BAC Information

Click to search

BAC

Clone NameB6Ng01-028E23
Chromosome13 (Build37)
Map Location 64,899,944 - 64,900,994
singlet/doubletsinglet
Overlap geneCntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028E23.bB6Ng01-028E23.g
ACCDH858820DH858821
length1,1991,042
definitionDH858820|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E23, 5' end.DH858821|Mus musculus domesticus DNA, BAC clone: B6Ng01-028E23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgccaatccatgagcatgggagatctttcccttct
tctgagatcttctttaatttctttcttcagagacttgaagtttttatcat
acagatcttttcacttccttagttagagtcacgccgagatattttatatt
atttgtgactatttgagaagggtgttgttttccctaatttctttctcagc
ctggttattctttgtgtagagaaaggcattgaatttgtttgggttaattt
atatttccgctctttaccgaacttgttatcaggtttagaagtctccgggg
gaaatttagggtgccttaataataccatgctatcactgcggaaacggtat
atggactcctcctttccaatggtatcccctggaatccttctgtatggcc
gaattccaagccatggttggctcaaggactacctagggcattggtaaagg
ccaggaagaaaagttcaattttgcttaggtatttggcaggtcattgcttg
gaggtacctataacaaaacaatactgaaaggaagcacacagatccatttg
caaggacaaaattggtgcatacgtgctatgggatgccacagtaccaggag
actaagtttccgtgaaactgttcacctcgggactgtgtccaggttcctaa
atctgtcaagcaagtcattactggagtggatgtagcaaatagtagataat
tgagaaagcaaaacaaaattgctatatctatgttaaacattagcaaaact
atttgaaagaagacagccttttggatataggcagagtgaacacatgccac
cattgatataagctatgataatacaaaaatgatcttgaagatacgttgac
ccttcctctttgttttttacagggatttccaggaaacacaaatgcagaca
gtgtggtacaatatagtctccagccttccttccacaccaggttcctgcgc
ttcctccccttaacctggaaccctaaaggcaggattgggatgcggataga
agtatatgggtgttcatacagtaagtgatatttattttccatgtaaaata
aacatctgcatgagatgctgcaaaaagccagcgtcagttaaaaattactt
gctctagacatttttagtaattgtataattaaaaccgagtgttatgagac
ttctactaactccttatgacaatataggctttaattatttttttcatagt
taaatttagagattgcttagtgagaaaatgtttgataggaaataagggtg
aattttggagccctagtatcacataaaagggcaggtgtacagtgaatgtc
tacgatccagtgctggagacagagaacagagacaggtaatctctggagca
cactgatcagccagtctagccacaaatgaataccagtcagtgaagagagt
ctatctcagtaataaggtgacgacgataaaggaagaacctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64899944_64900994
seq2: B6Ng01-028E23.g_66_1107 (reverse)

seq1  CCAGGTGTCTTCCTTTATCGTCTGTCACCTTATTTACTGAGATAGACTCT  50
      |||||| ||||||||||||||| ||||||||| |||||||||||||||||
seq2  CCAGGT-TCTTCCTTTATCGTC-GTCACCTTA-TTACTGAGATAGACTCT  47

seq1  CTTCACTGACCTGGTAATTCATTTGTTGGCTAGACTGGCTGATCAGTGTG  100
      ||||||||| ||||| ||||||||| ||||||||||||||||||||||||
seq2  CTTCACTGA-CTGGT-ATTCATTTG-TGGCTAGACTGGCTGATCAGTGTG  94

seq1  CTCCAGAGATTTACCTGTCTCTGTTCTCTGTCTCCAGCACTGGGTTCGTA  150
      ||||||||| ||||||||||||||||||||||||||||||| || |||||
seq2  CTCCAGAGA-TTACCTGTCTCTGTTCTCTGTCTCCAGCACT-GGATCGTA  142

seq1  GACATTCACTGTACACCTGCCCTTTTATGTGATACTAGGGCTCCAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCACTGTACACCTGCCCTTTTATGTGATACTAGGGCTCCAAAATT  192

seq1  ACACCCTTATTTCCTATCAAACATTTTTCTCACTAAGCAATCTCTAAATT  250
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  -CACCCTTATTTCCTATCAAACA-TTTTCTCACTAAGCAATCTCTAAATT  240

seq1  TAACTATGAAAAAAATAATTAAAGCCTATATTGTCATAAGGAGTTAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATGAAAAAAATAATTAAAGCCTATATTGTCATAAGGAGTTAGTAG  290

seq1  AAGTCTCATAACACTCGGTTTTAATTATACAATTACTAAAAATGTCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCATAACACTCGGTTTTAATTATACAATTACTAAAAATGTCTAGA  340

seq1  GCAAGTAATTTTTAACTGACGCTGGC-TTTTGCAGCATCTCATGCAGATG  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAAGTAATTTTTAACTGACGCTGGCTTTTTGCAGCATCTCATGCAGATG  390

seq1  TTTATTTTACATGGAAAATAAATATCACTTACTGTATGAACACCCATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACATGGAAAATAAATATCACTTACTGTATGAACACCCATATA  440

seq1  CTTCTATCCGCATCCCAATCCTGCCTTTAGGGTTCCAGGTTAAGGGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCCGCATCCCAATCCTGCCTTTAGGGTTCCAGGTTAAGGGGAGG  490

seq1  AAGCGCAGGAACCTGGTGTGGAAGGAAGGCTGGAGACTATATTGTACCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCAGGAACCTGGTGTGGAAGGAAGGCTGGAGACTATATTGTACCAC  540

seq1  ACTGTCTGCATTTGTGTTTCCTGGAAATCCCTGTAAAAAACAAAGAGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGCATTTGTGTTTCCTGGAAATCCCTGTAAAAAACAAAGAGGAA  590

seq1  GGGTCAACGTATCTTCAAGATCATTTTTGTATTATCATAGCTTATATCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAACGTATCTTCAAGATCATTTTTGTATTATCATAGCTTATATCAA  640

seq1  TGGTGGCATGTGTTCACTCTGCCTATATCCAAAAGGCTGTCTTCTTTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCATGTGTTCACTCTGCCTATATCCAAAAGGCTGTCTTCTTTCAA  690

seq1  ATAGTTTTGCTAATGTTTAACATAGATATAGCAATTTTGTTTTGCTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTGCTAATGTTTAACATAGATATAGCAATTTTGTTTTGCTTTCT  740

seq1  CAATTATCTACTATTTGCTACATCCACTCCAGTAATGACTTGCTTGACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATCTACTATTTGCTACATCCACTCCAGTAATGACTTGCTTGACAG  790

seq1  ATTTAGGAACCTGGACACAGTCCCGAGGTGAACAGTTTCACGGAAACTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGAACCTGGACACAGTCCCGAGGTGAACAGTTTCACGGAAACTTA  840

seq1  GTCTCCTGGTACTGTGGCATCCCATAGCACGTATGCACCAATTTTGTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGTACTGTGGCATCCCATAGCACGTATGCACCAATTTTGTCCT  890

seq1  TGCAAATGGATCTGTGTGCTTCCTTTCAGTATTGTTTTGTTATAGGTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGGATCTGTGTGCTTCCTTTCAGTATTGTTTTGTTATAGGTACC  940

seq1  TCCAAGCAATGACCTGCCAAATACCTAAGCAAAATTGAACTTTTCTTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAATGACCTGCCAAATACCTAAGCAAAATTGAACTTTTCTTCCT  990

seq1  GGCCTTTACCAATGCCCTAGGTAGTCCTTGAGCCAACCATGGCTTGGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTACCAATGCCCTAGGTAGTCCTTGAGCCAACCATGGCTTGGAAT  1040

seq1  TC  1051
      ||
seq2  TC  1042