BAC Information

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BAC

Clone NameB6Ng01-023P05
Chromosome13 (Build37)
Map Location 51,614,953 - 51,711,747
singlet/doubletdoublet
Overlap geneShc3
Upstream geneGm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3
Downstream geneCks2, Secisbp2, Sema4d, Gadd45g, LOC100040321, Diras2, LOC100040572, Syk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023P05.bB6Ng01-023P05.g
ACCDH855728DH855729
length1,013908
definitionDH855728|Mus musculus domesticus DNA, BAC clone: B6Ng01-023P05, 5' end.DH855729|Mus musculus domesticus DNA, BAC clone: B6Ng01-023P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,711,206 - 51,711,747)(51,614,953 - 51,615,646)
sequence
gaattctgtatacatcccaatagctagtggtctcccataaactaacgctg
atagtcaacttggtggcatatagggtcacatagattacctcctgggcgtg
cttatgagggactttgttaagttagcctctgggtgtgtcttatctagatt
gggctagttgaggtaagaagacccaccccaagtgagtgtgacatcatctc
gtgggctaggattctagacttaaaaaagagagagtgaggagggcactggc
gttcatctgtttcctgactgtggctgccctgcgaccagctgtcttgcacc
ccctctaggatctccacagtatgatggaccagccggtgagcagaataaac
tcctccttccattgcttttgttagtcattgcatcacggaagtgagcgaag
agttgtccaacacagtgtgcataagcctttgtttgttgccccaagcacat
gcaggcgaccagctggactttgccgagctgggagcaggctactaaccttg
aacactcagggcaccgtcccagggaaagggaacaactcagagcttggctt
agctttacgagattcagatgaggtttatatttccaaggcatttcccaact
gtgagccaaagggataaagtcacagaaaagaccagagggactcccagaat
ccctagctcgggtgagtagtggatgcctgtctctttaaagccattcagta
atgactggacacgcctgcttttccagatgtgtcggtagcaacacaaggct
tcaagaacacggaaaatcagaaatgtcagtgagctgtaagggaacacaca
gaggtcattgtgagaccactctccatggatggaatgagaagttctgcaga
ggtggaaacctaaaacaaaaagaaaccaaaatcctagagttttggaactg
aggatgcatggagtagctagaagcatgatagagtacacagcaggctgact
agcagaaacgattctgtatcttgaaagggcccttgagtttcctttagtca
gagaaaagaaatt
gaattcatgaatgaatgaatgaatgaatgaatgaatgaaaatgtttgatg
ctagaaacacactggtgttggcattttctcaaaggaaatatgaagacaca
ttcattcgtgaatatatggaactaatagtttcatctcaggaggaagagac
taagggagaagcctcctaaagcttgtggacaatatcatggggagtgtcaa
gaggtgaactcattcccactaaggtctgggacttagtaaaggtgtgcgtt
ttttccactgctgttcagcagagatggaagtcctagccaggacaatcggt
aagtcaaagaaacacaccacattggaatagaaaaggaaggaattaaactg
ccactgtctgcatgtgtcacacacacacacacacacacacctagtagaat
aataaataaagagtaattaatagtgataacaaattcagccaagcggcagg
atacaaaatcaatgcaatcaaatcaatatcttgtctccacatccataaca
agttacctgaaaagagctcaagaaagcaaagacatttataacacttcccc
aaaataacatccccaaagataggttaattaaagagatgaaagttctctgc
attggaaataataaaatgtttatggggggagcggggaatggaagaaggca
catacaggctgaaagatatccctagtttgtagatgggaaagataaatcct
actaaatgttcatattacccacagaaatgttcagattcaatgtcatccat
atgaaaaatatcttcctacagaagaacatcctaaaattttatatagaaca
acaacaaaaaaagccagagaacaaagtcattattggtgaaaacagctgta
agcatcaccatatctgactaggttcaaaacagactgcaaagctacagttg
tactgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_51711206_51711747
seq2: B6Ng01-023P05.b_46_587 (reverse)

seq1  CTCTGAGTTGTTCCCTTTCCCTGGGACGGTGCCCTGAGTGTTCAAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTGTTCCCTTTCCCTGGGACGGTGCCCTGAGTGTTCAAGGTTA  50

seq1  GTAGCCTGCTCCCAGCTCGGCAAAGTCCAGCTGGTCGCCTGCATGTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTGCTCCCAGCTCGGCAAAGTCCAGCTGGTCGCCTGCATGTGCTT  100

seq1  GGGGCAACAAACAAAGGCTTATGCACACTGTGTTGGACAACTCTTCGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAACAAACAAAGGCTTATGCACACTGTGTTGGACAACTCTTCGCTC  150

seq1  ACTTCCGTGATGCAATGACTAACAAAAGCAATGGAAGGAGGAGTTTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCGTGATGCAATGACTAACAAAAGCAATGGAAGGAGGAGTTTATTC  200

seq1  TGCTCACCGGCTGGTCCATCATACTGTGGAGATCCTAGAGGGGGTGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCGGCTGGTCCATCATACTGTGGAGATCCTAGAGGGGGTGCAAG  250

seq1  ACAGCTGGTCGCAGGGCAGCCACAGTCAGGAAACAGATGAACGCCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGTCGCAGGGCAGCCACAGTCAGGAAACAGATGAACGCCAGTGC  300

seq1  CCTCCTCACTCTCTCTTTTTTAAGTCTAGAATCCTAGCCCACGAGATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCACTCTCTCTTTTTTAAGTCTAGAATCCTAGCCCACGAGATGAT  350

seq1  GTCACACTCACTTGGGGTGGGTCTTCTTACCTCAACTAGCCCAATCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTCACTTGGGGTGGGTCTTCTTACCTCAACTAGCCCAATCTAGA  400

seq1  TAAGACACACCCAGAGGCTAACTTAACAAAGTCCCTCATAAGCACGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACACCCAGAGGCTAACTTAACAAAGTCCCTCATAAGCACGCCCA  450

seq1  GGAGGTAATCTATGTGACCCTATATGCCACCAAGTTGACTATCAGCGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAATCTATGTGACCCTATATGCCACCAAGTTGACTATCAGCGTTA  500

seq1  GTTTATGGGAGACCACTAGCTATTGGGATGTATACAGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGGAGACCACTAGCTATTGGGATGTATACAGAATTC  542

seq1: chr13_51614953_51615646
seq2: B6Ng01-023P05.g_69_762

seq1  GAATTCATGAATGAATGAATGAATGAATGAATGAATGAAAATGTTTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATGAATGAATGAATGAATGAATGAATGAAAATGTTTGATG  50

seq1  CTAGAAACACACTGGTGTTGGCATTTTCTCAAAGGAAATATGAAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACACACTGGTGTTGGCATTTTCTCAAAGGAAATATGAAGACACA  100

seq1  TTCATTCGTGAATATATGGAACTAATAGTTTCATCTCAGGAGGAAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCGTGAATATATGGAACTAATAGTTTCATCTCAGGAGGAAGAGAC  150

seq1  TAAGGGAGAAGCCTCCTAAAGCTTGTGGACAATATCATGGGGAGTGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGAAGCCTCCTAAAGCTTGTGGACAATATCATGGGGAGTGTCAA  200

seq1  GAGGTGAACTCATTCCCACTAAGGTCTGGGACTTAGTAAAGGTGTGCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAACTCATTCCCACTAAGGTCTGGGACTTAGTAAAGGTGTGCGTT  250

seq1  TTTTCCACTGCTGTTCAGCAGAGATGGAAGTCCTAGCCAGGACAATCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACTGCTGTTCAGCAGAGATGGAAGTCCTAGCCAGGACAATCGGT  300

seq1  AAGTCAAAGAAACACACCACATTGGAATAGAAAAGGAAGGAATTAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAGAAACACACCACATTGGAATAGAAAAGGAAGGAATTAAACTG  350

seq1  CCACTGTCTGCATGTGTCACACACACACACACACACACACCTAGTAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCTGCATGTGTCACACACACACACACACACACACCTAGTAGAAT  400

seq1  AATAAATAAAGAGTAATTAATAGTGATAACAAATTCAGCCAAGCGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAGAGTAATTAATAGTGATAACAAATTCAGCCAAGCGGCAGG  450

seq1  ATACAAAATCAATGCAATCAAATCAATATCTTGTCTCCACATCCATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATCAATGCAATCAAATCAATATCTTGTCTCCACATCCATAACA  500

seq1  AGTTACCTGAAAAGAGCTCAAGAAAGCAAAGACATTTATAACACTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTGAAAAGAGCTCAAGAAAGCAAAGACATTTATAACACTTCCCC  550

seq1  AAAATAACATCCCCAAAGATAGGTTAATTAAAGAGATGAAAGTTCTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACATCCCCAAAGATAGGTTAATTAAAGAGATGAAAGTTCTCTGC  600

seq1  ATTGGAAATAATAAAATGTTTATGGGGGGAGCGGGGAATGGAAGAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAATAATAAAATGTTTATGGGGGGAGCGGGGAATGGAAGAAGGCA  650

seq1  CATACAGGCTGAAAGATATCCCTAGTTTGTAGATGGGAAAGATA  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGCTGAAAGATATCCCTAGTTTGTAGATGGGAAAGATA  694