BAC Information

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BAC

Clone NameB6Ng01-027H22
Chromosome13 (Build37)
Map Location 63,768,356 - 63,897,938
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
Downstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027H22.bB6Ng01-027H22.g
ACCDH858222DH858223
length886462
definitionDH858222|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H22, 5' end.DH858223|Mus musculus domesticus DNA, BAC clone: B6Ng01-027H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,897,050 - 63,897,938)(63,768,356 - 63,768,823)
sequence
gaattcatacaaaacatacccaagaggtaaaccaatccaatgacatgatg
acaaaataatcaaatcattggaatgtgaatcatacaaaataaagccgtga
tttacgaattcagtatcataaacaaaatatatgtgagagagcattgtgtg
cttcagtactggagagagcattgttctaaattaaaagagactgagacaaa
aagataaaagccagtatctaaaacttgactttttaaggaatatcacactg
tttactttataaagtgcattacagacactggaggaaagttgactgtggct
ggggagtagataacattacaaaactattagtaattacacagcagaacacc
caatttttagaagctgctcctgaaatttagggtagagtgtcagaaagtct
gcaattcattttcacatagcaccactaagcatacatgttcacacacaggc
acacatgaaaaaatatttattttttagtatataatgtttgaatttagatg
gtagagatgtgatgatgtgagcctttggttgtggtttgttgttttgtctt
tccattttttgacatagtaaaaatgtttacagtaaaaaataaaataaaaa
atatttacagtcaaaatctggggaaaatataaaatcatttcttataagat
agttccagaatgtctagaaaagctctgaagaaattctctttatgaaagat
acagagctaagctcagatctccagctaaggtgaatagccaatgaccagga
ggtgagagggttagaggaataaaatgcccttcctgagtcggatactagga
tgaagcccgccttctgtacaattaatacagaataaaaaaaatgagacagc
accctgtacagcaagttagtcacttctaaatagaag
agagaaagaagataggaaagagggaaagaccgtgtggtcatagaatttaa
aggctccatgaatcaaacttgggcaaatgctcaaggccagaataagtact
aactccatttggggccttgctgcttgaagtatggaagtgtgtgaaacatg
tgaagttgttaggccctcgcaggcccactggagcaaaacccaggaagatc
tccaagatttataaataaagggcaggagcctgtctgtgggaactcagaga
gagtggagtctagttggtgttgttaaacatctgatctggcatgcaattcc
tgtcttcaaggtttgtctgaatgggagttttcaaggttgcctgtgctgga
aagacgctttatcaatgcagtgcttaaagatgctttttaacactgagatt
ctgtttcagctctgacagggaaaggagaaggagggagggagaaagggaga
atgggaaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63897050_63897938
seq2: B6Ng01-027H22.b_44_929 (reverse)

seq1  CTTCTATTTAGAAGTGACTAACTTGCTTGTACAGGGTGCTGTCTCATTTT  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTCTATTTAGAAGTGACTAACTTGC-TGTACAGGGTGCTGTCTCATTTT  49

seq1  TTTTATTCTGTATTAATTGTACAGAATGGCGGGCTTCATCCTAGTATCCG  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTATTCTGTATTAATTGTACAGAA-GGCGGGCTTCATCCTAGTATCCG  98

seq1  ACTCATGGAGGGCATTTTATTCCTCTTAACCCTCTCACCTCCTGGTCATT  150
      ||||| | ||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTCAGGAAGGGCATTTTATTCCTC-TAACCCTCTCACCTCCTGGTCATT  147

seq1  GGCTATTCACCTTAGCTGGAGATCTGAGCTTAGCTCTGTATCTTTCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCACCTTAGCTGGAGATCTGAGCTTAGCTCTGTATCTTTCATAA  197

seq1  AGAGAATTTCTTCAGAGCTTTTCTAGACATTCTGGAACTATCTTATAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTTCTTCAGAGCTTTTCTAGACATTCTGGAACTATCTTATAAGA  247

seq1  AATGATTTTATATTTTCCCCAGATTTTGACTGTAAATATTTTTTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTATATTTTCCCCAGATTTTGACTGTAAATATTTTTTATTTTA  297

seq1  TTTTTTACTGTAAACATTTTTACTATGTCAAAAAATGGAAAGACAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTGTAAACATTTTTACTATGTCAAAAAATGGAAAGACAAAACA  347

seq1  ACAAACCACAACCAAAGGCTCACATCATCACATCTCTACCATCTAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCACAACCAAAGGCTCACATCATCACATCTCTACCATCTAAATTC  397

seq1  AAACATTATATACTAAAAAATAAATATTTTTTCATGTGTGCCTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTATATACTAAAAAATAAATATTTTTTCATGTGTGCCTGTGTGTG  447

seq1  AACATGTATGCTTAGTGGTGCTATGTGAAAATGAATTGCAGACTTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATGCTTAGTGGTGCTATGTGAAAATGAATTGCAGACTTTCTGA  497

seq1  CACTCTACCCTAAATTTCAGGAGCAGCTTCTAAAAATTGGGTGTTCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACCCTAAATTTCAGGAGCAGCTTCTAAAAATTGGGTGTTCTGCT  547

seq1  GTGTAATTACTAATAGTTTTGTAATGTTATCTACTCCCCAGCCACAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTACTAATAGTTTTGTAATGTTATCTACTCCCCAGCCACAGTCA  597

seq1  ACTTTCCTCCAGTGTCTGTAATGCACTTTATAAAGTAAACAGTGTGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTCCAGTGTCTGTAATGCACTTTATAAAGTAAACAGTGTGATAT  647

seq1  TCCTTAAAAAGTCAAGTTTTAGATACTGGCTTTTATCTTTTTGTCTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAAAGTCAAGTTTTAGATACTGGCTTTTATCTTTTTGTCTCAGT  697

seq1  CTCTTTTAATTTAGAACAATGCTCTCTCCAGTACTGAAGCACACAATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAATTTAGAACAATGCTCTCTCCAGTACTGAAGCACACAATGCT  747

seq1  CTCTCACATATATTTTGTTTATGATACTGAATTCGTAAATCACGGCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACATATATTTTGTTTATGATACTGAATTCGTAAATCACGGCTTTA  797

seq1  TTTTGTATGATTCACATTCCAATGATTTGATTATTTTGTCATCATGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGATTCACATTCCAATGATTTGATTATTTTGTCATCATGTCAT  847

seq1  TGGATTGGTTTACCTCTTGGGTATGTTTTGTATGAATTC  889
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGGTTTACCTCTTGGGTATGTTTTGTATGAATTC  886

seq1: chr13_63768356_63768823
seq2: B6Ng01-027H22.g_69_536

seq1  GAATTCAGAGAAAGAAGATAGGAAAGAGGGAAAGACCGTGTGGTCATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAAGAAGATAGGAAAGAGGGAAAGACCGTGTGGTCATAGA  50

seq1  ATTTAAAGGCTCCATGAATCAAACTTGGGCAAATGCTCAAGGCCAGAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGGCTCCATGAATCAAACTTGGGCAAATGCTCAAGGCCAGAATA  100

seq1  AGTACTAACTCCATTTGGGGCCTTGCTGCTTGAAGTATGGAAGTGTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAACTCCATTTGGGGCCTTGCTGCTTGAAGTATGGAAGTGTGTGA  150

seq1  AACATGTGAAGTTGTTAGGCCCTCGCAGGCCCACTGGAGCAAAACCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGAAGTTGTTAGGCCCTCGCAGGCCCACTGGAGCAAAACCCAGG  200

seq1  AAGATCTCCAAGATTTATAAATAAAGGGCAGGAGCCTGTCTGTGGGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCCAAGATTTATAAATAAAGGGCAGGAGCCTGTCTGTGGGAACT  250

seq1  CAGAGAGAGTGGAGTCTAGTTGGTGTTGTTAAACATCTGATCTGGCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGTGGAGTCTAGTTGGTGTTGTTAAACATCTGATCTGGCATGC  300

seq1  AATTCCTGTCTTCAAGGTTTGTCTGAATGGGAGTTTTCAAGGTTGCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGTCTTCAAGGTTTGTCTGAATGGGAGTTTTCAAGGTTGCCTGT  350

seq1  GCTGGAAAGACGCTTTATCAATGCAGTGCTTAAAGATGCTTTTTAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAAGACGCTTTATCAATGCAGTGCTTAAAGATGCTTTTTAACACT  400

seq1  GAGATTCTGTTTCAGCTCTGACAGGGAAAGGAGAAGGAGGGAGGGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTGTTTCAGCTCTGACAGGGAAAGGAGAAGGAGGGAGGGAGAAA  450

seq1  GGGAGAATGGGAAGGCAG  468
      ||||||||||||||||||
seq2  GGGAGAATGGGAAGGCAG  468