BAC Information

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BAC

Clone NameB6Ng01-024H16
Chromosome13 (Build37)
Map Location 8,855,026 - 8,968,593
singlet/doubletdoublet
Overlap geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2
Upstream geneLOC791083, LOC382722, Adarb2, EG666941
Downstream geneGtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024H16.bB6Ng01-024H16.g
ACCDH856103DH856104
length1,047984
definitionDH856103|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H16, 5' end.DH856104|Mus musculus domesticus DNA, BAC clone: B6Ng01-024H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,855,026 - 8,856,088)(8,967,600 - 8,968,593)
sequence
gaattcaaagcagaataaaaaaatacagaaaattttttcctttaaatagt
atgatgggccaaagggttaaataaatttcctttttaaaaagcacatatag
gaatgtatttaaaaaaaaaaaaaaaaaaaaaaacctaaagtgaagctatt
ttaaaattcttttgatttacctctaatacatcaacatgtttttggaaatt
ttcaagaaaggatatattaaggtttatataatttatggtatgcttggtat
ataaaaaaaatggaatgtattcattttgtataaaacttcagttctggttg
tttgatctgacaagccctcaaagattctcagggcccagccctatgatgcc
tgttaacacgggggttaccctctaagttcgggggttctgcaggtagaggg
ggttaccctggaatatctcggggctcaatcaaatcacatattctcaggac
tacaacagacagaaaggcaaatcagagaggaaacaaaaggaaccattgca
tcaccaaaggagatgggcacatgagccaaagaaacagcaaaggggccagt
cctaaaagcacaattaatgcattctgtcaccacacaaaagaagcaggaaa
tgtttgttcctggagggtgcagaaaggaacacaactctgccaggattcaa
catcactctggcaagaatcatactaggcccacagaactgtaagggttttt
ttatattactttattttgtatgggtgttcttcctgcatgtatgtccatat
actacacaaacgtctgctatcctctgaggtcagaagagggcattggatct
cctgaaatggaaattacattgtgagcagtcaggtagatgctaactaagaa
ctgaacccaggacttctgaagagcagccatgttcttacagctgagccact
gctccaacccattaatatggttaagtcagcagtttaacacagaacagaaa
tgattaaagtgatgacccctcacccacaattatgtcccagacttcttggt
aataataatttttaaaaacatagaacggagataccacattctagttt
gaattccagtgcaaaaattgctgaatttaaatgttgcagcagaacagggg
tgatggcataaaagacatcctggagtttcaattttttttttttaattttt
caagaaaattgtctaagcttggtgtaaaagcttggcacatggttttgatt
ccaacacctgggaggcagaagtagatggatttttgagtgggatgctagcc
tggtctacagtgaattccaggacagtcagagctatatagtaaggccctgt
attggcaaaaaaaaaagaaagaaaagaaacataactaataaaattactgg
tagcaaggagtctaagaagcaatgaaatagaaggctgattttgttttctc
ttcactagaaatcagtgaggtaaactgaccttttccaggttttttgatga
ctgaaccttttagcacaattctcatagtaaagattatgacctttggtcat
tattgataaatatattcacaataacatttgaccaagcaaatgtatccctt
gatccacaccaacgaacgttaaattgtttgactttgccactgttttatgc
atagaagatagacttaatgcttggtgctggggctcagcgctggcttaggt
aaaaatacagcaggaagtacttgattatgctcatcagctccacaaagagt
ccttgtggaatctgtgaacccagtgaaaaccaaggaagctctttgttatc
catatccatatccatcctcactcaccattatgccacctggagagagaacc
ttggacaggtgagcctgtgttacccatgggagagtggtgtcaccagggga
aaggtttaggagaaaactgacactttccatagatgatattgaaaaattta
agagctggagagagagagcaattaaatgaagagcttgaatttagtttagt
gcattaaaggaattagtattcagtttctgtaacatgacagttttacatgg
gttagtatgaaccaacttttcttctttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_8855026_8856088
seq2: B6Ng01-024H16.b_33_1079

seq1  GAATTCAAAGCAGAATAAAAAAATACAGAAAATGTTTTCCTTTAAATAGT  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCAAAGCAGAATAAAAAAATACAGAAAATTTTTTCCTTTAAATAGT  50

seq1  ATGATGGGCCAAAGGGTTAAATAAATTTCCTTTTTAAAAAGCACATATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGCCAAAGGGTTAAATAAATTTCCTTTTTAAAAAGCACATATAG  100

seq1  GAATGTATTT-AAAAAAAAAAAAAAAAAAAAAACCTAAAGTGAAGCTATT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTTAAAAAAAAAAAAAAAAAAAAAAACCTAAAGTGAAGCTATT  150

seq1  TTAAAATTCTTTTGATTTACCTCTAATACATCAACATGTTTTTGGAAATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCTTTTGATTTACCTCTAATACATCAACATGTTTTTGGAAATT  200

seq1  TTCAAGAAAGGATATATTAAGGTTTATATAATTTATGGTATGCTTGGTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAGGATATATTAAGGTTTATATAATTTATGGTATGCTTGGTAT  250

seq1  ATAAAAAAAATGGAATGTATTCATTTTGTATAAAACTTCAGTTCTGGTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAATGGAATGTATTCATTTTGTATAAAACTTCAGTTCTGGTTG  300

seq1  TTTGATCTGACAAGCCCTCAAAGATTCTCAGGGCCCAGCCCTATGATGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTGACAAGCCCTCAAAGATTCTCAGGGCCCAGCCCTATGATGCC  350

seq1  TGTTAACACGGGGGTTACCCTCTAAGTTCGGGGGTTCTGCAGGTAGAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACACGGGGGTTACCCTCTAAGTTCGGGGGTTCTGCAGGTAGAGGG  400

seq1  GGTTACCCTGGAATATCTCGGGGCTCAATCAAATCACATATTCTCAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCCTGGAATATCTCGGGGCTCAATCAAATCACATATTCTCAGGAC  450

seq1  TACAACAGACAGAAAGGCAAATCAGAGAGGAAACAAAAGGAACCATTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGACAGAAAGGCAAATCAGAGAGGAAACAAAAGGAACCATTGCA  500

seq1  TCACCAAAGGAGATGGGCACATGAGCCAAAGAAACAGCAAAGGGGCCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAGGAGATGGGCACATGAGCCAAAGAAACAGCAAAGGGGCCAGT  550

seq1  CCTAAAAGCACAATTAATGCATTCTGTCACCACACAAAAGAAGCAGGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGCACAATTAATGCATTCTGTCACCACACAAAAGAAGCAGGAAA  600

seq1  TGTTTGTTCCTGGAGGGTGCAGAAAGGAACACAACTCTGCCAGGATTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCCTGGAGGGTGCAGAAAGGAACACAACTCTGCCAGGATTCAA  650

seq1  CATCACTCTGGCAAGAATCATACTAGGCCCACAGAACTGTAAGGGTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTCTGGCAAGAATCATACTAGGCCCACAGAACTGTAAGGGTTTTT  700

seq1  TTATATTACTTTA-TTTGTATGGGTGTTCTTCCTGCATGTATGTCCATAT  748
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTATATTACTTTATTTTGTATGGGTGTTCTTCCTGCATGTATGTCCATAT  750

seq1  ACTACACAAACGTCTGCTATCCTCTGAGGTCAGAAGAGGGCATTGGATCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAAACGTCTGCTATCCTCTGAGGTCAGAAGAGGGCATTGGATCT  800

seq1  CCTGAAATGGAAATTACAGTGTGAGCAGTCAGGTAGATGCTAACTAAGAA  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGAAATGGAAATTACATTGTGAGCAGTCAGGTAGATGCTAACTAAGAA  850

seq1  CTGAACCCAGGACTTCTGAAGAGCAGCCAATGTTCTTAACAGCTGAGCCA  898
      |||||||||||||||||||||||||||| |||||||| ||||||||||||
seq2  CTGAACCCAGGACTTCTGAAGAGCAGCC-ATGTTCTT-ACAGCTGAGCCA  898

seq1  CTGCTCCAACCCAATAATATGGTTAAGTCAGCAGGTTTAACAACAGAACA  948
      ||||||||||||| ||||||||||||||||||| ||||||| ||||||||
seq2  CTGCTCCAACCCATTAATATGGTTAAGTCAGCA-GTTTAAC-ACAGAACA  946

seq1  GAAATGAATAGAGTGATGACTCTCAACCCACAAATATTGTTCTCCAAGAC  998
      ||||||| || ||||||||| |   |||||||| ||    | ||| ||||
seq2  GAAATGATTAAAGTGATGACCCCTCACCCACAATTA----TGTCCCAGAC  992

seq1  TTCTATGGATAAATAATAATTTTTTAAAAATACAATAAGATAGGAGATAC  1048
      |||| |||   |||||||||||||   ||| |||   |||  ||||||||
seq2  TTCT-TGG--TAATAATAATTTTT---AAAAACA--TAGAACGGAGATAC  1034

seq1  TCACATTCTAAGTTT  1063
       |||||||| |||||
seq2  -CACATTCT-AGTTT  1047

seq1: chr13_8967600_8968593
seq2: B6Ng01-024H16.g_69_1052 (reverse)

seq1  AAAAAAGAAAGA--AAAAGTTGGGTTCATTACTAACCCATGGTTAAAACT  48
      |||||| |||||  ||||||| |||||| ||||||||||||  |||||||
seq2  AAAAAAAAAAGAAGAAAAGTT-GGTTCA-TACTAACCCATG--TAAAACT  46

seq1  GTCATGTTTAACAGAAACTTGAATACTAATTTCCTTTAATTGCACTAAAC  98
      ||||||||  |||||||| |||||||||| ||||||||| ||||||||||
seq2  GTCATGTT--ACAGAAAC-TGAATACTAA-TTCCTTTAA-TGCACTAAAC  91

seq1  TAAAATTCAAGCTCTTCATTTTAATTGCTTCTCTCTCTCCAGCTCTTAAA  148
      | |||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  T-AAATTCAAGCTCTTCA-TTTAATTGC-TCTCTCTCTCCAGCTCTTAAA  138

seq1  TTTTTTCAATATCATCTATGGAAAGTGTCAGTTTTCTCCTAAAACCTTCC  198
       |||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  -TTTTTCAATATCATCTATGGAAAGTGTCAGTTTTCTCCTAAACCTTTCC  187

seq1  CCTGGTGACACCACTCTCCCATGGGTAACACAGGCTCACCTGTCCAAGGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACACCACTCTCCCATGGGTAACACAGGCTCACCTGTCCAAGGT  237

seq1  TCTCTCTCCAGGTGGCAT-ATGGTGAGTGAGGATGGATATGGATATGGAT  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTCTCTCCAGGTGGCATAATGGTGAGTGAGGATGGATATGGATATGGAT  287

seq1  AACAAAGAGCTTCCTTGGTTTTCACTGGGTTCACAGATTCCACAAGGACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAGCTTCCTTGGTTTTCACTGGGTTCACAGATTCCACAAGGACT  337

seq1  CTTTGTGGAGCTGATGAGCATAATCAAGTACTTCCTGCTGTATTTTTACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGAGCTGATGAGCATAATCAAGTACTTCCTGCTGTATTTTTACC  387

seq1  TAAGCCAGCGCTGAGCCCCAGCACCAAGCATTAAGTCTATCTTCTATGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGCGCTGAGCCCCAGCACCAAGCATTAAGTCTATCTTCTATGCA  437

seq1  TAAAACAGTGGCAAAGTCAAACAATTTAACGTTCGTTGGTGTGGATCAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTGGCAAAGTCAAACAATTTAACGTTCGTTGGTGTGGATCAAG  487

seq1  GGATACATTTGCTTGGTCAAATGTTATTGTGAATATATTTATCAATAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACATTTGCTTGGTCAAATGTTATTGTGAATATATTTATCAATAATG  537

seq1  ACCAAAGGTCATAATCTTTACTATGAGAATTGTGCTAAAAGGTTCAGTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGTCATAATCTTTACTATGAGAATTGTGCTAAAAGGTTCAGTCA  587

seq1  TCAAAAAACCTGGAAAAGGTCAGTTTACCTCACTGATTTCTAGTGAAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAACCTGGAAAAGGTCAGTTTACCTCACTGATTTCTAGTGAAGAG  637

seq1  AAAACAAAATCAGCCTTCTATTTCATTGCTTCTTAGACTCCTTGCTACCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCAGCCTTCTATTTCATTGCTTCTTAGACTCCTTGCTACCA  687

seq1  GTAATTTTATTAGTTATGTTTCTTTTCTTTCTTTTTTTTTTGCCAATACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTATTAGTTATGTTTCTTTTCTTTCTTTTTTTTTTGCCAATACA  737

seq1  GGGCCTTACTATATAGCTCTGACTGTCCTGGAATTCACTGTAGACCAGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTACTATATAGCTCTGACTGTCCTGGAATTCACTGTAGACCAGGC  787

seq1  TAGCATCCCACTCAAAAATCCATCTACTTCTGCCTCCCAGGTGTTGGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCCCACTCAAAAATCCATCTACTTCTGCCTCCCAGGTGTTGGAAT  837

seq1  CAAAACCATGTGCCAAGCTTTTACACCAAGCTTAGACAATTTTCTTGAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATGTGCCAAGCTTTTACACCAAGCTTAGACAATTTTCTTGAAA  887

seq1  AATTAAAAAAAAAAAATTGAAACTCCAGGATGTCTTTTATGCCATCACCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAAAAAAAATTGAAACTCCAGGATGTCTTTTATGCCATCACCC  937

seq1  CTGTTCTGCTGCAACATTTAAATTCAGCAATTTTTGCACTGGAATTC  994
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGCTGCAACATTTAAATTCAGCAATTTTTGCACTGGAATTC  984