BAC Information

Click to search

BAC

Clone NameB6Ng01-023G21
Chromosome13 (Build37)
Map Location 45,142,965 - 45,262,535
singlet/doubletdoublet
Overlap geneHsp25-ps1, LOC100039502
Upstream geneA730030A06, EG637868, EG667157, Jarid2, Dtnbp1
Downstream geneLOC667204, LOC100039533, Mylip, Gmpr, Atxn1, 5033430I15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023G21.bB6Ng01-023G21.g
ACCDH855352DH855353
length807937
definitionDH855352|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G21, 5' end.DH855353|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,142,965 - 45,143,767)(45,261,896 - 45,262,535)
sequence
gaattcttcctcatgatgctcggaagaaatcacttcttacatcctaactt
tgaacttttgggcttcaggatggtaaggcaataactttctgttacactgt
ttaaactacctagtttgaggtgactctcccaagtcctggtagagcattta
cttagcatgcatgaggctgtggacttgatcctcataccacataacgccag
gcatgggggcacatgcctacagtcccaacagaatgggttggagtatcatt
cttggctgtagaacaagagcatttgtggaggaatgtcagtattcacctct
taaagaaagagggaaagaaacaaataaacatcttatgatctgatctccag
gacacaaatatcctaagaattaacacaaaatgtagaccaaactataatca
agatacaatgtgtttagggagacacagtggcaggagccatgccatggaat
tctggggacgcatcggtgaagagaagcaattaccatatgacttgtgagca
ctttctagttaagagaagaaagaaaaaggcatgtttaggtacatggaata
gattttggaattttatctcacatgtaaagaaaagtatgttctgataaact
aggcatgtagaaataaatatccccactcacccatgattaaggcttttgaa
ttctatgagccctcagtatattttaacccatttgtcaaactaggaaagtt
gtgagatcattttccctataaactaaatcacaggtagaactgtgatattt
gataaaaatgcaagcccctgtggggagtgtgcacagtggtcttggggggg
gggttga
gaattcctccatcagacaggccggtggcatgtctgaggagcggagagggg
acattgtcttgatagctaaaaaggatgccatacttcaattgataatctgt
gattcaccattttatactgaatattaaattgcacagattcattcactcat
attgttttttgtggttcactcatttgattggcgtgtaattttctactgtg
tatttacactttacatttattctccagtcagtggtcatttaggttatccc
caaagttttgctattataaagtgttcctatttcttttgtctgttgttttg
agatatcccatgtagcacagacgggtctcaaactttccacatagccaagt
ctggccttgaggtctgatcttccatctccacctcccagctgcctgaagtt
ccacactcagcttcttcctacctgctctctcatatctgatgtggtgacat
aaatgaaaatggcccccacaagcccaaaagggagtgagtgacattagagc
cttgttggagcaggtgtagtcttgttggaggaaatgtgtcactggggttg
ggctttgaggtttcagaagctcaagctaggcccagtatctctctcttcct
gctgcctgacaatctggatgtagaactctcagctcctttgccagcaccat
gtctgcctttgtgccaccgtgcttcccactatgaccataaaagactaaac
ctctggcactctaaaccaacctctgatgaaatattttccttattaagaga
tgccatggtcatagtgtctcttcacaggaatagaaattctaagacacgtg
cacaagagtgcacataagggcacttatgaattatatagtatggaatattt
catttcccaagtaatgacaactactttccagagtatgcccatgttttcag
tatgtatgggggagctctgtggcctttgtgccctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45142965_45143767
seq2: B6Ng01-023G21.b_37_843

seq1  GAATTCTTCCTCATGATGCTCGGAAGAAATCACTTCTTACATCCTAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTCATGATGCTCGGAAGAAATCACTTCTTACATCCTAACTT  50

seq1  TGAACTTTTGGGCTTCAGGATGGTAAGGCAATAACTTTCTGTTACACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTGGGCTTCAGGATGGTAAGGCAATAACTTTCTGTTACACTGT  100

seq1  TTAAACTACCTAGTTTGAGGTGACTCTCCCAAGTCCTGGTAGAGCATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTACCTAGTTTGAGGTGACTCTCCCAAGTCCTGGTAGAGCATTTA  150

seq1  CTTAGCATGCATGAGGCTGTGGACTTGATCCTCATACCACATAACGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCATGCATGAGGCTGTGGACTTGATCCTCATACCACATAACGCCAG  200

seq1  GCATGGGGGCACATGCCTACAGTCCCAACAGAATGGGTTGGAGTATCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGGCACATGCCTACAGTCCCAACAGAATGGGTTGGAGTATCATT  250

seq1  CTTGGCTGTAGAACAAGAGCATTTGTGGAGGAATGTCAGTATTCACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGTAGAACAAGAGCATTTGTGGAGGAATGTCAGTATTCACCTCT  300

seq1  TAAAGAAAGAGGGAAAGAAACAAATAAACATCTTATGATCTGATCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGAGGGAAAGAAACAAATAAACATCTTATGATCTGATCTCCAG  350

seq1  GACACAAATATCCTAAGAATTAACACAAAATGTAGACCAAACTATAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAATATCCTAAGAATTAACACAAAATGTAGACCAAACTATAATCA  400

seq1  AGATACAATGTGTTTAGGGAGACACAGTGGCAGGAGCCATGCCATGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAATGTGTTTAGGGAGACACAGTGGCAGGAGCCATGCCATGGAAT  450

seq1  TCTGGGGACGCATCGGTGAAGAGAAGCAATTACCATATGACTTGTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGACGCATCGGTGAAGAGAAGCAATTACCATATGACTTGTGAGCA  500

seq1  CTTTCTAGTTAAGAGAAGAAAGAAAAAGGCATG-TTAGGTACATGGAATA  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTTCTAGTTAAGAGAAGAAAGAAAAAGGCATGTTTAGGTACATGGAATA  550

seq1  GATTTTGGAATTTTATCTCACATGTAAAGAAAAGTATGTTCTGATAAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGAATTTTATCTCACATGTAAAGAAAAGTATGTTCTGATAAACT  600

seq1  AGGCATGTAGAAATAAATATCCCCACTCACCCATGATTAAGGC-TTTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGCATGTAGAAATAAATATCCCCACTCACCCATGATTAAGGCTTTTGAA  650

seq1  TTCTATGAGCCCTCAGTATATTTTAACCCA-TTGTCAAACTAGGAAAGTT  697
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTATGAGCCCTCAGTATATTTTAACCCATTTGTCAAACTAGGAAAGTT  700

seq1  GTGAGATCATTTTCCCTATAAACTAAATCACAGGTAGAACTGTGATATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATCATTTTCCCTATAAACTAAATCACAGGTAGAACTGTGATATTT  750

seq1  GATAAAAATGCAAGCCCCTGTGGGGAGTGTGCACAGTGGTCTT-GGGGGG  796
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATAAAAATGCAAGCCCCTGTGGGGAGTGTGCACAGTGGTCTTGGGGGGG  800

seq1  GGGTTGA  803
      |||||||
seq2  GGGTTGA  807

seq1: chr13_45261896_45262535
seq2: B6Ng01-023G21.g_71_710 (reverse)

seq1  CAAAGGAGCTGAGAGTTCTACATCCAGATTGTCAGGCAGCAGGAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGCTGAGAGTTCTACATCCAGATTGTCAGGCAGCAGGAAGAGAG  50

seq1  AGATACTGGGCCTAGCTTGAGCTTCTGAAACCTCAAAGCCCAACCCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGGGCCTAGCTTGAGCTTCTGAAACCTCAAAGCCCAACCCCAGT  100

seq1  GACACATTTCCTCCAACAAGACTACACCTGCTCCAACAAGGCTCTAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTTCCTCCAACAAGACTACACCTGCTCCAACAAGGCTCTAATGT  150

seq1  CACTCACTCCCTTTTGGGCTTGTGGGGGCCATTTTCATTTATGTCACCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTCCCTTTTGGGCTTGTGGGGGCCATTTTCATTTATGTCACCAC  200

seq1  ATCAGATATGAGAGAGCAGGTAGGAAGAAGCTGAGTGTGGAACTTCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATATGAGAGAGCAGGTAGGAAGAAGCTGAGTGTGGAACTTCAGGC  250

seq1  AGCTGGGAGGTGGAGATGGAAGATCAGACCTCAAGGCCAGACTTGGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGAGGTGGAGATGGAAGATCAGACCTCAAGGCCAGACTTGGCTAT  300

seq1  GTGGAAAGTTTGAGACCCGTCTGTGCTACATGGGATATCTCAAAACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGTTTGAGACCCGTCTGTGCTACATGGGATATCTCAAAACAACA  350

seq1  GACAAAAGAAATAGGAACACTTTATAATAGCAAAACTTTGGGGATAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGAAATAGGAACACTTTATAATAGCAAAACTTTGGGGATAACCT  400

seq1  AAATGACCACTGACTGGAGAATAAATGTAAAGTGTAAATACACAGTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCACTGACTGGAGAATAAATGTAAAGTGTAAATACACAGTAGAA  450

seq1  AATTACACGCCAATCAAATGAGTGAACCACAAAAAACAATATGAGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACGCCAATCAAATGAGTGAACCACAAAAAACAATATGAGTGAAT  500

seq1  GAATCTGTGCAATTTAATATTCAGTATAAAATGGTGAATCACAGATTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTGCAATTTAATATTCAGTATAAAATGGTGAATCACAGATTATC  550

seq1  AATTGAAGTATGGCATCCTTTTTAGCTATCAAGACAATGTCCCCTCTCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAGTATGGCATCCTTTTTAGCTATCAAGACAATGTCCCCTCTCCG  600

seq1  CTCCTCAGACATGCCACCGGCCTGTCTGATGGAGGAATTC  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGACATGCCACCGGCCTGTCTGATGGAGGAATTC  640