BAC Information

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BAC

Clone NameB6Ng01-022J11
Chromosome13 (Build37)
Map Location 27,426,287 - 27,437,712
singlet/doubletdoublet
Overlap genePrl8a2
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1
Downstream genePrl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022J11.bB6Ng01-022J11.g
ACCDH854757DH854758
length2091,160
definitionDH854757|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J11, 5' end.DH854758|Mus musculus domesticus DNA, BAC clone: B6Ng01-022J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,426,287 - 27,426,495)(27,436,542 - 27,437,712)
sequence
agtgtttcaccgggatgacggtattctatccggagttgcagatattgatg
taaaaacaaaacaaaaacaaactaacaaacaaataaaaccagagcttcag
gaacacaacgtgaggagaatcagcaaggtgagcactcttctaattctctt
tactttcctcctttgtatatgatgtgacatgtggagaataatgaaactaa
ttgtgtgtg
gaattccattaaaacaaactcaaagaatccctaaactggatactttaact
tagagaggcacagtgaggagtttacttacagaagtgaggttgactcaatg
gcagcattattggccaggactttccaagcaggatgagttcagactctgaa
gagatgcttcactggagccgtacattaggctagttctactccccctatat
agttttacagataaccctgagggcatgcacaaccatgtgacagcaagaag
tcacatagagtactcctcattcatgaaccatctgtctattttcagggaac
attaacaatttaattacaacatacttatctgtgtctggatgctttttatt
ttattttatttttgcctgtttctacatgatgattcttgtccgaattattt
tgatatctctgaagctatctcagtggcctgatgatgggatggtcaggtca
aatcaggaagaaagtattgttcataattacttccccttccttagactctt
atgttctttctatcaccttttttctaatatttatagacagagatggattc
tttactgaatatttgaccaccatgacatagcattagtaaattatctgtag
tattatcatgaatctctgctagtaatcactgattactttgaagagtgttt
ctctaagaactaagctgacacttaaaataatcttgtcttagacagggttt
ctattctgcacaaacatcatgaccaagaaacaagttggggaagaaagggt
ttattcagcttacactttcatactgctgttcatcaacaaggaagtcagga
ctggaattcaagcagatcagtaagcaggagctgatgcagaggccatggag
ggatgttctttactggcttgcctcccctggcttgctcagcctgctctctt
atagaaccaagattaccagcccagagatggtcccacccacaaggggcctt
tccccttgatcactaattgagaaatgcctttcagttggatctctggaggc
atttcctcaactgaagctcctttctctgggataactccagctgtgtcaag
ttgaacaaaactaggcagtccaatctacatgcttaatttagaattttgga
agcctttgaactaatcagataacctccaagagagacctcttaacacctct
ctaaacagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27426287_27426495
seq2: B6Ng01-022J11.b_54_262

seq1  AGTGTTTCACCGGGATGACGGTATTCTATCCGGAGTTGCAGATATTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCACCGGGATGACGGTATTCTATCCGGAGTTGCAGATATTGATG  50

seq1  TAAAAACAAAACAAAAACAAACTAACAAACAAATAAAACCAGAGCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAAACAAAAACAAACTAACAAACAAATAAAACCAGAGCTTCAG  100

seq1  GAACACAACGTGAGGAGAATCAGCAAGGTGAGCACTCTTCTAATTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAACGTGAGGAGAATCAGCAAGGTGAGCACTCTTCTAATTCTCTT  150

seq1  TACTTTCCTCCTTTGTATATGATGTGACATGTGGAGAATAATGAAACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCCTCCTTTGTATATGATGTGACATGTGGAGAATAATGAAACTAA  200

seq1  TTGTGTGTG  209
      |||||||||
seq2  TTGTGTGTG  209

seq1: chr13_27436542_27437712
seq2: B6Ng01-022J11.g_65_1224 (reverse)

seq1  AACTGTTATAGAGAGGTGTTAAAGAAGTTTCTCTGTGAAGTATACTTGAT  50
      ||||||| |||||||||||| |||| || ||||| || ||  ||  ||||
seq2  AACTGTT-TAGAGAGGTGTT-AAGAGGTCTCTCT-TGGAGGTTATCTGAT  47

seq1  ATAGTTCAAAAGGTCTTCCAAATATCTAAATTAAGCATGTAGATTTGTAC  100
       |||||||||  | ||||||||  ||||||||||||||||||| ||| ||
seq2  -TAGTTCAAA--GGCTTCCAAAATTCTAAATTAAGCATGTAGA-TTGGAC  93

seq1  TGCCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGG  150
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TGCCTAGTTTTGT-TCAACTTGACACAGCTGGAGTTATCCCAGAGAAAGG  142

seq1  AGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGAAAGGCATTTTC  200
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AGCTTCAGTTGAGGAAATGCCTCCA-GAGATCCAACTGAAAGGCA-TTTC  190

seq1  TCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTG  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAATTAGTGATCAA-GGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTG  239

seq1  GGCTGGTAATCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAATCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAG  289

seq1  GCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTT  339

seq1  ACTGATCTGCTTGAATTCCAGTCCTGACTTCCTTGTTGATGAACAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCTGCTTGAATTCCAGTCCTGACTTCCTTGTTGATGAACAGCAGT  389

seq1  ATGAAAGTGTAAGCTGAATAAACCCTTTCTTCCCCAACTTGTTTCTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGTAAGCTGAATAAACCCTTTCTTCCCCAACTTGTTTCTTGGT  439

seq1  CATGATGTTTGTGCAGAATAGAAACCCTGTCTAAGACAAGATTATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTTGTGCAGAATAGAAACCCTGTCTAAGACAAGATTATTTTAA  489

seq1  GTGTCAGCTTAGTTCTTAGAGAAACACTCTTCAAAGTAATCAGTGATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCTTAGTTCTTAGAGAAACACTCTTCAAAGTAATCAGTGATTAC  539

seq1  TAGCAGAGATTCATGATAATACTACAGATAATTTACTAATGCTATGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGATTCATGATAATACTACAGATAATTTACTAATGCTATGTCAT  589

seq1  GGTGGTCAAATATTCAGTAAAGAATCCATCTCTGTCTATAAATATTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCAAATATTCAGTAAAGAATCCATCTCTGTCTATAAATATTAGAA  639

seq1  AAAAGGTGATAGAAAGAACATAAGAGTCTAAGGAAGGGGAAGTAATTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGATAGAAAGAACATAAGAGTCTAAGGAAGGGGAAGTAATTATG  689

seq1  AACAATACTTTCTTCCTGATTTGACCTGACCATCCCATCATCAGGCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATACTTTCTTCCTGATTTGACCTGACCATCCCATCATCAGGCCACT  739

seq1  GAGATAGCTTCAGAGATATCAAAATAATTCGGACAAGAATCATCATGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGCTTCAGAGATATCAAAATAATTCGGACAAGAATCATCATGTAG  789

seq1  AAACAGGCAAAAATAAAATAAAATAAAAAGCATCCAGACACAGATAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCAAAAATAAAATAAAATAAAAAGCATCCAGACACAGATAAGTA  839

seq1  TGTTGTAATTAAATTGTTAATGTTCCCTGAAAATAGACAGATGGTTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAATTAAATTGTTAATGTTCCCTGAAAATAGACAGATGGTTCATG  889

seq1  AATGAGGAGTACTCTATGTGACTTCTTGCTGTCACATGGTTGTGCATGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAGTACTCTATGTGACTTCTTGCTGTCACATGGTTGTGCATGCC  939

seq1  CTCAGGGTTATCTGTAAAACTATATAGGGGGAGTAGAACTAGCCTAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTTATCTGTAAAACTATATAGGGGGAGTAGAACTAGCCTAATGT  989

seq1  ACGGCTCCAGTGAAGCATCTCTTCAGAGTCTGAACTCATCCTGCTTGGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTCCAGTGAAGCATCTCTTCAGAGTCTGAACTCATCCTGCTTGGAA  1039

seq1  AGTCCTGGCCAATAATGCTGCCATTGAGTCAACCTCACTTCTGTAAGTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGCCAATAATGCTGCCATTGAGTCAACCTCACTTCTGTAAGTAA  1089

seq1  ACTCCTCACTGTGCCTCTCTAAGTTAAAGTATCCAGTTTAGGGATTCTTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCACTGTGCCTCTCTAAGTTAAAGTATCCAGTTTAGGGATTCTTT  1139

seq1  GAGTTTGTTTTAATGGAATTC  1171
      |||||||||||||||||||||
seq2  GAGTTTGTTTTAATGGAATTC  1160