BAC Information

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BAC

Clone NameB6Ng01-024H02
Chromosome13 (Build37)
Map Location 90,041,770 - 90,042,665
singlet/doubletsinglet
Overlap geneXrcc4
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
Downstream geneTmem167, LOC100043170, LOC624190, EG435376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024H02.b
ACCDH856076
length891
definitionDH856076|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H02, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtgtgtggttgccttcgaatgatgttataagtcaataatagtg
gttttcctcgtctgataatttactttttattcttgagtccacaaaatttc
atgtgtactgttttatccttgaacagctctgaaagaaatttgaaaatact
tcataagaattagatagcaatgcttttactattatgtatatgtttataaa
aaagaaactttaaagtatctatatattggttagttttgtagtattaattt
aaagaactacagtggtttaaaagacaatggccgacagaggctcatagttg
aatgcctagactcttgtttttggacagtttaggtaaagattaggaggtct
gacctcgttggtggagatatgccactgggggtaggctgtgagttttccaa
agaccaacagtaggcccagtttctttttttgtttctttttgtttttgttt
ttgtttgtctgcttgcctgtctacctccacatgctgtcaggcccagcctt
ccttcctccctccttcccttcctccttctctttgccttcacttgtagaat
aggatgtaagctgtaagttcacaccattgttctagccagccgaagacttt
ctgaaacggtaagcaagccagtaaaaagactttagaagttaagtaggtca
tggcatctgttcacagtaatagaaaagtaactaagataaagacaattcta
agtcttcttcacttaacaccacaaatgcttctctacttatgaagtgtaac
ccttttcttagatattcttatgtaatagatatcgaataagggaatagatg
ggaggattctgtctgtccaggaaagggaaatagaatagacagttatggat
ggatggtggtggctaaatgtacgattatgtggggagctata
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90041770_90042665
seq2: B6Ng01-024H02.b_36_927

seq1  GGAATTCAAGTGTGTGGTTGCCTTCGAATGATGTTATAAGTCAATAATAG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTC-AGTGTGTGGTTGCCTTCGAATGATGTTATAAGTCAATAATAG  49

seq1  TGGTTTTCCTCATCTGATAATTTACTTTTTATTCTTGAGTCCACAAAATT  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCCTCGTCTGATAATTTACTTTTTATTCTTGAGTCCACAAAATT  99

seq1  TCATGTGTACTGTTTTATCCTTGAACAGCTCTGAAAGAAATTTGAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTACTGTTTTATCCTTGAACAGCTCTGAAAGAAATTTGAAAATA  149

seq1  CTTCAGAAGAATTAGATAGCAATGCTTTTACTATTATGTATATGTTTATA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAAGAATTAGATAGCAATGCTTTTACTATTATGTATATGTTTATA  199

seq1  AAAAAGAAACTTTAAAGTATCTATATATTGGTTAGTTTTGTAGTATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAACTTTAAAGTATCTATATATTGGTTAGTTTTGTAGTATTAAT  249

seq1  TTAAAGAACTACAGTGGTTTAAAAGACAATGGCCGACAGAGGCTCATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAACTACAGTGGTTTAAAAGACAATGGCCGACAGAGGCTCATAGT  299

seq1  TGAATGCCTAGACTCTTGTTTTTGGACAGTTTAGGTAAAGATTAGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCTAGACTCTTGTTTTTGGACAGTTTAGGTAAAGATTAGGAGGT  349

seq1  CTGACCTCGTTGGTGGAGATATGCCACTGGGGGTAGGCTGTGAGTTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCGTTGGTGGAGATATGCCACTGGGGGTAGGCTGTGAGTTTTCC  399

seq1  AAAGACCAACAGTAGGCCCAGTTTCTTTTTTTGTTTCTTTTTGTTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAACAGTAGGCCCAGTTTCTTTTTTTGTTTCTTTTTGTTTTTGT  449

seq1  TTTTGTTTGTCTGCTTGCCTGTCTACCTCCACATGCTGTCAGGCCCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTCTGCTTGCCTGTCTACCTCCACATGCTGTCAGGCCCAGCC  499

seq1  TTCCTTCCTCCCTCCTTCCCTTCCTCCTTCTCTTTGCCTTCACTTGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTCCCTCCTTCCCTTCCTCCTTCTCTTTGCCTTCACTTGTAGA  549

seq1  ATAGGATGTAAGCTGTAAGTTCACACCATTGTTCTAGCCAGCCGAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGTAAGCTGTAAGTTCACACCATTGTTCTAGCCAGCCGAAGACT  599

seq1  TTCTGAAACGGTAAGCAAGCCAGTAAAAAGACTTTAGAAGTTAAGTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACGGTAAGCAAGCCAGTAAAAAGACTTTAGAAGTTAAGTAGGT  649

seq1  CATGGCATCTGTTCACAGTAATAGAAAAGTAACTAAGATAAAGACAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATCTGTTCACAGTAATAGAAAAGTAACTAAGATAAAGACAATTC  699

seq1  TAAGTCTTCTTCACTTAACACCACAAATGCTTCTCTACTTATGAAGTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTCTTCACTTAACACCACAAATGCTTCTCTACTTATGAAGTGTA  749

seq1  ACCCTTTTCTTAGATATTCTTATGTAATAGATATCGAATAAGGGAATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTCTTAGATATTCTTATGTAATAGATATCGAATAAGGGAATAGA  799

seq1  TGGGAGGATTCTGTCTGTCCAGGAAAGGGAAATAGAATAGACAGTTATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGATTCTGTCTGTCCAGGAAAGGGAAATAGAATAGACAGTTATGG  849

seq1  ATGGATGGTGGTGGCTAAAATGTAGGATTAAAGTGGGGAGCATATA  896
      |||||||||||||||| ||||||| |||| | ||||||||| ||||
seq2  ATGGATGGTGGTGGCT-AAATGTACGATT-ATGTGGGGAGC-TATA  892