BAC Information

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BAC

Clone NameB6Ng01-028G16
Chromosome13 (Build37)
Map Location 24,257,934 - 24,258,477
singlet/doubletsinglet
Overlap geneLrrc16
Upstream geneV1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028G16.bB6Ng01-028G16.g
ACCDH858900DH858901
length869538
definitionDH858900|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G16, 5' end.DH858901|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgattgggggcccactgtcacacttatctggccatgaaatga
gttccttggtcagaagcaatactgtgtggaatgccacgatggagaataaa
gcactctgtgagtccatgggtggtggttttggcagaagcattatgtgcag
gaaaggcaaatccataaccagtaagaacaaagtacaaatctattccagta
catatctattccagtaaaaacaaaactttgtctttccatgtgggaagtgg
tccaatgtaatcaacctgccaccagattcctgtctggtcacctcaaggaa
tggtgccatatctgggactcaatgtcagtctctgatgttgacagatctgg
cattcagcggcagctgtacccaggtcagccttggtgagtggaagtccgag
ttgctgagcccaagcataacctccatctcgaccaccatggccactttgtt
cacgtgcccattgagcaatgacaggaatggctggggaaagaggctgattg
tccacagaaatggtcatcttatccacttgattattgaactcctccttggc
tgaggtcaccttttgatgcgcatttacatggaacatataatatctacaca
gtctttgcctatttggagagatctatccacatactttttcccagatgtct
ttttcaccaattttccaatcatgatctttccaagtccctgatcacccagc
ccatgagtcaatgaacagttggacatctggctatttcttcttccaaagaa
cctgtaatgccatgtgtactacctgaagttctacccactgtaaaggtttc
cctttaccagtatctttcaaggttgtccctgagaggagttgtaatgctgt
aactgcccacttctggctt
catgtgcaattagccagggagagtaacaaagcaatgcttgcagtatgctt
tagatttgtatagaattatctaagctgaaaataagaataatctaaatcaa
tgtatttttgtgacggaggaaaggaccaaaaaaatatatgttaaatactg
agatccagtcatgatcctcggtattgtaaagctttttcacagaaacttca
gaatgatagcactcagtgccacctagcaaggggagagagaaatgacagca
ctcagtgccacctagcaaggggagaagagaaacttcaactctcaacacag
tgttggaaaaattgataacagaagctaacctgttggcaaacacctataat
cccagcacatgggaggctgaagcagtaggatcgtcaggattttgaagcca
gcctgggctatgtactaagattcaagtcaacctgagatataaattgagga
cactgtcaagaaaaaaatggaggggttcagggaagagagaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaagcagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24257934_24258477
seq2: B6Ng01-028G16.g_68_611

seq1  GAATTCCATGTGCAATTAGCCAGGGAGAGTAACAAAGCAATGCTTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGCAATTAGCCAGGGAGAGTAACAAAGCAATGCTTGCAGT  50

seq1  ATGCTTTAGATTTGTATAGAATTATCTAAGCTGAAAATAAGAATAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAGATTTGTATAGAATTATCTAAGCTGAAAATAAGAATAATCTA  100

seq1  AATCAATGTATTTTTGTGACGGAGGAAAGGACCAAAAAAATATATGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGTATTTTTGTGACGGAGGAAAGGACCAAAAAAATATATGTTAA  150

seq1  ATACTGAGATCCAGTCATGATCCTCGGTATTGTAAAGCTTTTTCACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGATCCAGTCATGATCCTCGGTATTGTAAAGCTTTTTCACAGAA  200

seq1  ACTTCAGAATGATAGCACTCAGTGCCACCTAGCAAGGGGAGAGAGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAATGATAGCACTCAGTGCCACCTAGCAAGGGGAGAGAGAAATG  250

seq1  ACAGCACTCAGTGCCACCTAGCAAGGGGAGAAGAGAAACTTCAACTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTCAGTGCCACCTAGCAAGGGGAGAAGAGAAACTTCAACTCTCA  300

seq1  ACACAGTGTTGGAAAAATTGATAACAGAAGCTAACCTGTTGGCAAACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGTTGGAAAAATTGATAACAGAAGCTAACCTGTTGGCAAACACC  350

seq1  TATAATCCCAGCACATGGGAGGCTGAAGCAGTAGGATCGTCAGGATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCCAGCACATGGGAGGCTGAAGCAGTAGGATCGTCAGGATTTTG  400

seq1  AAGCCAGCCTGGGCTATGTACTAAGATTCAAGTCAACCTGAGATATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCCTGGGCTATGTACTAAGATTCAAGTCAACCTGAGATATAAAT  450

seq1  TGAGGACACTGTCAAGAAAAAAATGGAGGGGTTCAGGGAAGAGAGAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACACTGTCAAGAAAAAAATGGAGGGGTTCAGGGAAGAGAGAGGAA  500

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGCAGAGGG  544
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGCAGAGGG  544