BAC Information

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BAC

Clone NameB6Ng01-026K16
Chromosome13 (Build37)
Map Location 6,057,476 - 6,058,590
singlet/doubletsinglet
Overlap genenone
Upstream gene1700016G22Rik, Klf6
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026K16.bB6Ng01-026K16.g
ACCDH857641DH857642
length1,1571,105
definitionDH857641|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K16, 5' end.DH857642|Mus musculus domesticus DNA, BAC clone: B6Ng01-026K16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacccgaggaatactgaatggctgagaagcacctgaagaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccaggcagaaaggcttagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagagggacactcctccattgttggtg
ggattccaagcttgtacaaccactctggatatcagtctggccgttcctca
gaaaattggacatagcactaccggaggatcctgcaatacctctcctgggc
atatatccagaagatgtccaacgggtaagaaggacacatgctccactatg
ttcatagcagccttatttataaaagtcagaagctggaaagaacccagatg
ctcctcaacagaggaatggatacaaaaaatgtggtatatttatacaatgg
agtactactcagctattaaaaagaatgaatttttgaaaatcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtggatattagcccagaaact
tagtatagcgggatgtaaggtacaatttgcaaaacacatgaaactgaaga
agaacgaagaccaaagtgtggacactttgccccttcttagaattggaaac
aatcacccatggaaggagttacagagacaaagtttggagctgagagaaaa
ggatggaccatctagagactgccatatccagggaaccatcccataattag
cctcaaaaccttgacaccattgcatacactagcaagcgtttgttgcaagg
accatgatatacctgtctcttgtgagactaggccggggcctagcgaacac
agaagtggatgctcacagtcgactattagatggatcacagggcccctcaa
tggaggagctagagaaagtatccaagagctaagagatctacaaccttgta
ggtgcacatatgactatcagtaccccggagctcttgttcctagctgcata
tgatcaaagatggctagtcgtctcctggaaaggaaggccattggacagcc
aacttattttgcccagttcagggaacgcccagggcaaaatgattgttgtt
atgtgat
gaattccacagctgcactaacatgcatgtcctagacgtaaacaaatagag
agagaattaattttaaatttccttaaaatttccggtgcctggtgaattct
aaataaatccaaaccatcccatattagaaaggaagttttttgtgttattt
tttgttggtatgagttacattgttttctttgttataattcactcaaaatg
tgattaaaaaatgagtaggcggtagctattacaactaacaatataacctg
gcatcggatttgataagagagagaaagagagatgggacctactatgtaat
ttcatttacagtaagtggtccaaaacatcctcactcacaaaaacacatag
agcataaaatggttaagtaccagaaacccaggaggctacagccccctccc
cacaggggacacataataatgtaacatacaaataactcttgtccagcagg
gaaacatttcccagcaacactccacctggaaagatgtcctcttccctccc
aaaggctacattaaaaatcctttccttgaaattctcaactaactacagtg
agaatagaaggcattttgaggctcacataccttttctacactcaaacatt
ttattggataattgggggaagaagtttaacatactggaagaacactcatg
tatttatttgtaggttaattgtccacaagatcctaggcagaaagatgggt
caatagagcctacaaggccaggaaataaaagaacagtatgatggcaaagt
ctcagtaaaactttcaacatggtcatgactccatacttctatgacaactg
gagctttgaggattgcctggtcaatctttataaaaactagctacacacta
tggaggaaaaggtgttttcaactctacctagccggagacattgccaaccc
ccacttatcactatgatttatcaaaactacccaatcagacacaagaatcc
cttaggatcttttgtgtgctctaatagaaaagctgagtgtggaatacata
ttaagattgtagatgtattccttatgttttagagcttgaagatttaaata
atgcatggatttctttcgtgggtggcgggaagacttctctctcggatgaa
ggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6057476_6058590
seq2: B6Ng01-026K16.g_69_1173 (reverse)

seq1  ACCCCTTCACCAGAGAAGAAAGTCTTCCCGCCACCAACAGAATGAAATAC  50
      ||||||||| | ||||   |||||||||||||||| || ||| ||||| |
seq2  ACCCCTTCATCCGAGAGAGAAGTCTTCCCGCCACCCAC-GAAAGAAAT-C  48

seq1  CATTGCATGATCTCAAATCTCCAAGCTCTAAAACCATAAGAGATACATCT  100
      || ||||| || | |||||| |||||||||||| ||||||  ||||||||
seq2  CA-TGCATTAT-TTAAATCTTCAAGCTCTAAAA-CATAAGGAATACATCT  95

seq1  ACATTCTATATATGTTATTCACACTCAGCTCTTCTATTAGAGCACCACAA  150
      ||| |||  ||||||  | ||||||||||| ||||||||||||| |||||
seq2  ACAATCTTAATATGTATTCCACACTCAGCTTTTCTATTAGAGCA-CACAA  144

seq1  AAGGATCCTAAGGGATTCTTGTTGTCTGATTGGGTAGTTTTGATTAAATC  200
      || |||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  AA-GATCCTAAGGGATTCTTG-TGTCTGATTGGGTAGTTTTGA-TAAATC  191

seq1  ATAGGTGATAAGTGGGGGTTGGCAATGTCTCCGGCTAGGTAGAGTTGAAA  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATA-GTGATAAGTGGGGGTTGGCAATGTCTCCGGCTAGGTAGAGTTGAAA  240

seq1  ACACCTTTTCCTCCATAGTGTGTAGCTAGTTTTTATAAAGATTGACCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTTCCTCCATAGTGTGTAGCTAGTTTTTATAAAGATTGACCAGG  290

seq1  CAATCCTCAAAGCTCCAGTTGTCATAGAAGTATGGAGTCATGACCATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCAAAGCTCCAGTTGTCATAGAAGTATGGAGTCATGACCATGTT  340

seq1  GAAAGTTTTACTGAGACTTTGCCATCATACTGTTCTTTTATTTCCTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTTACTGAGACTTTGCCATCATACTGTTCTTTTATTTCCTGGCC  390

seq1  TTGTAGGCTCTATTGACCCATCTTTCTGCCTAGGATCTTGTGGACAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCTCTATTGACCCATCTTTCTGCCTAGGATCTTGTGGACAATTA  440

seq1  ACCTACAAATAAATACATGAGTGTTCTTCCAGTATGTTAAACTTCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAAATAAATACATGAGTGTTCTTCCAGTATGTTAAACTTCTTCCC  490

seq1  CCAATTATCCAATAAAATGTTTGAGTGTAGAAAAGGTATGTGAGCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATCCAATAAAATGTTTGAGTGTAGAAAAGGTATGTGAGCCTCAA  540

seq1  AATGCCTTCTATTCTCACTGTAGTTAGTTGAGAATTTCAAGGAAAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTCTATTCTCACTGTAGTTAGTTGAGAATTTCAAGGAAAGGATT  590

seq1  TTTAATGTAGCCTTTGGGAGGGAAGAGGACATCTTTCCAGGTGGAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAGCCTTTGGGAGGGAAGAGGACATCTTTCCAGGTGGAGTGTT  640

seq1  GCTGGGAAATGTTTCCCTGCTGGACAAGAGTTATTTGTATGTTACATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAATGTTTCCCTGCTGGACAAGAGTTATTTGTATGTTACATTAT  690

seq1  TATGTGTCCCCTGTGGGGAGGGGGCTGTAGCCTCCTGGGTTTCTGGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCCCCTGTGGGGAGGGGGCTGTAGCCTCCTGGGTTTCTGGTACT  740

seq1  TAACCATTTTATGCTCTATGTGTTTTTGTGAGTGAGGATGTTTTGGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATTTTATGCTCTATGTGTTTTTGTGAGTGAGGATGTTTTGGACCA  790

seq1  CTTACTGTAAATGAAATTACATAGTAGGTCCCATCTCTCTTTCTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTAAATGAAATTACATAGTAGGTCCCATCTCTCTTTCTCTCTCT  840

seq1  TATCAAATCCGATGCCAGGTTATATTGTTAGTTGTAATAGCTACCGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATCCGATGCCAGGTTATATTGTTAGTTGTAATAGCTACCGCCTA  890

seq1  CTCATTTTTTAATCACATTTTGAGTGAATTATAACAAAGAAAACAATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTAATCACATTTTGAGTGAATTATAACAAAGAAAACAATGTA  940

seq1  ACTCATACCAACAAAAAATAACACAAAAAACTTCCTTTCTAATATGGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACCAACAAAAAATAACACAAAAAACTTCCTTTCTAATATGGGAT  990

seq1  GGTTTGGATTTATTTAGAATTCACCAGGCACCGGAAATTTTAAGGAAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGATTTATTTAGAATTCACCAGGCACCGGAAATTTTAAGGAAATT  1040

seq1  TAAAATTAATTCTCTCTCTATTTGTTTACGTCTAGGACATGCATGTTAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAATTCTCTCTCTATTTGTTTACGTCTAGGACATGCATGTTAGT  1090

seq1  GCAGCTGTGGAATTC  1115
      |||||||||||||||
seq2  GCAGCTGTGGAATTC  1105