCATCTATGTCCAGGTGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAATAGTTTTAAAATGTCATTATATGCATCTATGTCCAGGTGTGC  200

seq1  TCTTTATACTTTGCCTAATAAATCATTTTCAAATACTGTAGCACAATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATACTTTGCCTAATAAATCATTTTCAAATACTGTAGCACAATTGG  250

seq1  TTTCCTTTTCTAGTTGAGATTTATTTCTAAAGCTTAGGAATTCTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTCTAGTTGAGATTTATTTCTAAAGCTTAGGAATTCTTTTATT  300

seq1  TCTCATTGATTCATACATTTTTATATTAGTTTTATTGTTTCTAAGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGATTCATACATTTTTATATTAGTTTTATTGTTTCTAAGGATTT  350

seq1  GCCTTTTAAGGACACAAAAAGCTGATTTCTAATTGTGTAAAATAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAAGGACACAAAAAGCTGATTTCTAATTGTGTAAAATAAATCTT  400

seq1  TGATTTCAGTCAGCAACTAGTGTTTTTATCCGGGAAAGCCTCAGCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAGTCAGCAACTAGTGTTTTTATCCGGGAAAGCCTCAGCCTTTT  450

seq1  CTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  500

seq1  TTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTATCTCTCTCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCTCTCTATCTCTCTCTTTCT  550

seq1  TTTTCATAAAACAGTATATTTCGAAGGCTTCATGACATAAGAACAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAAAACAGTATATTTCGAAGGCTTCATGACATAAGAACAATACA  600

seq1  GATTTTATAGTGGTTAGAGATCAGTAAGAAATACAAAGTGGAGTGGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATAGTGGTTAGAGATCAGTAAGAAATACAAAGTGGAGTGGTGCT  650

seq1  CAAATGCTGGTCCAGGCTTTAAATTAAAACAGATATTTATTTAAAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTGGTCCAGGCTTTAAATTAAAACAGATATTTATTTAAAAGAAT  700

seq1  TTAATAAACTAACAAAGTACTTGCAAATATTTCAAGTAATA-TTGCAGCA  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAATAAACTAACAAAGTACTTGCAAATATTTCAAGTAATATTTGCAGCA  750

seq1  GAAAATAA-TTTTGTTGCTTATTTTTCCTCAC-TTTTGTCTTGCAAACGT  797
      |||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  GAAAATAATTTTTGTTGCTTATTTTTCCTCACTTTTTGTCTTGCAAACGT  800

seq1  GGGCGTACATACACTGGAATA-TTCAATGTCAATGATTCCATCATAGACA  846
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  GGGCGTACATACACTGGAATATTTCAATGTC-ATGATTCCATCATAGACA  849

seq1  GAAATTAAAAGCATAAATGTAACATTTTCTGATGCATTTGCCATAGTTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAAAAGCATAAATGTAACATTTTCTGATGCATTTGCCATAGTTGT  899

seq1  AGTCTCTATCAATGTGCATATTTTCATTTTGTAACTTAAACAAAGGTGCA  946
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTCTCTATCAATGTGCATATTTTCATTTTGT-ACTTAAACAAAGGTGCA  948

seq1  TATATTTTAAAGTAGATGTTCACCTCAAAACTAAGATTTAATTTTCAAAC  996
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATA-TTTAAAGTAGATGTTCA-CTCAAAACTAAGATTTAATTTTCAAAC  996

seq1  TATGTAGCAAATATAGTATA-TAGTACAAATATGCATAAAGATGCCAAAT  1045
      ||||||||||||| |||||| |||||| |||||| ||||||||| | |||
seq2  TATGTAGCAAATA-AGTATATTAGTAC-AATATGGATAAAGATGGCCAAT  1044

seq1  CTAGATTTTCACCTTCTAAAAG-ACTATAG-AGCAAAAATTATGTCACTT  1093
       |||||||||||||||| |||| ||||||| ||||||||||| |   | |
seq2  -TAGATTTTCACCTTCTTAAAGAACTATAGAAGCAAAAATTAGG---CAT  1090

seq1  AAAATGCTA-TTTTCCTC-TTTTATCTCCATCTTGAATGGCAAC  1135
      ||||||||| |||||||| |||||||||| ||||| | ||||||
seq2  AAAATGCTATTTTTCCTCTTTTTATCTCCTTCTTG-AGGGCAAC  1133