BAC Information

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BAC

Clone NameB6Ng01-025K15
Chromosome13 (Build37)
Map Location 55,542,383 - 55,709,756
singlet/doubletdoublet
Overlap geneGprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7
Upstream geneThoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12
Downstream geneCaml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025K15.bB6Ng01-025K15.g
ACCDH856942DH856943
length984961
definitionDH856942|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K15, 5' end.DH856943|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,708,765 - 55,709,756)(55,542,383 - 55,543,351)
sequence
gaattcatcatcctctcggccccagccccaaaagcggttggacattccgt
tgcactgacacaaagacaggcagtgtctgtcacatgctccctcctcccag
gggtgcactttggtctcctacttcttgggagaaccaagtctgagcacagc
cagcttcctgccctgactgttctgagtgaatacagggtgctgcaaggtcc
cttcacttctgtagtgcaaatgccgggaccaagggaaggctcagcacatc
ttagtcccgccctgcttctaacagggcggggaacaggtatatgattagtg
tctcaagtgtcaactctcttcagagggccaaaatgccagttgctactatt
tgattttctcttaattgcatttttcctggggtggctctgcccaggtctct
tcctgtgtttgagggacaatgggctctttaactcttaattggcatctgct
caggggcttcatttacaaaactggcttcagccatggaggacagagaaaag
ccattctgatcctctcacccacctgtgcccctgggtcccatcaagagcca
gtgtgttttagtttgggactcctgtctaaacttctggggagggaggagct
ccatcccccactccccaaccaggccccgctttacaggctgtagctacaca
gccttctcacaggaggggcaggcgctgaggcctgggaagagaaaggaaga
cttggtacccttgcagggagggggaggttctgcaggccttcccacctcta
ggtccctgtgaccagctgacactggggcttctgtggtcccagcagagctc
tccctggctaagtgctccctcctggttccctcacagtctctggctgctgc
tcaggctctggcactgctccatctgctgggccccaggaaggctgctctac
cctccaactgcctagacccacgatggggaagattcctgcaatgacagagc
atgtggggctgggctcacattggtatgctgtttg
gaattccttaatcaggcctgcaagctcacttgggtgtctctctattctgg
taatgggagaccccagcatggtggacttctgcagaatgaacactctgtat
ttacatactgtttgagtccaggctatcattctttggctaatcgtggaccc
ttagaggtttttattttaatattgataaccacatgtggctggtggctaca
atactgagaaatgtggttcggggtaagagaggccatgtgtatggctggct
gctagcttgcacggagcaaggggttgtagacagtggagggataaacaggg
cccagatgaagcagcacatttgaaggccatctggaagagactggagtctc
tttttattcactttgtttttttttattattattattttgggcgcaggaaa
tgaaactggaagccttgtcacttagcgacttagactttgcaatgacatgt
catgttggctgcattcttttggtctgaactcattcaggcaatgctgccac
attcaaggggtggggacgttagggtatgaatgcctttcaggtattaaggc
cagggacactttagaagttgttcagcatgggtttccacagaaggttctca
acgagagagagagtgactgggtcaggtctgttggttgttttggttttttg
agacagagtctctctatattaccctggctgtcctagatcttactttgtag
accagactggctttgaatccacatagatatgcctgccttgggcctcccaa
gtgcttggattaaaggtatgcaccacacacctggcacagctggtagtttt
taagaataagcaactggttgggtgacatggcaaagacttgtagtcttttc
tagtgaagccaatacaggattgcttacaacccagtttcagacaagctagg
ctgagtgacaaatatgaagagcttgttgaagcagaaggaaagaaatgggg
aagggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_55708765_55709756
seq2: B6Ng01-025K15.b_43_1026 (reverse)

seq1  CAAACAGCACTACCAGCTGGTGAGGCCCAGCCCCACATGCTCTGCTCATT  50
      ||||||||| |||||    |||| |||||||||||||||||||| ||| |
seq2  CAAACAGCA-TACCA--ATGTGA-GCCCAGCCCCACATGCTCTG-TCA-T  44

seq1  TGCTGGGGATCTTCCCCATCGTGGGTCTAGGCAGTTGGGAGGGTAGAGCA  100
      |||  || |||||||||||||||||||||||||||| |||||||||||||
seq2  TGC-AGGAATCTTCCCCATCGTGGGTCTAGGCAGTT-GGAGGGTAGAGCA  92

seq1  GCCTTCCTGGGGCCCAGCAGATGGAGCAGTGCCAGAGCCTGAGCAGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTGGGGCCCAGCAGATGGAGCAGTGCCAGAGCCTGAGCAGCAGC  142

seq1  CAGAGACTGTGAGGGAACCAGGAGGGAGCACTTAGCCAGGGAGAGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGTGAGGGAACCAGGAGGGAGCACTTAGCCAGGGAGAGCTCTG  192

seq1  CTGGGACCACAGAAGCCCCAGTGTCAGCTGGTCACAGGGACCTAGAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCACAGAAGCCCCAGTGTCAGCTGGTCACAGGGACCTAGAGGTG  242

seq1  GGAAGGCCTGCAGAACCTCCCCCTCCCTGCAAGGGTACCAAGTCTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCCTGCAGAACCTCCCCCTCCCTGCAAGGGTACCAAGTCTTCCTT  292

seq1  TCTCTTCCCAGGCCTCAGCGCCTGCCCCTCCTGTGAGAAGGCTGTGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCAGGCCTCAGCGCCTGCCCCTCCTGTGAGAAGGCTGTGTAGC  342

seq1  TACAGCCTGTAAAGCGGGGCCTGGTTGGGGAGTGGGGGATGGAGCTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTGTAAAGCGGGGCCTGGTTGGGGAGTGGGGGATGGAGCTCCTC  392

seq1  CCTCCCCAGAAGTTTAGACAGGAGTCCCAAACTAAAACACACTGGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAGAAGTTTAGACAGGAGTCCCAAACTAAAACACACTGGCTCTT  442

seq1  GATGGGACCCAGGGGCACAGGTGGGTGAGAGGATCAGAATGGCTTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACCCAGGGGCACAGGTGGGTGAGAGGATCAGAATGGCTTTTCTC  492

seq1  TGTCCTCCATGGCTGAAGCCAGTTTTGTAAATGAAGCCCCTGAGCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCATGGCTGAAGCCAGTTTTGTAAATGAAGCCCCTGAGCAGATG  542

seq1  CCAATTAAGAGTTAAAGAGCCCATTGTCCCTCAAACACAGGAAGAGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAGAGTTAAAGAGCCCATTGTCCCTCAAACACAGGAAGAGACCT  592

seq1  GGGCAGAGCCACCCCAGGAAAAATGCAATTAAGAGAAAATCAAATAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGCCACCCCAGGAAAAATGCAATTAAGAGAAAATCAAATAGTAG  642

seq1  CAACTGGCATTTTGGCCCTCTGAAGAGAGTTGACACTTGAGACACTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGCATTTTGGCCCTCTGAAGAGAGTTGACACTTGAGACACTAATC  692

seq1  ATATACCTGTTCCCCGCCCTGTTAGAAGCAGGGCGGGACTAAGATGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCTGTTCCCCGCCCTGTTAGAAGCAGGGCGGGACTAAGATGTGCT  742

seq1  GAGCCTTCCCTTGGTCCCGGCATTTGCACTACAGAAGTGAAGGGACCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTCCCTTGGTCCCGGCATTTGCACTACAGAAGTGAAGGGACCTTG  792

seq1  CAGCACCCTGTATTCACTCAGAACAGTCAGGGCAGGAAGCTGGCTGTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCTGTATTCACTCAGAACAGTCAGGGCAGGAAGCTGGCTGTGCT  842

seq1  CAGACTTGGTTCTCCCAAGAAGTAGGAGACCAAAGTGCACCCCTGGGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGGTTCTCCCAAGAAGTAGGAGACCAAAGTGCACCCCTGGGAGG  892

seq1  AGGGAGCATGTGACAGACACTGCCTGTCTTTGTGTCAGTGCAACGGAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCATGTGACAGACACTGCCTGTCTTTGTGTCAGTGCAACGGAATG  942

seq1  TCCAACCGCTTTTGGGGCTGGGGCCGAGAGGATGATGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCGCTTTTGGGGCTGGGGCCGAGAGGATGATGAATTC  984

seq1: chr13_55542383_55543351
seq2: B6Ng01-025K15.g_67_1027

seq1  GAATTCCTTAATCAGGCCTGCAAGCTCACTTGGGTGTCTCTCTATTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATCAGGCCTGCAAGCTCACTTGGGTGTCTCTCTATTCTGG  50

seq1  TAATGGGAGACCCCAGCATGGTGGACTTCTGCAGAATGAACACTCTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGAGACCCCAGCATGGTGGACTTCTGCAGAATGAACACTCTGTAT  100

seq1  TTACATACTGTTTGAGTCCAGGCTATCATTCTTTGGCTAATCGTGGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACTGTTTGAGTCCAGGCTATCATTCTTTGGCTAATCGTGGACCC  150

seq1  TTAGAGGTTTTTATTTTAATATTGATAACCACATGTGGCTGGTGGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTTTTTATTTTAATATTGATAACCACATGTGGCTGGTGGCTACA  200

seq1  ATACTGAGAAATGTGGTTCGGGGTAAGAGAGGCCATGTGTATGGCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGAAATGTGGTTCGGGGTAAGAGAGGCCATGTGTATGGCTGGCT  250

seq1  GCTAGCTTGCACGGAGCAAGGGGTTGTAGACAGTGGAGGGATAAACAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTGCACGGAGCAAGGGGTTGTAGACAGTGGAGGGATAAACAGGG  300

seq1  CCCAGATGAAGCAGCACATTTGAAGGCCATCTGGAAGAGACTGGAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGAAGCAGCACATTTGAAGGCCATCTGGAAGAGACTGGAGTCTC  350

seq1  TTTTTATTCACTTTGTTTTTTTTTATTATTATTATTTTGGGCGCAGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCACTTTGTTTTTTTTTATTATTATTATTTTGGGCGCAGGAAA  400

seq1  TGAAACTGGAAGCCTTGTCACTTAGCGACTTAGACTTTGCAATGACATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGGAAGCCTTGTCACTTAGCGACTTAGACTTTGCAATGACATGT  450

seq1  CATGTTGGCTGCATTCTTTTGGTCTGAACTCATTCAGGCAATGCTGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGGCTGCATTCTTTTGGTCTGAACTCATTCAGGCAATGCTGCCAC  500

seq1  ATTCAAGGGGTGGGGACGTTAGGGTATGAATGCCTTTCAGGTATTAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGGGTGGGGACGTTAGGGTATGAATGCCTTTCAGGTATTAAGGC  550

seq1  CAGGGACACTTTAGAAGTTGTTCAGCATGGGTTTCCACAGAAGGTTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACACTTTAGAAGTTGTTCAGCATGGGTTTCCACAGAAGGTTCTCA  600

seq1  ACGAGAGAGAGAGTGACTGGGTCAGGTCTGTTGGTTGTTTTGGTTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGAGAGAGTGACTGGGTCAGGTCTGTTGGTTGTTTTGGTTTTTTG  650

seq1  AGACAGAGTCTCTCTATATTACCCTGGCTGTCCTAGATCTTACTTTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTCTCTCTATATTACCCTGGCTGTCCTAGATCTTACTTTGTAG  700

seq1  ACCAGACTGGCTTTGAATCCACATAGATATGCCTGCCTT-GGCCTCCCAA  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCAGACTGGCTTTGAATCCACATAGATATGCCTGCCTTGGGCCTCCCAA  750

seq1  GTGCTTGGATTAAAGGTATGCACCACACACCTGGCACAGCTGGTAGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGATTAAAGGTATGCACCACACACCTGGCACAGCTGGTAGTTTT  800

seq1  TAAGAATAAGCAACCTGGTTGGGTGACATGGCAAAGACTTGTAGTCTTTA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  TAAGAATAAGCAA-CTGGTTGGGTGACATGGCAAAGACTTGTAGTCTTTT  849

seq1  CTAGGGAAGCCAAAACAGGATTGCTTACAACCCAAGTTCAAGACCAGCTA  899
      |||| |||||||| ||||||||||||||||||| ||||  |||| |||||
seq2  CTAGTGAAGCCAATACAGGATTGCTTACAACCC-AGTTTCAGACAAGCTA  898

seq1  GGCTGAGTGACAAATATGAAGAGCTTGTTGAAAGCAAGAGAGGAAGGAAA  949
      |||||||||||||||||||||||||||||| |||| ||| ||||| ||||
seq2  GGCTGAGTGACAAATATGAAGAGCTTGTTG-AAGC-AGA-AGGAAAGAAA  945

seq1  AGGGGGAGGGAAGGAGGAGG  969
       |||| |||| ||||||   
seq2  TGGGGAAGGG-AGGAGG---  961