BAC Information

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BAC

Clone NameB6Ng01-027I19
Chromosome13 (Build37)
Map Location 64,531,198 - 64,582,572
singlet/doubletdoublet
Overlap geneCcrk, LOC665612, 1190003K10Rik
Upstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl
Downstream geneLOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I19.bB6Ng01-027I19.g
ACCDH858263DH858264
length1,030696
definitionDH858263|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I19, 5' end.DH858264|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,581,533 - 64,582,572)(64,531,198 - 64,531,891)
sequence
gaattcatttcctcttcctataaacttgggcttttttatttaggcacatg
caatgaaagtataaccgtgctaaatagtctcgtttgtctcacccttgtcc
ttgctcacctcaaaattgtctattgtctgccaagatgacatgtgtcttag
tcagttcttttctggtacagcaagtgtcggccccagaatcctcagacaca
ttctggaactttgagccatcctcacttagcttcctgcctggccctgaaca
agcttatggcatttactactgtaaatagcaagcaagtagcaagcatgggg
gttgctttgcctcgtgttccttgaggcaaggcaggagcaaagggagatag
aatgtagaactccaggcaaccaaggcacataggtggccagaggaaataaa
aggccaagttcaagacactctgaggcagtcctgggcaagacatgttgtct
aggctgattccttctgcgtctcctggaaaactaacagccctcgttatggc
cacgagagctgtgtgtggcaggaagagctggagagacttctaccatcatc
cacagtgggattaaaaaggctgtgcccaggcctctctcgtgggcacttat
tcaacttacattcaacataaagactgtaaactcgttcttggaaaagctga
gcgaatttcaaaagaggatgatcactagaaaggactttggtgaggacgga
gaaccatgggactaaacatcaagatacctgaccacaaatgagtcagagaa
gtcgtctgaaaatgtaacacttaaagggagacctaacctgtaaagatcat
ttcactatatatgtccacacctatacatcatatttcaaaccctaagcaca
cacagcccagtgctatgagcaaggaaaacagaacagggaagtgtggagtg
aggaaaagcaattggttgcatatgaagctatagggaaatgtgtgtttgta
acaaacaaggagggcttcttctataaaaaaatagggcatggggcttaaaa
aaagtcttaaacaacagatatcctcatgtt
gaattctctcagctactgagacattgaactctgtagtacaggctggtttt
gaactcatgatctttctgcctttcagcatcccaaagtgctgaaatcacag
gctgcactacctggaagggggctgatgatgctttctgtttttaagtataa
gaagtttttctttccctttaaaaactcttttagaactttatacatattca
gctcacgatactgacatccgttgacagtgaaagggaagttattgcctcag
gaccccaaattcttaacacgaagatttatttaccccagagggcaggggat
aagagacaaagacaggagatagaggacgaaggagaagagggggagaggag
gcaagtatatttgtcccaggatgacaaaggactgcttttggatagagaaa
agacagacatggcccataggcaaatggtggtttataaaggtaaagggaaa
aacccatattaggatggggtgtttaattttaattggacatgttaattagg
tgagccaaagggggcttttaattcccgacttttaatactttgatagctgg
acactggtagcagcctcaggaggaagaattggcctagaaggaaccagacc
ttggtggcttgctttaggaatgtaatttaacttttttttttttttttagc
aaggcagatggaattgagaagaagggcaatgtaagtgggccaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64581533_64582572
seq2: B6Ng01-027I19.b_46_1075 (reverse)

seq1  AACATGAGGATAACTCTGTGTTTTTAAGCCTCTCTCTATAGCCCCTGTCC  50
      ||||||||||||  ||||| | |||||| || | | || ||||||   ||
seq2  AACATGAGGATA--TCTGT-TGTTTAAGACTTTTTTTA-AGCCCCATGCC  46

seq1  CTACTTCTTCTATAGAGGAAGCCCCTCCTCGTTCTGTTACAGACACACAT  100
      ||| || || |||||| |||| ||||||| ||| ||||||| ||||||||
seq2  CTA-TTTTTTTATAGAAGAAG-CCCTCCTTGTT-TGTTACAAACACACAT  93

seq1  TTCCCTATAGCTTCCTATGCACCCATCTGCTTTTCCTCACTTCCACACCT  150
      |||||||||||||| |||||| |||  ||||||||||||| |||||| ||
seq2  TTCCCTATAGCTTCATATGCAACCAATTGCTTTTCCTCAC-TCCACA-CT  141

seq1  TCCCTGTTCTGTTTTCCTTGCTCATAGCACTGGGCTGTGTGTGCTTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTCTGTTTTCCTTGCTCATAGCACTGGGCTGTGTGTGCTTAGGG  191

seq1  TTTGAAATATGATGTATAGGTGTGGACATATATAGTGAAATGATCTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATGATGTATAGGTGTGGACATATATAGTGAAATGATCTTTAC  241

seq1  AGGTTAGGTCTCCCTTTAAGTGTTACATTTTCAGACGACTTCTCCTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGTTAGGTCTCCCTTTAAGTGTTACATTTTCAGACGACTTCT-CTGACT  290

seq1  CATTTGTGGTCAGGTATCTTGATGTTTAGTCCCATGGTTCTCCGTCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGGTCAGGTATCTTGATGTTTAGTCCCATGGTTCTCCGTCCTCA  340

seq1  CCAAAGTCCTTTCTAGTGATCATCCTCTTTTGAAATTCGCTCAGCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCCTTTCTAGTGATCATCCTCTTTTGAAATTCGCTCAGCTTTTC  390

seq1  CAAGAACGAGTTTACAGTCTTTATGTTGAATGTAAGTTGAATAAGTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACGAGTTTACAGTCTTTATGTTGAATGTAAGTTGAATAAGTGCCC  440

seq1  ACGAGAGAGGCCTGGGCACAGCCTTTTTAATCCCACTGTGGATGATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGAGGCCTGGGCACAGCCTTTTTAATCCCACTGTGGATGATGGTA  490

seq1  GAAGTCTCTCCAGCTCTTCCTGCCACACACAGCTCTCGTGGCCATAACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCTCCAGCTCTTCCTGCCACACACAGCTCTCGTGGCCATAACGA  540

seq1  GGGCTGTTAGTTTTCCAGGAGACGCAGAAGGAATCAGCCTAGACAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTAGTTTTCCAGGAGACGCAGAAGGAATCAGCCTAGACAACATG  590

seq1  TCTTGCCCAGGACTGCCTCAGAGTGTCTTGAACTTGGCCTTTTATTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCCAGGACTGCCTCAGAGTGTCTTGAACTTGGCCTTTTATTTCCT  640

seq1  CTGGCCACCTATGTGCCTTGGTTGCCTGGAGTTCTACATTCTATCTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACCTATGTGCCTTGGTTGCCTGGAGTTCTACATTCTATCTCCCT  690

seq1  TTGCTCCTGCCTTGCCTCAAGGAACACGAGGCAAAGCAACCCCCATGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTGCCTTGCCTCAAGGAACACGAGGCAAAGCAACCCCCATGCTT  740

seq1  GCTACTTGCTTGCTATTTACAGTAGTAAATGCCATAAGCTTGTTCAGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGCTTGCTATTTACAGTAGTAAATGCCATAAGCTTGTTCAGGGC  790

seq1  CAGGCAGGAAGCTAAGTGAGGATGGCTCAAAGTTCCAGAATGTGTCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGAAGCTAAGTGAGGATGGCTCAAAGTTCCAGAATGTGTCTGAG  840

seq1  GATTCTGGGGCCGACACTTGCTGTACCAGAAAAGAACTGACTAAGACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGGGCCGACACTTGCTGTACCAGAAAAGAACTGACTAAGACACA  890

seq1  TGTCATCTTGGCAGACAATAGACAATTTTGAGGTGAGCAAGGACAAGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTTGGCAGACAATAGACAATTTTGAGGTGAGCAAGGACAAGGGT  940

seq1  GAGACAAACGAGACTATTTAGCACGGTTATACTTTCATTGCATGTGCCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAACGAGACTATTTAGCACGGTTATACTTTCATTGCATGTGCCTA  990

seq1  AATAAAAAAGCCCAAGTTTATAGGAAGAGGAAATGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAGCCCAAGTTTATAGGAAGAGGAAATGAATTC  1030

seq1: chr13_64531198_64531891
seq2: B6Ng01-027I19.g_67_762

seq1  GAATTCTCTCAGCTACTGAGACATTGAACTCTGTAGTACAGGCTGGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGCTACTGAGACATTGAACTCTGTAGTACAGGCTGGTTTT  50

seq1  GAACTCATGATCTTTCTGCCTTTCAGCATCCCAAAGTGCTGAAATCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATGATCTTTCTGCCTTTCAGCATCCCAAAGTGCTGAAATCACAG  100

seq1  GCTGCACTACCTGGAAGGGGGCTGATGATGCTTTCTGTTTTTAAGTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTACCTGGAAGGGGGCTGATGATGCTTTCTGTTTTTAAGTATAA  150

seq1  GAAGTTTTTCTTTCCCTTTAAAAACTCTTTTAGAACTTTATACATATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTTCTTTCCCTTTAAAAACTCTTTTAGAACTTTATACATATTCA  200

seq1  GCTCACGATACTGACATCCGTTGACAGTGAAAGGGAAGTTATTGCCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGATACTGACATCCGTTGACAGTGAAAGGGAAGTTATTGCCTCAG  250

seq1  GACCCCAAATTCTTAACACGAAGATTTATTTACCCCAGAGGGCAGGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAATTCTTAACACGAAGATTTATTTACCCCAGAGGGCAGGGGAT  300

seq1  AAGAGACAAAGACAGGAGATAGAGGACGAAGGAGAAGAGGGGGAGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAAAGACAGGAGATAGAGGACGAAGGAGAAGAGGGGGAGAGGAG  350

seq1  GCAAGTATATTTGTCCCAGGATGACAAAGGACTGCTTTTGGATAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATATTTGTCCCAGGATGACAAAGGACTGCTTTTGGATAGAGAAA  400

seq1  AGACAGACATGGCCCATAGGCAAATGGTGGTTTATAAAGGTAAAGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACATGGCCCATAGGCAAATGGTGGTTTATAAAGGTAAAGGGAAA  450

seq1  AACCCATATTAGGATGGGGTGTTTAATTTTAATTGGACATGTTAATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATATTAGGATGGGGTGTTTAATTTTAATTGGACATGTTAATTAGG  500

seq1  TGAGCCAAAGGGGGCTTTTAATTCCCGAC-TTTAATACTTTGATAGCTGG  549
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAGCCAAAGGGGGCTTTTAATTCCCGACTTTTAATACTTTGATAGCTGG  550

seq1  ACACTGGTAGCAGCCTCAGGAGGAAGAATTGGCCAAGAAGGAACCAGACC  599
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACACTGGTAGCAGCCTCAGGAGGAAGAATTGGCCTAGAAGGAACCAGACC  600

seq1  TTGGTGGCTTGCTTTAGGAATGTAATTTAAC-TTTTTTTTTTTTTTTAGC  648
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTGGTGGCTTGCTTTAGGAATGTAATTTAACTTTTTTTTTTTTTTTTAGC  650

seq1  AAGGCAGAGGGAATTGAGAAGAAGGGCAAGGCAAGTGGGCCAATGT  694
      |||||||| |||||||||||||||||||| | ||||||||||||||
seq2  AAGGCAGATGGAATTGAGAAGAAGGGCAATGTAAGTGGGCCAATGT  696