BAC Information

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BAC

Clone NameB6Ng01-024J08
Chromosome13 (Build37)
Map Location 89,837,910 - 89,992,820
singlet/doubletdoublet
Overlap geneVcan, LOC100042940, Xrcc4
Upstream geneEdil3, Hapln1, EG667266
Downstream geneTmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024J08.bB6Ng01-024J08.g
ACCDH856172DH856173
length8901,114
definitionDH856172|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J08, 5' end.DH856173|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,837,910 - 89,838,797)(89,991,690 - 89,992,820)
sequence
gaattctctaaaaatttatttctaaaaaataatacagcaaatatgggctg
gagagatcattcagtagattaaaattctggctgttcttccgtaggatcgg
ggttagagtcctaggacctacacagcagttccaaaactgactactgacta
taactccagttgcaggggattcaacactctctctggcctctgtaggtacc
aggcatgcaagtggagcacagacatacattcaggcaaagcactcatacat
ataactttttgaattgaccaaataaaggctaaccataaagttgaacattg
ctatccattttgctttagttctctagcacttgagtcctttgatgtacata
catacacatagatatagatacagataaacagacagatattatcagatatt
ttaaaattgataacttaaaagtaaggaagtctttgattacaatatagtga
aggactctaataagtaagtttataacttcttctaaaattatatccactaa
gctacagagtagaaacaactctattttgccattcctttgtcaaacgttaa
ccttgcttctcttcaaatagactcctttaatgggttgttcaaacagccct
acctactggcccacaatcactccgctccttcctttctctgctgacatctc
tgtactgtacatgatggggctgcaattctagaatcctagttcaatacctc
attcctggttcagcatgcttcaaaatgatagcatcttaatttcctctttt
ttttttttttttttttttttttgcctcgcccttctatttatgaagtctca
gttcataaagataaatgctagatagacagatgccactctcacagaaaaaa
ttggctgtgttttttcatcttggggcctaggattcacatt
gaattctccttttggaaccatcgtcccatagtaaattctgaaatctactg
aatcctaagtactaatataaacttatacctctttgtaatgtagtaattta
ttctctgtgagcaaattacaagattcttgagccaccaataaaatgtgagg
attaaaagacacacttgtaagcattataagaaaagggtgactgaaaacta
gactcatagtttttctactttttctttatttttaagattctaatataatt
atatcattcctcccttccctttcttgcctctggacccttacatatgtccc
ctctttctctcttttacattcataacttttctttcaattgttttatatgc
acatcttccagactgacgatttactgttgaacaaccaatcgatgtgctcc
tccctggaaagactatttctcctattctcagcattctttagttgcctgta
attcttgtgcagggctggagccccctgggctttcccaagtccactgtagc
atctctgttggtgctgtccttgttcggctcttatttcggcagtcacgttg
gtgagaacccgcagctgtagcttctgacattgtaggctatgcattctcat
agcttagactctttgtgctcctcttctgtagcgtcccctaagcctttgtt
ggtttgtttggtagacgtgtcattggaattggttccacatcactgcattt
agattggttgtgattttctgtactttaataaaccaacataatctctgact
acattctaaacatttatccttctgcccacaggtaactgtactcttcatgc
ctcatcagggaaactttataacagacacagagatcgtgttttatattctc
tatatcttttatacttccttaacacagtgaactgttcaaagcacatacat
aataaatattggttgatcaatacagatacatatagaaagtagtgtctctg
ccacccaagtgctagaattgagactgtgtgcacagtgccaggcctgaggc
atgaaactaatcactcagtaccaaccaccaaatgatattgcatcaaatta
aatgatggagtattatgtgctaaactttccaaccataaagatcctcgaca
attggtcaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89837910_89838797
seq2: B6Ng01-024J08.b_45_934

seq1  GAATTCTCTAAAAATTTATTTCTAAAAAATAATACAGCAAATATGGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAAATTTATTTCTAAAAAATAATACAGCAAATATGGGCTG  50

seq1  GAGAGATCATTCAGTAGATTAAAATTCTGGCTGTTCTTCCGTAGGATCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCATTCAGTAGATTAAAATTCTGGCTGTTCTTCCGTAGGATCGG  100

seq1  GGTTAGAGTCCTAGGACCTACACAGCAGTTCCAAAACTGACTACTGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGTCCTAGGACCTACACAGCAGTTCCAAAACTGACTACTGACTA  150

seq1  TAACTCCAGTTGCAGGGGATTCAACACTCTCTCTGGCCTCTGTAGGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGTTGCAGGGGATTCAACACTCTCTCTGGCCTCTGTAGGTACC  200

seq1  AGGCATGCAAGTGGAGCACAGACATACATTCAGGCAAAGCACTCATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCAAGTGGAGCACAGACATACATTCAGGCAAAGCACTCATACAT  250

seq1  ATAACTTTTTGAATTGACCAAATAAAGGCTAACCATAAAGTTGAACATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTTGAATTGACCAAATAAAGGCTAACCATAAAGTTGAACATTG  300

seq1  CTATCCATTTTGCTTTAGTTCTCTAGCACTTGAGTCCTTTGATGTACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCATTTTGCTTTAGTTCTCTAGCACTTGAGTCCTTTGATGTACATA  350

seq1  CATACACATAGATATAGATACAGATAAACAGACAGATATTATCAGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATAGATATAGATACAGATAAACAGACAGATATTATCAGATATT  400

seq1  TTAAAATTGATAACTTAAAAGTAAGGAAGTCTTTGATTACAATATAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTGATAACTTAAAAGTAAGGAAGTCTTTGATTACAATATAGTGA  450

seq1  AGGACTCTAATAAGTAAGTTTATAACTTCTTCTAAAATTATATCCACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTAATAAGTAAGTTTATAACTTCTTCTAAAATTATATCCACTAA  500

seq1  GCTACAGAGTAGAAACAACTCTATTTTGCCATTCCTTTGTCAAACGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAGTAGAAACAACTCTATTTTGCCATTCCTTTGTCAAACGTTAA  550

seq1  CCTTGCTTCTCTTCAAATAGACTCCTTTAATGGGTTGTTCAAACAGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTCTCTTCAAATAGACTCCTTTAATGGGTTGTTCAAACAGCCCT  600

seq1  ACCTACTGGCCCACAATCACTCCGCTCCTTCCTTTCTCTGCTGACATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGGCCCACAATCACTCCGCTCCTTCCTTTCTCTGCTGACATCTC  650

seq1  TGTACTGTACATGATGGGGCTGCAATTCTAGAATCCTAGTTCAATACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGTACATGATGGGGCTGCAATTCTAGAATCCTAGTTCAATACCTC  700

seq1  ATTCCTGGTTCAGCATGCTTCAAAATGATAGCATCTTAATTTCCTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGTTCAGCATGCTTCAAAATGATAGCATCTTAATTTCCTCTTTT  750

seq1  TTTTTTTTTTTTTTTTTTTTTTGCATCGCCCTTCTATTTATGAAGTCTCA  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTGCCTCGCCCTTCTATTTATGAAGTCTCA  800

seq1  GTTCAGATAGATAAATGCTAGATAGACAGATGCCACTCTCACAGAGAAAA  850
      ||||| | ||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTCATAAAGATAAATGCTAGATAGACAGATGCCACTCTCACAGAAAAAA  850

seq1  -TGGCTGTGTTTTTACATC-TGGGGCCTAGGACTCACATT  888
       ||||||||||||| |||| |||||||||||| |||||||
seq2  TTGGCTGTGTTTTTTCATCTTGGGGCCTAGGATTCACATT  890

seq1: chr13_89991690_89992820
seq2: B6Ng01-024J08.g_67_1180 (reverse)

seq1  CTTCCTTGAACAATGTGTCTGAGGTATCTTTATGTGTTGGAAAGTTTAG-  49
      ||||||||| |||| |||| |||| ||||||||| |||||||||||||| 
seq2  CTTCCTTGACCAAT-TGTC-GAGG-ATCTTTATG-GTTGGAAAGTTTAGC  46

seq1  ACATAAATACTTCATTCATTTTAATTTGGATGCAATAATCATTTGGTGGT  99
      |||| |||||| || ||| |||||||| |||||||| |||||||||||||
seq2  ACAT-AATACTCCA-TCA-TTTAATTT-GATGCAAT-ATCATTTGGTGGT  91

seq1  TGGTACTTGAGTTGATTAGTTTTCATTGCCCTCAGGCCTGGCACTGTGGC  149
      |||||| |||| ||||||| ||||||   |||||||||||||||||| ||
seq2  TGGTAC-TGAG-TGATTAG-TTTCAT--GCCTCAGGCCTGGCACTGT-GC  135

seq1  ACACAGTCTCAATTCTAGCACTTGGGTGGCAGAGACACCTACTTTCTAAT  199
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  ACACAGTCTCAATTCTAGCACTTGGGTGGCAGAGACA-CTACTTTCT-AT  183

seq1  ATGTATCTGTATTGATTCAACCAATATTTATTATGTATGTGCTTTGAACA  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGTATTGA-TCAACCAATATTTATTATGTATGTGCTTTGAACA  232

seq1  GTTCACTGTGTTAAGGAAGTATAAAAGATATAGAGAATATAAAACACGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGTGTTAAGGAAGTATAAAAGATATAGAGAATATAAAACACGAT  282

seq1  CTCTGTGTCTGTTATAAAGTTTCCCTGATGAGGCATGAAGAGTACAGTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCTGTTATAAAGTTTCCCTGATGAGGCATGAAGAGTACAGTTA  332

seq1  CCTGTGGGCAGAAGGATAAATGTTTAGAATGTAGTCAGAGATTATGTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGCAGAAGGATAAATGTTTAGAATGTAGTCAGAGATTATGTTGG  382

seq1  TTTATTAAAGTACAGAAAATCACAACCAATCTAAATGCAGTGATGTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAAGTACAGAAAATCACAACCAATCTAAATGCAGTGATGTGGAA  432

seq1  CCAATTCCAATGACACGTCTACCAAACAAACCAACAAAGGCTTAGGGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCCAATGACACGTCTACCAAACAAACCAACAAAGGCTTAGGGGAC  482

seq1  GCTACAGAAGAGGAGCACAAAGAGTCTAAGCTATGAGAATGCATAGCCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGAAGAGGAGCACAAAGAGTCTAAGCTATGAGAATGCATAGCCTA  532

seq1  CAATGTCAGAAGCTACAGCTGCGGGTTCTCACCAACGTGACTGCCGAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAGAAGCTACAGCTGCGGGTTCTCACCAACGTGACTGCCGAAAT  582

seq1  AAGAGCCGAACAAGGACAGCACCAACAGAGATGCTACAGTGGACTTGGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCGAACAAGGACAGCACCAACAGAGATGCTACAGTGGACTTGGGA  632

seq1  AAGCCCAGGGGGCTCCAGCCCTGCACAAGAATTACAGGCAACTAAAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGGGGGCTCCAGCCCTGCACAAGAATTACAGGCAACTAAAGAAT  682

seq1  GCTGAGAATAGGAGAAATAGTCTTTCCAGGGAGGAGCACATCGATTGGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAATAGGAGAAATAGTCTTTCCAGGGAGGAGCACATCGATTGGTT  732

seq1  GTTCAACAGTAAATCGTCAGTCTGGAAGATGTGCATATAAAACAATTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACAGTAAATCGTCAGTCTGGAAGATGTGCATATAAAACAATTGAA  782

seq1  AGAAAAGTTATGAATGTAAAAGAGAGAAAGAGGGGACATATGTAAGGGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTATGAATGTAAAAGAGAGAAAGAGGGGACATATGTAAGGGTC  832

seq1  CAGAGGCAAGAAAGGGAAGGGAGGAATGATATAATTATATTAGAATCTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAAGAAAGGGAAGGGAGGAATGATATAATTATATTAGAATCTTA  882

seq1  AAAATAAAGAAAAAGTAGAAAAACTATGAGTCTAGTTTTCAGTCACCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAAAAAGTAGAAAAACTATGAGTCTAGTTTTCAGTCACCCTT  932

seq1  TTCTTATAATGCTTACAAGTGTGTCTTTTAATCCTCACATTTTATTGGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAATGCTTACAAGTGTGTCTTTTAATCCTCACATTTTATTGGTG  982

seq1  GCTCAAGAATCTTGTAATTTGCTCACAGAGAATAAATTACTACATTACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGAATCTTGTAATTTGCTCACAGAGAATAAATTACTACATTACAA  1032

seq1  AGAGGTATAAGTTTATATTAGTACTTAGGATTCAGTAGATTTCAGAATTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTATAAGTTTATATTAGTACTTAGGATTCAGTAGATTTCAGAATTT  1082

seq1  ACTATGGGACGATGGTTCCAAAAGGAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  ACTATGGGACGATGGTTCCAAAAGGAGAATTC  1114