BAC Information

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BAC

Clone NameB6Ng01-022P12
Chromosome13 (Build37)
Map Location 58,583,117 - 58,712,145
singlet/doubletdoublet
Overlap geneLOC100041086, Slc28a3
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1
Downstream geneLOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1, Mak10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022P12.bB6Ng01-022P12.g
ACCDH855021DH855022
length1,041842
definitionDH855021|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P12, 5' end.DH855022|Mus musculus domesticus DNA, BAC clone: B6Ng01-022P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,583,117 - 58,584,165)(58,711,304 - 58,712,145)
sequence
gaattcaaaggcaggaaaaatctcaggtccagccagcagcaacagataac
agattttattgaaagagaagaaacatctacccacgaaggcacacagcgca
aaagacttcctaccacatggaaagggcatttgaaaactaaaacgtctttt
tctcctgcaggctgagggttttaagtggttttggtggttcggaatgggta
gtcccccattttacattggtcagcccagacaaagggagtgggctaattgt
ctcacagctcatgtccagggcctgttcatgagggcagcagaaagagggcc
cactgcaggtaaatggaagcctgccaggtctgtcctggctgaagacaaag
ccaggagaatgccttcttgcttatttatggcccttttctctgtctgcctg
tcaccggctatctgactcctgtattccctcagagcgatgctctccctgtt
tgggggagaggacagcctgttagactagcacagggtggggggcacccctt
tcttcttttaaatcactcggctcaagaggaagcccaagaactaaaaagtt
gctgcctccattcagtgatggactgcagccatcgctttagggcaaacctc
aggaaggtagccgtcttttcagaattgtcgacaaagaggaccagggcaaa
gtttcttccacagatgatggggtggggctcagtttctgtgtgtgaagtgc
tgtggtcactagcatcgtaaggcactccctaaatttccaagttggtgact
ttttatttatttatttaaaaaaaccctttttttaaaaaatcaattctttg
tgagtttcacattttgcaccctagtcccgctcacctcctagtcctcctac
atctgcccttcgcccttgcaacttccctaccatggggctcttttgaagat
cccgctcaaggtttaattaagaaccagaggcatctatattggttaaagct
gtgcccttttctgggctaataactcaggtaagtatctaaacttagcctga
cttctcaaatcctgtctttccacgtgccccatgcctgcttt
gaattccgagcccagtgagagcaagatgagcctggagctgaggccaacag
cccccagcgacctgggccgcagcaatgaagcctttcaggtgagcagggct
aaaggggaccaaataacccgctgttgtgagagaagtaaggagagtagtta
agagagcctagcagagccgtgggctccctgcggtgcagcaagaatgttaa
ttcttttatgggtacgctttaagcccttttttttttcttccaacttggac
tcgtctgggttggtaaacctgaaaagtctctttcaaagtctagtcttgat
ctggactgccctcctcactccggaaacaagctgccttcctctcccttcct
tgcccctggactcacaaacaagtttcaggatttatcctcaggttccttct
ccaagacctgggcaggggagagcaggcacctcagcccaggtggaatggag
ccaggatggcctacttatgcaaagcatatcgtcagccacgactgcctagt
atcggggctgggtgccacaggtggcccgtgagggaggccggtccctgagc
tgtaataccccgcctgccaggaacctggatttgagttgctccttatttga
catgcaacacgagagttttgaaaagacagggaaggctcagttacccttgg
gtttcctgggcacttaatgggcagaacataatttttaaataataacacaa
gtggcaggcaaaagtgcctgcataaacctcgtctcctcccccactactgg
cctttagtcacaacggtgcccagcccatagtttataggtataaggaaatt
aaactgataaaagacaagttgatgggaagggggtgggggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58583117_58584165
seq2: B6Ng01-022P12.b_45_1085

seq1  GAATTCAAAGGCAGGAAAAATCTCAGGTCCAGCCAGCAGCAACAGATAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCAGGAAAAATCTCAGGTCCAGCCAGCAGCAACAGATAAC  50

seq1  AGATTTTATTGAAAGAGAAGAAACATCTACCCACGAAGGCACACAGCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATTGAAAGAGAAGAAACATCTACCCACGAAGGCACACAGCGCA  100

seq1  AAAGACTTCCTACCACATGGAAAGGGCATTTGAAAACTAAAACGTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTTCCTACCACATGGAAAGGGCATTTGAAAACTAAAACGTCTTTT  150

seq1  TCTCCTGCAGGCTGAGGGTTTTAAGTGGTTTTGGTGGTTCGGAATGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCAGGCTGAGGGTTTTAAGTGGTTTTGGTGGTTCGGAATGGGTA  200

seq1  GTCCCCCATTTTACATTGGTCAGCCCAGACAAAGGGAGTGGGCTAATTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCATTTTACATTGGTCAGCCCAGACAAAGGGAGTGGGCTAATTGT  250

seq1  CTCACAGCTCATGTCCAGGGCCTGTTCATGAGGGCAGCAGAAAGAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTCATGTCCAGGGCCTGTTCATGAGGGCAGCAGAAAGAGGGCC  300

seq1  CACTGCAGGTAAATGGAAGCCTGCCAGGTCTGTCCTGGCTGAAGACAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGTAAATGGAAGCCTGCCAGGTCTGTCCTGGCTGAAGACAAAG  350

seq1  CCAGGAGAATGCCTTCTTGCTTATTTATGGCCCTTTTCTCTGTCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAATGCCTTCTTGCTTATTTATGGCCCTTTTCTCTGTCTGCCTG  400

seq1  TCACCGGCTATCTGACTCCTGTATTCCCTCAGAGCGATGCTCTCCCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGCTATCTGACTCCTGTATTCCCTCAGAGCGATGCTCTCCCTGTT  450

seq1  TGGGGGAGAGGACAGCCTGTTAGACTAGCACAGGGTGGGGGGCACCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGAGGACAGCCTGTTAGACTAGCACAGGGTGGGGGGCACCCCTT  500

seq1  TCTTCTTTTAAATCACTCGGCTCAAGAGGAAGCCCAAGAACTAAAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTAAATCACTCGGCTCAAGAGGAAGCCCAAGAACTAAAAAGTT  550

seq1  GCTGCCTCCATTCAGTGATGGACTGCAGCCATCGCTTTAGGGCAAACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCATTCAGTGATGGACTGCAGCCATCGCTTTAGGGCAAACCTC  600

seq1  AGGAAGGTAGCCGTCTTTTCAGAATTGTCGACAAAGAGGACCAGGGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGTAGCCGTCTTTTCAGAATTGTCGACAAAGAGGACCAGGGCAAA  650

seq1  GTTTCTTCCACAGATGATGGGGTGGGGCTCAG-TTCTGTGTGTGAAGTGC  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTTCTTCCACAGATGATGGGGTGGGGCTCAGTTTCTGTGTGTGAAGTGC  700

seq1  TGTGGTCACTAGCATCGTAAGGCACTCCCTAAATTTCCAAGTTGGTGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCACTAGCATCGTAAGGCACTCCCTAAATTTCCAAGTTGGTGACT  750

seq1  TTTTATTTATTTATTTAAAAAAACCCTTTTTTTAAAAAAATCAATTCTTT  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTATTTATTTATTTAAAAAAACCCTTTTTTT-AAAAAATCAATTCTTT  799

seq1  GTGAGTTTCACATTTTGCACCCTAGTCCCGCTCACCTCCTAGTCCTCCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTCACATTTTGCACCCTAGTCCCGCTCACCTCCTAGTCCTCCTA  849

seq1  CATCTGCCCTTCGCCCTTGCAACCTTCCCTACCATGGGGCTCTTTTGAAG  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATCTGCCCTTCGCCCTTGCAA-CTTCCCTACCATGGGGCTCTTTTGAAG  898

seq1  ATCCCGCTCAAGGTTTAATTAAGACACAGAGGCATCTATATAGTTTAAAG  949
      ||||||||||||||||||||||||  ||||||||||||||| | ||||||
seq2  ATCCCGCTCAAGGTTTAATTAAGAACCAGAGGCATCTATATTGGTTAAAG  948

seq1  CTGTTGCCCTTTTTCTGGGCTAATATCTCAGTTAGCTATCTAAACTTATC  999
      ||| ||||| ||||||||||||||| ||||| ||  |||||||||||| |
seq2  CTG-TGCCC-TTTTCTGGGCTAATAACTCAGGTAAGTATCTAAACTTAGC  996

seq1  CTGACTTCTCCATAATCCTGTCTTTCCACGTGTCCCTCATTGCCTGCTTT  1049
      ||||||||||   ||||||||||||||||||| |||    ||||||||||
seq2  CTGACTTCTC--AAATCCTGTCTTTCCACGTGCCCC---ATGCCTGCTTT  1041

seq1: chr13_58711304_58712145
seq2: B6Ng01-022P12.g_70_911 (reverse)

seq1  GCTCCCCCACCCCCTTCCCATCAACTTGTCTTTTATCAGTTTAATTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCCACCCCCTTCCCATCAACTTGTCTTTTATCAGTTTAATTTCCT  50

seq1  TATACCTATAAACTATGGGCTGGGCACCGTTGTGACTAAAGGCCAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTATAAACTATGGGCTGGGCACCGTTGTGACTAAAGGCCAGTAGT  100

seq1  GGGGGAGGAGACGAGGTTTATGCAGGCACTTTTGCCTGCCACTTGTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGAGACGAGGTTTATGCAGGCACTTTTGCCTGCCACTTGTGTTA  150

seq1  TTATTTAAAAATTATGTTCTGCCCATTAAGTGCCCAGGAAACCCAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAATTATGTTCTGCCCATTAAGTGCCCAGGAAACCCAAGGGT  200

seq1  AACTGAGCCTTCCCTGTCTTTTCAAAACTCTCGTGTTGCATGTCAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCCTTCCCTGTCTTTTCAAAACTCTCGTGTTGCATGTCAAATAA  250

seq1  GGAGCAACTCAAATCCAGGTTCCTGGCAGGCGGGGTATTACAGCTCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAACTCAAATCCAGGTTCCTGGCAGGCGGGGTATTACAGCTCAGGG  300

seq1  ACCGGCCTCCCTCACGGGCCACCTGTGGCACCCAGCCCCGATACTAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCCTCCCTCACGGGCCACCTGTGGCACCCAGCCCCGATACTAGGCA  350

seq1  GTCGTGGCTGACGATATGCTTTGCATAAGTAGGCCATCCTGGCTCCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGCTGACGATATGCTTTGCATAAGTAGGCCATCCTGGCTCCATTC  400

seq1  CACCTGGGCTGAGGTGCCTGCTCTCCCCTGCCCAGGTCTTGGAGAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGCTGAGGTGCCTGCTCTCCCCTGCCCAGGTCTTGGAGAAGGAA  450

seq1  CCTGAGGATAAATCCTGAAACTTGTTTGTGAGTCCAGGGGCAAGGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGATAAATCCTGAAACTTGTTTGTGAGTCCAGGGGCAAGGAAGGG  500

seq1  AGAGGAAGGCAGCTTGTTTCCGGAGTGAGGAGGGCAGTCCAGATCAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGCAGCTTGTTTCCGGAGTGAGGAGGGCAGTCCAGATCAAGAC  550

seq1  TAGACTTTGAAAGAGACTTTTCAGGTTTACCAACCCAGACGAGTCCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTGAAAGAGACTTTTCAGGTTTACCAACCCAGACGAGTCCAAGT  600

seq1  TGGAAGAAAAAAAAAAGGGCTTAAAGCGTACCCATAAAAGAATTAACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAAAAAAAAAGGGCTTAAAGCGTACCCATAAAAGAATTAACATT  650

seq1  CTTGCTGCACCGCAGGGAGCCCACGGCTCTGCTAGGCTCTCTTAACTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCACCGCAGGGAGCCCACGGCTCTGCTAGGCTCTCTTAACTACT  700

seq1  CTCCTTACTTCTCTCACAACAGCGGGTTATTTGGTCCCCTTTAGCCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACTTCTCTCACAACAGCGGGTTATTTGGTCCCCTTTAGCCCTGC  750

seq1  TCACCTGAAAGGCTTCATTGCTGCGGCCCAGGTCGCTGGGGGCTGTTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAAAGGCTTCATTGCTGCGGCCCAGGTCGCTGGGGGCTGTTGGC  800

seq1  CTCAGCTCCAGGCTCATCTTGCTCTCACTGGGCTCGGAATTC  842
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTCCAGGCTCATCTTGCTCTCACTGGGCTCGGAATTC  842