BAC Information

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BAC

Clone NameB6Ng01-024O03
Chromosome13 (Build37)
Map Location 118,277,137 - 118,383,266
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041169, Parp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024O03.bB6Ng01-024O03.g
ACCDH856388DH856389
length1,122906
definitionDH856388|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O03, 5' end.DH856389|Mus musculus domesticus DNA, BAC clone: B6Ng01-024O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,382,125 - 118,383,266)(118,277,137 - 118,278,043)
sequence
gaattctgtctctgctgcgagcaattaccccaaaatacagctcagtttca
ttcatctattctctgtattttctctggttttaccttaattctacacaggg
gctgacctttttttcttgaaaggcaaggtgtttgactgaagccatagagg
tcattttcacccagaaaatgagttttctgactggaatgtaaatttctcac
acactaaaccaattctagtaaagaaaaaaacaaaaacaaaaacaaatact
agtatgtcctctgtggaatctattcgtcactaagtcactaacactttata
tacttagtgtgtctggtattcccagtttctctgccttctcagccttaact
acttcttcctgcattacctcattatagcataaactcgaaggctaaagaca
gaggcagaacaaagctgggccatccttctaatcccaatcctatcaggaga
tgattgccccagtaagcagaagcttcagccccggtggtgtcccctaaacc
ctattacctctctaattacacagcctacctgtctctcccccaacctctcc
tccagcctgacacatctgcttgctcttctgaaaacctagaactggtaatt
gcaaggcaagatgtagtagtccctagtctttctacctggaagagcccaga
tgtttgctttagggactctgctcactagcaccttctctgaccattctcat
gaaaaggatacgtctcatccagtttgaattttctctactattcactaccc
catctggcaagctacatgctttatatcttacttatgaaaacactattttg
ccctctaaaatacagggccctggggctttgacattagcatattgtcatct
agtgttttctgatgaattgtattgaaatgtaaggaaataggtaagacatt
tttgtttctcctccaagtaaaacttataacaaagacagaaatatttctca
cttagttttttttttttattgttgctttaatgcagttaaaggtttgaggg
tatctcaccaatggagaatttatatattcttttattttcatttaaattta
ttacactcattaatcacccagaatttcatttaggtcatggcataatgaga
aaaaaaagtcttaaaccgtaat
gaattcttttgaacaggattcatttttgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgaatcttgactgtcagtgagtgtccattcctggactgtaga
catttcacatatttagcacattaataagattcttcattttgaggacttac
caggttcatttagaccccagaattcccaacctgcacaatcctatttctcc
ttccagcattaacttaaggcaatcttaatgtgatagtgtgtgtagtagtg
taggaccaactgagactattaggccattataaatatgaagttggggattt
tattactacatactgctgaatattgttttaactttatttgttggtgtgat
acaaatttaaatagaatactattccttttctatcttacatattacatggt
cctactgcctagctaggaaaaatgttgtagtatatttagcattcgtttta
gtatatattaattcctggaaaatacggcaacataataagctttgcattga
tttctatggacctctcattgtttcaataacccatattattgcatctggtc
tggatgattcatatttctggttgttacttctaagcttctcccatatcttt
atgcagctccatggcatatgtgaagctctgactgtttgtgtgcaaagaag
ttgacctcttttctgttcatccatctcagaaagtacttcatcctcagcaa
cacatttctttagtgccgtggactcatttaatttctttctttctatgtat
catatctttgataagtaaatagtatttttaaggtacaattaaccttattt
taaggttaaactaatttaagtatataatagattttgcagttctagctacc
atatttaatttctgttttaaatgaagtttctttagggcatgggaagggga
ctgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118382125_118383266
seq2: B6Ng01-024O03.b_48_1169 (reverse)

seq1  ATTATGGTTCAAGACTTTTTTTTCTTCATTATGCAATGACATGAAATGAA  50
      |||| |||| |||||||||||||| ||||||||| ||||| | |||||||
seq2  ATTACGGTTTAAGACTTTTTTTTC-TCATTATGCCATGACCT-AAATGAA  48

seq1  ATTCTCTTGGGTGTATAATGAGGTGTATAGAAAATTTAAAATGAAAATAA  100
      ||||   ||||||  |||||| |||||   | || || ||||||||||||
seq2  ATTC---TGGGTGATTAATGA-GTGTA---ATAAATTTAAATGAAAATAA  91

seq1  AATAGAAATATATAAATTCTTCCATTGGTTGAAGATACCCTCAAACCTTT  150
      ||    ||||||||||||| |||||||||   ||||||||||||||||||
seq2  AA---GAATATATAAATTC-TCCATTGGT--GAGATACCCTCAAACCTTT  135

seq1  AACTGCATTAAAAGCAACAATAAAAAAAAAAAAACTAAGTGAGAAATATT  200
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  AACTGCATT-AAAGCAACAAT-AAAAAAAAAAAACTAAGTGAGAAATATT  183

seq1  TCTGTCTTTTGTTATAAGTTTTTACCTTGGAGGAGAAACAAAAATGTCTT  250
      |||||| |||||||||||||||   |||||||||||||||||||||||||
seq2  TCTGTC-TTTGTTATAAGTTTT--ACTTGGAGGAGAAACAAAAATGTCTT  230

seq1  ACCTATTTCCTTACATTTCAATACAATTCATCAGAAAACACTAGATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTCCTTACATTTCAATACAATTCATCAGAAAACACTAGATGACA  280

seq1  ATATGCTAATGTCAAAGCCCCAGGGCCCTGTATTTTAGAGGGCAAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAATGTCAAAGCCCCAGGGCCCTGTATTTTAGAGGGCAAAATAG  330

seq1  TGTTTTCATAAGTAAGATATAAAGCATGTAGCTTGCCAGATGGGGTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATAAGTAAGATATAAAGCATGTAGCTTGCCAGATGGGGTAGTG  380

seq1  AATAGTAGAGAAAATTCAAACTGGATGAGACGTATCCTTTTCATGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGAGAAAATTCAAACTGGATGAGACGTATCCTTTTCATGAGAAT  430

seq1  GGTCAGAGAAGGTGCTAGTGAGCAGAGTCCCTAAAGCAAACATCTGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGAAGGTGCTAGTGAGCAGAGTCCCTAAAGCAAACATCTGGGCT  480

seq1  CTTCCAGGTAGAAAGACTAGGGACTACTACATCTTGCCTTGCAATTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGTAGAAAGACTAGGGACTACTACATCTTGCCTTGCAATTACCA  530

seq1  GTTCTAGGTTTTCAGAAGAGCAAGCAGATGTGTCAGGCTGGAGGAGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGTTTTCAGAAGAGCAAGCAGATGTGTCAGGCTGGAGGAGAGGT  580

seq1  TGGGGGAGAGACAGGTAGGCTGTGTAATTAGAGAGGTAATAGGGTTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGAGACAGGTAGGCTGTGTAATTAGAGAGGTAATAGGGTTTAGG  630

seq1  GGACACCACCGGGGCTGAAGCTTCTGCTTACTGGGGCAATCATCTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCACCGGGGCTGAAGCTTCTGCTTACTGGGGCAATCATCTCCTGA  680

seq1  TAGGATTGGGATTAGAAGGATGGCCCAGCTTTGTTCTGCCTCTGTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTGGGATTAGAAGGATGGCCCAGCTTTGTTCTGCCTCTGTCTTTA  730

seq1  GCCTTCGAGTTTATGCTATAATGAGGTAATGCAGGAAGAAGTAGTTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGAGTTTATGCTATAATGAGGTAATGCAGGAAGAAGTAGTTAAGG  780

seq1  CTGAGAAGGCAGAGAAACTGGGAATACCAGACACACTAAGTATATAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGCAGAGAAACTGGGAATACCAGACACACTAAGTATATAAAGT  830

seq1  GTTAGTGACTTAGTGACGAATAGATTCCACAGAGGACATACTAGTATTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGACTTAGTGACGAATAGATTCCACAGAGGACATACTAGTATTTG  880

seq1  TTTTTGTTTTTGTTTTTTTCTTTACTAGAATTGGTTTAGTGTGTGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTTTTTCTTTACTAGAATTGGTTTAGTGTGTGAGAAA  930

seq1  TTTACATTCCAGTCAGAAAACTCATTTTCTGGGTGAAAATGACCTCTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCCAGTCAGAAAACTCATTTTCTGGGTGAAAATGACCTCTATG  980

seq1  GCTTCAGTCAAACACCTTGCCTTTCAAGAAAAAAAGGTCAGCCCCTGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTCAAACACCTTGCCTTTCAAGAAAAAAAGGTCAGCCCCTGTGT  1030

seq1  AGAATTAAGGTAAAACCAGAGAAAATACAGAGAATAGATGAATGAAACTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAGGTAAAACCAGAGAAAATACAGAGAATAGATGAATGAAACTG  1080

seq1  AGCTGTATTTTGGGGTAATTGCTCGCAGCAGAGACAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTATTTTGGGGTAATTGCTCGCAGCAGAGACAGAATTC  1122

seq1: chr13_118277137_118278043
seq2: B6Ng01-024O03.g_70_975

seq1  GAATTCTTTTGAACAGGATTCATTTTTGTGTGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAACAGGATTCATTTTTGTGTGTGTGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGAATCTTGACTGTCAGTGAGTGTCCATTCCTGGACTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGAATCTTGACTGTCAGTGAGTGTCCATTCCTGGACTGTAGA  100

seq1  CATTTCACATATTTAGCACATTAATAAGATTCTTCATTTTGAGGACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACATATTTAGCACATTAATAAGATTCTTCATTTTGAGGACTTAC  150

seq1  CAGGTTCATTTAGACCCCAGAATTCCCAACCTGCACAATCCTATTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCATTTAGACCCCAGAATTCCCAACCTGCACAATCCTATTTCTCC  200

seq1  TTCCAGCATTAACTTAAGGCAATCTTAATGTGATAGTGTGTGTAGTAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCATTAACTTAAGGCAATCTTAATGTGATAGTGTGTGTAGTAGTG  250

seq1  TAGGACCAACTGAGACTATTAGGCCATTATAAATATGAAGTTGGGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCAACTGAGACTATTAGGCCATTATAAATATGAAGTTGGGGATTT  300

seq1  TATTACTACATACTGCTGAATATTGTTTTAACTTTATTTGTTGGTGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTACATACTGCTGAATATTGTTTTAACTTTATTTGTTGGTGTGAT  350

seq1  ACAAATTTAAATAGAATACTATTCCTTTTCTATCTTACATATTACATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAAATAGAATACTATTCCTTTTCTATCTTACATATTACATGGT  400

seq1  CCTACTGCCTAGCTAGGAAAAATGTTGTAGTATATTTAGCATTCGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGCCTAGCTAGGAAAAATGTTGTAGTATATTTAGCATTCGTTTTA  450

seq1  GTATATATTAATTCCTGGAAAATACGGCAACATAATAAGCTTTGCATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTAATTCCTGGAAAATACGGCAACATAATAAGCTTTGCATTGA  500

seq1  TTTCTATGGACCTCTCATTGTTTCAATAACCCATATTATTGCATCTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGGACCTCTCATTGTTTCAATAACCCATATTATTGCATCTGGTC  550

seq1  TGGATGATTCATATTTCTGGTTGTTACTTCTAAGCTTCTCCCATATC-TT  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGATGATTCATATTTCTGGTTGTTACTTCTAAGCTTCTCCCATATCTTT  600

seq1  ATGCAGCTCCATGGCATATGTGAAGCTCTGACTGTTTGTGTGC-AAGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGCAGCTCCATGGCATATGTGAAGCTCTGACTGTTTGTGTGCAAAGAAG  650

seq1  TTGACCTC-TTTCTGTTCATCCATCTCAGAAAGTACTTCATCCTCAGCAA  697
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCTTTTCTGTTCATCCATCTCAGAAAGTACTTCATCCTCAGCAA  700

seq1  CACATTTCTTTAGTGCCGTGGACTCATTTAATTTCTTTCTTTCTATGTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCTTTAGTGCCGTGGACTCATTTAATTTCTTTCTTTCTATGTAT  750

seq1  CATATCTTTGGATAAGTAAATAGTA-TTTTAAGGTACAATTAACCTTATT  796
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  CATATCTTT-GATAAGTAAATAGTATTTTTAAGGTACAATTAACCTTATT  799

seq1  TTAAGGTTAAACTAATTTTAAGTATATAATAGATTTTGCAGGTTCTAGCT  846
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TTAAGGTTAAACTAA-TTTAAGTATATAATAGATTTTGCA-GTTCTAGCT  847

seq1  ACCATATTTAATTTCTGTTTTTAAAATGAAGTTTCTTTAGGGCATGGGAA  896
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  ACCATATTTAATTTCTGTTTT--AAATGAAGTTTCTTTAGGGCATGGGAA  895

seq1  GGGGACTGTTA  907
      |||||||||||
seq2  GGGGACTGTTA  906