BAC Information

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BAC

Clone NameB6Ng01-022O09
Chromosome13 (Build37)
Map Location 26,725,573 - 26,859,014
singlet/doubletdoublet
Overlap geneLOC100042191
Upstream geneLOC666221, LOC100042180
Downstream geneHdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022O09.bB6Ng01-022O09.g
ACCDH854973DH854974
length1,029998
definitionDH854973|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O09, 5' end.DH854974|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,857,979 - 26,859,014)(26,725,573 - 26,726,584)
sequence
gaattcagaagttagtaacctagcaattcaagtaataagtaatcaagaca
gtacctaatttctaaagagagtctctactttttatacataatgtctttat
aatgtagccatccaattagatagctactataatctctattttagacctaa
gggagttgagattcagagacactaactaattttcccaatggcagacgagt
actaagtgataaaccaagagtcagacataggttttctctcatcctacagc
acaggtgctttgttccactttattctttgctattatataaaactccaatt
cagttgagatcttttcctctcttctgttttgaagtgaacgtttagaaatt
tgtgaggaaaaaaaccagattaacaaacactgctcatatgtgtttaaaat
catctggggacatggcaattgttttgtgtacaaaagacttgatgaagtga
tggggacaattgtacattcagtacttttcaagatgcctaagactctagga
ggtttgaatagggattgttgtatttgccagagataaggataatattttga
tcctttttgtagacacacatcatccgaaatgactcagtaacctaaaagaa
ggaagttgagtttcatggccttcatgcccctgtctttgtgttgcttcttt
cctttttttgtgtgtttctattgttaagggatagaaaagggtatcattag
aagtagcactcacacctaccttcttctcaactgtaatgtggtagagcaaa
cagtgatctcagtgttagcacatctaatcaataatgtccccattttacaa
atccctgtttatgatcccacaaagaacaaaaaaaaatgtagaagtgggga
aaaaaggaatctgtgttctgaacccttttatcaaacaatagaaacatcat
gtgttgttgtgaccaagatgcttttatttcgcctgaaaattatgctggta
gaattctagaatcccagggtgtttttgtttccctctgaacacctgtttgt
tcatgacaaattacagatcaatgggtacc
gaattcatttcttttttttttttttttaaatgttctgccgggcgtggtgg
cacatgcctttaatcccagcactcgggaggcagaggcaggtggatttctg
agttcaaggcaagcctgggtctaaaagtgagctccaggacagccagggct
atacagagaaaccctgtctcagaaaaaaaaaaagtcacactaggtacagg
gataatttaaggtgttattgtggttttgttcattttcattctgtttttat
tcatgcatattccttaaattttacctttgaagaaaaacattagttggaca
tcaaggcttatcattttaagttgcaacatatgaattaaaagaaagtttga
aataatcgtattttcatattttagtgtgtcaaggatactcacaataaagt
tttggttaaactttttggggaatactgtaacataatggagaacctaagca
catgcaaaggctcaggagagtcagaataaactcactcactttgctgtgac
aaatgccatgggaaaacatcaacttgttctcagataataaagcttgacat
actaaaagcctagaaaaatgaaaagtatgaagaagcctcacatttgaaaa
ataaatgagaaataacagctgaaatgagaaaattacattagaagctactg
tcaaacaacaacaagttattattgtcgatccagcagcagtttgtaataat
taaattcaaaatatatttagagagacattcagtatctaaaagactatgag
ggcacatgaagacaatatcgactattgtgttactggtctggtaataaatg
tcttagtacaggaagagcatcaggaactaaatatttgagcagggataagg
tttttctttctttataccaattaatttttgcagatccattttggattatt
ctactgtttgaaacggtattctgtctccaagatagctggctcaaaacacc
gtaatttgaaaatatgacggtactttggcttctttggtgtatttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26857979_26859014
seq2: B6Ng01-022O09.b_41_1069 (reverse)

seq1  GGTAACCATTGATCTGTAATTCTGTCATTGAGCCATACA-GTGTTCAGAG  49
      |||| |||||||||||||||| ||||||  |  || ||| ||||||||||
seq2  GGTACCCATTGATCTGTAATT-TGTCATGAA--CAAACAGGTGTTCAGAG  47

seq1  GAAAACAAAAACAACCCTGGGATTCCTAGGAATTCTAAACAGCATAATTT  99
      | |||||||||| ||||||||||| ||| ||||||| | |||||||||||
seq2  GGAAACAAAAAC-ACCCTGGGATT-CTA-GAATTCT-ACCAGCATAATTT  93

seq1  TCAGGCCAAAATAAAAGCATCTTGGTCACCACAACACATGATGGTTTCTA  149
      ||||| | ||||||||||||||||||||| |||||||||||| |||||||
seq2  TCAGG-CGAAATAAAAGCATCTTGGTCACAACAACACATGAT-GTTTCTA  141

seq1  TTGTTTTGATAAAAGGGTTCAGAACACAGATTCCTTTTTTCCCCACTTCT  199
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTG-TTTGATAAAAGGGTTCAGAACACAGATTCCTTTTTTCCCCACTTCT  190

seq1  ACATTTTTTTTTGTTCTTTGTGGGATCATAAACA-GGATTTGTAAAATGG  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACATTTTTTTTTGTTCTTTGTGGGATCATAAACAGGGATTTGTAAAATGG  240

seq1  GGACATTATTGATTAGATGTGCTAACACTGAGATCACTGTTTGCTCTACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTATTGATTAGATGTGCTAACACTGAGATCACTGTTTGCTCTACC  290

seq1  ACATTACAGTTGAGAAGAAGGTAGGTGTGAGTGCTACTTCTAATGATACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACAGTTGAGAAGAAGGTAGGTGTGAGTGCTACTTCTAATGATACC  340

seq1  CTTTTCTAT-CCTTAACAATAGAAACACACAAAAAAAGGAAAGAAGCAAC  397
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTATCCCTTAACAATAGAAACACACAAAAAAAGGAAAGAAGCAAC  390

seq1  ACAAAGACAGGGGCATGAAGGCCATGAAACTCAACTTCCTTCTTTTAGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACAGGGGCATGAAGGCCATGAAACTCAACTTCCTTCTTTTAGGT  440

seq1  TACTGAGTCATTTCGGATGATGTGTGTCTACAAAAAGGATCAAAATATTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTCATTTCGGATGATGTGTGTCTACAAAAAGGATCAAAATATTA  490

seq1  TCCTTATCTCTGGCAAATACAACAATCCCTATTCAAACCTCCTAGAGTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATCTCTGGCAAATACAACAATCCCTATTCAAACCTCCTAGAGTCT  540

seq1  TAGGCATCTTGAAAAGTACTGAATGTACAATTGTCCCCATCACTTCATCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCTTGAAAAGTACTGAATGTACAATTGTCCCCATCACTTCATCA  590

seq1  AGTCTTTTGTACACAAAACAATTGCCATGTCCCCAGATGATTTTAAACAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTGTACACAAAACAATTGCCATGTCCCCAGATGATTTTAAACAC  640

seq1  ATATGAGCAGTGTTTGTTAATCTGGTTTTTTTCCTCACAAATTTCTAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGCAGTGTTTGTTAATCTGGTTTTTTTCCTCACAAATTTCTAAAC  690

seq1  GTTCACTTCAAAACAGAAGAGAGGAAAAGATCTCAACTGAATTGGAGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTTCAAAACAGAAGAGAGGAAAAGATCTCAACTGAATTGGAGTTT  740

seq1  TATATAATAGCAAAGAATAAAGTGGAACAAAGCACCTGTGCTGTAGGATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAGCAAAGAATAAAGTGGAACAAAGCACCTGTGCTGTAGGATG  790

seq1  AGAGAAAACCTATGTCTGACTCTTGGTTTATCACTTAGTACTCGTCTGCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACCTATGTCTGACTCTTGGTTTATCACTTAGTACTCGTCTGCC  840

seq1  ATTGGGAAAATTAGTTAGTGTCTCTGAATCTCAACTCCCTTAGGTCTAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGAAAATTAGTTAGTGTCTCTGAATCTCAACTCCCTTAGGTCTAAA  890

seq1  ATAGAGATTATAGTAGCTATCTAATTGGATGGCTACATTATAAAGACATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATTATAGTAGCTATCTAATTGGATGGCTACATTATAAAGACATT  940

seq1  ATGTATAAAAAGTAGAGACTCTCTTTAGAAATTAGGTACTGTCTTGATTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAAAAGTAGAGACTCTCTTTAGAAATTAGGTACTGTCTTGATTA  990

seq1  CTTATTACTTGAATTGCTAGGTTACTAACTTCTGAATTC  1036
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACTTGAATTGCTAGGTTACTAACTTCTGAATTC  1029

seq1: chr13_26725573_26726584
seq2: B6Ng01-022O09.g_70_1067

seq1  GAATTCATTTCTTTTTTTTTTTTTTTTAAATGTTCTGCCGGGCGTGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTTTTTTTTTTTTTTTAAATGTTCTGCCGGGCGTGGTGG  50

seq1  CACATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTG  100

seq1  AGTTCAAGGCAAGCCTGGGTCTAAAAGTGAGCTCCAGGACAGCCAGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCAAGCCTGGGTCTAAAAGTGAGCTCCAGGACAGCCAGGGCT  150

seq1  ATACAGAGAAACCCTGTCTCAGAAAAAAAAAAAGTCACACTAGGTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAAACCCTGTCTCAGAAAAAAAAAAAGTCACACTAGGTACAGG  200

seq1  GATAATTTAAGGTGTTATTGTGGTTTTGTTCATTTTCATTCTGTTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTAAGGTGTTATTGTGGTTTTGTTCATTTTCATTCTGTTTTTAT  250

seq1  TCATGCATATTCCTTAAATTTTACCTTTGAAGAAAAACATTAGTTGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATATTCCTTAAATTTTACCTTTGAAGAAAAACATTAGTTGGACA  300

seq1  TCAAGGCTTATCATTTTAAGTTGCAACATATGAATTAAAAGAAAGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCTTATCATTTTAAGTTGCAACATATGAATTAAAAGAAAGTTTGA  350

seq1  AATAATCGTATTTTCATATTTTAGTGTGTCAAGGATACTCACAATAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCGTATTTTCATATTTTAGTGTGTCAAGGATACTCACAATAAAGT  400

seq1  TTTGGTTAAACTTTTTGGGGAATACTGTAACATAATGGAGAACCTAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAAACTTTTTGGGGAATACTGTAACATAATGGAGAACCTAAGCA  450

seq1  CATGCAAAGGCTCAGGAGAGTCAGAATAAACTCACTCACTTTGCTGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAGGCTCAGGAGAGTCAGAATAAACTCACTCACTTTGCTGTGAC  500

seq1  AAATGCCATGGGAAAACATCAACTTGTTCTCAGATAATAAAGCTTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCATGGGAAAACATCAACTTGTTCTCAGATAATAAAGCTTGACAT  550

seq1  ACTAAAAGCCTAGAAAAATGAAAAGTATGAAGAAGCCTCACATTTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGCCTAGAAAAATGAAAAGTATGAAGAAGCCTCACATTTGAAAA  600

seq1  ATAAATGAGAAATAACAGCTGAAATGAGAAAATTACATTAGAAGCTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGAAATAACAGCTGAAATGAGAAAATTACATTAGAAGCTACTG  650

seq1  TCAAACAACAACAAGTTATTATTGTCGATCCAGCAGCAGTTTGTAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAACAACAAGTTATTATTGTCGATCCAGCAGCAGTTTGTAATAAT  700

seq1  TAAATTCAAAATATATTTAGAGAGACATTCAGTATCTAAAAGACTATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAAAATATATTTAGAGAGACATTCAGTATCTAAAAGACTATGAG  750

seq1  GGCACATGAAGACAATATCGACTATTGTGTTACT-GTCTGGTAAATAAAT  799
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  GGCACATGAAGACAATATCGACTATTGTGTTACTGGTCTGGT-AATAAAT  799

seq1  GTCTTAGTACAGGAAGAGCATCAGGAACTAAATATTTGAGCAGGGATAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTACAGGAAGAGCATCAGGAACTAAATATTTGAGCAGGGATAAG  849

seq1  GTTTTTCTTTCTTTATACCAATTAATTTTTTGCAAGATCCATTTTGGATT  899
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GTTTTTCTTTCTTTATACCAATTAA-TTTTTGC-AGATCCATTTTGGATT  897

seq1  ATTCTACTGTTTGAAACTGTATTCTGTCTCTCAAAGAATAGCTGGTCTCA  949
      ||||||||||||||||| |||||||||||| |||   |||||||| ||||
seq2  ATTCTACTGTTTGAAACGGTATTCTGTCTC-CAA--GATAGCTGG-CTCA  943

seq1  AAACAACCTTAATTTGAAAAATTATGACGGTACTTTGTCTTTCATTTGTT  999
      |||| ||| |||||||||||  ||||||||||||||| |||   |||| |
seq2  AAAC-ACCGTAATTTGAAAA--TATGACGGTACTTTGGCTT--CTTTGGT  988

seq1  GTTATATTTATTT  1012
      |   |||||||||
seq2  G---TATTTATTT  998