BAC Information

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BAC

Clone NameB6Ng01-022K08
Chromosome13 (Build37)5 (Build37)
Map Location 109,510,018 - 109,510,53611,454,194 - 11,455,356
singlet/doubletsingletsinglet
Overlap genePde4d
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144
Downstream geneLOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022K08.bB6Ng01-022K08.g
ACCDH854796DH854797
length9981,141
definitionDH854796|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K08, 5' end.DH854797|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,510,018 - 109,510,536)(11,454,194 - 11,455,356)
sequence
gaattcatgccaaataagggatgttgaaagtgagagaatggcctttcaag
ggaatagaacaccaactggttatttaatgccacgaaaacacatataaaaa
gtaacatcagttactagagactgatcaagctgtatttatgtattaaagaa
taccaccattaccccacactaaggccaataaaaattaacacaaaaagagc
ccatgaatttgaaaaagagtaggtgtgaaaatgaagtttatggaggaaag
ggaaggggagatatgatatacaattacattatcatttcagggacataaaa
actatatacaataaaaaagaatgaagggattaatttggcttggaattcaa
aggtgcaatgcatcatcaaggcagagaggtcatggactcagaaatctcag
gcagttggccactcatgaaactgtggtcaggaagtcgtgacaccgaaatg
acttattgtgttttgctatcttacttctcttttttcagtgtgggatcctc
tctgataaagtcatttctcgcacagtgagaggaggttagtctaccttttt
tttttcttttttgttttctctaatgtattttattctatttttattagata
ttttcttcatttacattgcaaatgctatcctgaaagttctccataccctc
cccacatcccgtgctgctacccacccactcccacttcttggccctgttgt
tcccctgtcctgggggcatataaagtttgcaagaccaagggtcctctctt
cccaatgatggccaactaggccatcttctgctacatatgcagctagagac
acaagctctggggggtactggttagttacctggggatacatcccacaatt
cagccaccaaacccagacactattgcatatgtcagcaagatttttctgaa
aggaccctgatatagctgtctcgtgtgagtctatgccagtgcctggcaaa
tacaggagtagatgctcacattcatctataggatggaacactagggcc

gaattcaattataaatgtgaaaattagctctcctgtggaaattaataatg
atgaatgtcccaatttattttagtgctacgtggtattttcatttgtcatg
atttaacatagagtctgctgtagcttcgatggaagttacaagagtagagg
gacatacaattgtagaagatttaatcactgactgggagacatccaaccct
aactgatacatgtagaacccaacccaacactcagggaagcccccagaaga
ggtgatggaaagattttaggaggcagaagacaaatatgcctgctttaaac
taacatcttttagatctattctagagggctgatcccagaataaacttgtt
tgatatacttagtgcaggcagtagccatgtaaattcgtgttctgctttgt
gtttggcatgttcctttcttacactcgcaggacacagagttcctgtgttc
atgaactgatgttgtgctaccatacgttccttgacttttcttatcctttg
aatcctttttaacttcttttctttattttaacttctaatgcttcatcatc
tcttctttaacagatattgaagtgttagcatcagattatatttttaaagt
agaataatcatgccaaggttgcatgaaatatgagtgaaatgtgtggtgaa
gtgatttttagatgtgaagtattaaacaatactccataaataacaggcag
tgagtaaatagtggattttaaattgtctcatggttcaaatgttgtaagac
atgataaagaacaagaaagtgaattattataccctgttactctgtttcaa
atctactctcttttgtaatttcaaagaaagcatttacttaaaatcattta
agagcataaatgcatgtctaagaacaattttgatagacactgtaattttt
caatcatcaggagaatcagtaacttaatggaaaggaatctaatttgctca
tgaattactgagctacaggctctgctgtgcttaacttaagtgtgcttgtt
cagactgcctgacgccacatcctgatactctcaaaataaattctaatagg
aagatctatgaacctgggggcaaccattttatttcagaggaagaaatgga
gcacgtgtagttgaatcctaataacaaaacaaggcaaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_109510018_109510536
seq2: B6Ng01-022K08.b_589_1004

seq1  CCTTTTTTTTTTCTTTTTTGAACTCCCTAAGATACATTTAATTCAGATAT  50
      ||||||||||||||||||||   || |||  ||  |||| ||||   |||
seq2  CCTTTTTTTTTTCTTTTTTGTTTTCTCTA--ATGTATTTTATTC---TAT  45

seq1  ACAAGACCTGACATTTGTGATTTTATGTCTTCAAGGCCTGATAGAAGCAG  100
              |   ||| |  ||||    ||||||    |  || | |  | 
seq2  --------TTTTATTAGATATTT----TCTTCATTTAC--ATTGCA-AAT  80

seq1  CCTATAGTG---GTTTT--GTTGCTAACTCACAGATGTAAATGTTAAGAA  145
       ||||  ||   ||| |   |  |   | ||||        || ||   |
seq2  GCTATCCTGAAAGTTCTCCATACCCTCCCCACATCCCGTGCTGCTACCCA  130

seq1  CATTTTCCTA-ATCTATTTCCT-TTAAACTACTTTGGGGAGGGTCATGAA  193
      |    ||| |  |||    ||| ||   |  || |   | ||| |||   
seq2  CCCACTCCCACTTCTTGGCCCTGTTGTTCCCCTGTCCTG-GGGGCAT---  176

seq1  AGTAAGATGGCCTACTCTAAAGTAAGATGGCCGACTCTCAAGTAAGATGG  243
      |  ||| | ||        |||    | || |  |||||           
seq2  ATAAAGTTTGC--------AAGACCAAGGGTC--CTCTC-----------  205

seq1  CCAATTCTCAAATGATCTGCACTTAGAAGAACCTTCTTTAAAACTTTGCC  293
          ||| | ||||||   ||  |||     || ||||            
seq2  ----TTC-CCAATGATGGCCAACTAG----GCCATCTT------------  234

seq1  CCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAA  343
       || ||                |||       | | || || ||| ||||
seq2  -CTGCT----------------ACA------TATGCAGCTAGAGACACAA  261

seq1  AGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCCACACCCA  393
        | ||| |  |  ||       |||      |||          |||  
seq2  GCTCTGGGG--GGTAC-------TGG-----TTAG--------TTACCTG  289

seq1  GGGATCCATCCCATAA-TCAGCCTTCAAACACTGACACCACTGCATACGC  442
      ||||| ||||||| || ||||||  ||||| | ||||| | |||||| | 
seq2  GGGATACATCCCACAATTCAGCCACCAAACCCAGACACTATTGCATATGT  339

seq1  CAGCAAGATTTTGCTGAAAGGACCCTGTTATAGCTGTCTCTTGTGAGTCT  492
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  CAGCAAGATTTTTCTGAAAGGACCCTGATATAGCTGTCTCGTGTGAGTCT  389

seq1  ATGACAGTGCCTGGCAAATACAGAAGT  519
      ||| ||||||||||||||||||| |||
seq2  ATGCCAGTGCCTGGCAAATACAGGAGT  416


seq1: chr5_11454194_11455356
seq2: B6Ng01-022K08.g_67_1207

seq1  GAATTCAATTATAAATGTGAAAATTAGCTCTCCTGTGGAAATTAATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATAAATGTGAAAATTAGCTCTCCTGTGGAAATTAATAATG  50

seq1  ATGAATGTCCCAATTTATTTTAGTGCTACGTGGTATTTTCATTTGTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTCCCAATTTATTTTAGTGCTACGTGGTATTTTCATTTGTCATG  100

seq1  ATTTAACATAGAGTCTGCTGTAGCTTCGATGGAAGTTACAAGAGTAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACATAGAGTCTGCTGTAGCTTCGATGGAAGTTACAAGAGTAGAGG  150

seq1  GACATACAATTGTAGAAGATTTAATCACTGACTGGGAGACATCCAACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACAATTGTAGAAGATTTAATCACTGACTGGGAGACATCCAACCCT  200

seq1  AACTGATACATGTAGAACCCAACCCAACACTCAGGGAAGCCCCCAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATACATGTAGAACCCAACCCAACACTCAGGGAAGCCCCCAGAAGA  250

seq1  GGTGATGGAAAGATTTTAGGAGGCAGAAGACAAATATGCCTGCTTTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGGAAAGATTTTAGGAGGCAGAAGACAAATATGCCTGCTTTAAAC  300

seq1  TAACATCTTTTAGATCTATTCTAGAGGGCTGATCCCAGAATAAACTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTTTTAGATCTATTCTAGAGGGCTGATCCCAGAATAAACTTGTT  350

seq1  TGATATACTTAGTGCAGGCAGTAGCCATGTAAATTCGTGTTCTGCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACTTAGTGCAGGCAGTAGCCATGTAAATTCGTGTTCTGCTTTGT  400

seq1  GTTTGGCATGTTCCTTTCTTACACTCGCAGGACACAGAGTTCCTGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCATGTTCCTTTCTTACACTCGCAGGACACAGAGTTCCTGTGTTC  450

seq1  ATGAACTGATGTTGTGCTACCATACGTTCCTTGACTTTTCTTATCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGATGTTGTGCTACCATACGTTCCTTGACTTTTCTTATCCTTTG  500

seq1  AATCCTTTTTAACTTCTTTTCTTTATTTTAACTTCTAATGCTTCATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTTTAACTTCTTTTCTTTATTTTAACTTCTAATGCTTCATCATC  550

seq1  TCTTCTTTAACAGATATTGAAGTGTTAGCATCAGATTATATTTTTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTAACAGATATTGAAGTGTTAGCATCAGATTATATTTTTAAAGT  600

seq1  AGAATAATCATGCCAAGGTTGCATGAAATATGAGTGAAATGTGTGGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATCATGCCAAGGTTGCATGAAATATGAGTGAAATGTGTGGTGAA  650

seq1  GTGATTTTTAGATGTGAAGTATTAAACAATACTCCATAAATAACAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTTAGATGTGAAGTATTAAACAATACTCCATAAATAACAGGCAG  700

seq1  TGAGTAAATAGTGGATTTTAAATTGTCTCATGGTTCAAATGTTGTAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAATAGTGGATTTTAAATTGTCTCATGGTTCAAATGTTGTAAGAC  750

seq1  ATGATAAAGAACAAGAAAGTGAATTATTATACCCTGTTACTCTGTTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAAGAACAAGAAAGTGAATTATTATACCCTGTTACTCTGTTTCAA  800

seq1  ATCTACTCTCTTTTGTAATTTCAAAGAAAGCATTTACTTAAAATCAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTACTCTCTTTTGTAATTTCAAAGAAAGCATTTACTTAAAATC-ATTT  849

seq1  AAGAGCATAAATGCATGTCTAAGAACAAATTTGATAGACACTGTAATTTT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGAGCATAAATGCATGTCTAAGAACAATTTTGATAGACACTGTAATTTT  899

seq1  TCAATCATCAGGAGAATCAAGTAACTTAATGGAAAGGAAATCTTAATTTG  950
      |||||||||||||||||| |||||||||||||||||| |||| |||||||
seq2  TCAATCATCAGGAGAATC-AGTAACTTAATGGAAAGG-AATC-TAATTTG  946

seq1  CTCATGAATTACTGAGCTACAGGCTCTTGCTGTGCTTTAACTTAAGTGTG  1000
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CTCATGAATTACTGAGCTACAGGCTC-TGCTGTGC-TTAACTTAAGTGTG  994

seq1  CTTGTCTCAGACTGCCTGAC-CCACAATCACTGATCATCTCAAAAATAAA  1049
      ||||| |||||||||||||| |||| ||| |||||  |||| ||||||||
seq2  CTTGT-TCAGACTGCCTGACGCCAC-ATC-CTGATACTCTC-AAAATAAA  1040

seq1  TTCTAATAGGAAGATCTATGGACCCTGGGGCAAACCATTTTTATTTCCAA  1099
      ||||||||||||||||||| || |||||||  ||||| |||||||||   
seq2  TTCTAATAGGAAGATCTAT-GAACCTGGGGGCAACCA-TTTTATTTC---  1085

seq1  AGAGGATAGAAATGGAGCATG-GTATTATGAATCCTAA-AACAAAACAAG  1147
      |||||| |||||||||||| | ||| | |||||||||| |||||||||||
seq2  AGAGGA-AGAAATGGAGCACGTGTAGT-TGAATCCTAATAACAAAACAAG  1133

seq1  ACAAAAGCCCAAGGCC  1163
               |||||||
seq2  --------GCAAGGCC  1141


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