BAC Information

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BAC

Clone NameB6Ng01-028K09
Chromosome13 (Build37)
Map Location 71,642,005 - 71,812,321
singlet/doubletdoublet
Overlap geneLOC100042360
Upstream geneBC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
Downstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028K09.bB6Ng01-028K09.g
ACCDH859071DH859072
length1,1171,024
definitionDH859071|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K09, 5' end.DH859072|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,642,005 - 71,643,126)(71,811,291 - 71,812,321)
sequence
gaattccttaggtgctgagacttgttctccattatttgtaacccaactac
attaaataatgcacatggattttaatcagttcaaaaggtatgtcccaaat
tagcagtttcttaaccctatatagacttcacagtatacacttgttattgt
cagactttgtggcccactgcttgtatatcttaacagtgcagatatgtact
actaacttttctccggagactttactcttgttttctagggaaatttgcca
tatttctcatgtccacaccctatccacccttcaccccataatcctgatgt
atactgcccacaaactgtattttagactttgactaaaggtgaatttgtag
tttaacgtgtttccttcccctgtaaagagggtgagtttctgtttattctg
tattctttcctcccatcttccactcttacctcagtcatcaggtttttttt
tttcctttccaagtacttcatttactatgtgccaattttaaaagatttac
acaaaactgtctcatcttccctgtcagtttctttgtgaccttgatggcca
ccccagttaccttcttcggaatgcccatggaatgttaccacccacattaa
ggatgactctttccacttccattagcctaatctagatcatctcttagtgg
cacgaccatagattgttttcatggtgattctaaatctcatcaagctatca
agattgaccattataagaatattcaatagggaacttggtcagtcagccat
gaaaatgacccagtaggtctagtaggactagactgcccacctcttgtacc
tgatttcacatttgcctggcgctgaagacatttatgcttggctctctgtg
cctgctccatcttctacatgcagggttctgtctttcttcacctacatccc
tgtaagaggagagcacgttctcttgcagcatcagatggagagcacagtag
gttgtgctgcccactgagaaagcttttcagtcagaccctctagctcattc
tcaagctggtgtcaaatgtcatgatgtcaaatccttcctttaactcacta
gacctccacgtcagactactccaataaatattactatctttcacctttat
gggcatttttaatggtg
gaattctctaagtctctttgcaagatgggggtttgaaagccacctattat
aaaggtctttgatatcactgaggaggacagactctggaaggacagttcta
ggggttccaggagacattcaataataagactggaagagccactgacaaag
agacctttaacaactctcagtcagagagaggaagcaaagggccagcagct
gataaggatccaaggaagagcctgaacttagaaagtgtgttgtggcagtc
tgctggaggaggagactctccaactcctcaaaacctcaaacacagaaaga
caacccaaaatctaatgtgtagagtgggaaattgccggttccttcctcaa
atctgactgagcgataacaatgtagtaccagaagagaaatcacacccaac
acatcctcacagcctgttgcagatgagagctgcagtactcaacatcaaca
aatccaaacccatgttgtgcttagagaccacagtgaagccttctgcagta
aatacacacaagtctgctctctgagagaagatggatggcaatttcagcaa
tcccctggtttagcctgtgattctccactgctgcacagcccctcaagctt
tgagtgacattccctaattcctcctgctgagaaccacccaccccccagct
tctctgtggcctgagggtcccattgtgggacagcagtaactggtggcctt
tgactcaaggccactggtctgaattttattccaatatagttttaattctt
gtttctttctaggagggggaagttttacaaatgaactatgtatttaaagg
ggtgactcagaaaggaagaaagaaagagcacactactctagccgaaaatg
cctcttctatgagtgacaccaaggtctgggacattctagggagaagaaat
gtggggtctgccactgttgctgaggcaggagtcacttcttcatgacatga
gactaaaaagggtgactctgtgcaggtgatgctgaggctaatgggaagca
tgctctgcctgcaaggaatgagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71642005_71643126
seq2: B6Ng01-028K09.b_48_1164

seq1  GAATTCCTTAGGTGCTGAGACTTGTTCTCCATTATTTGTAACCCAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGGTGCTGAGACTTGTTCTCCATTATTTGTAACCCAACTAC  50

seq1  ATTAAATAATGCACATGGATTTTAATCAGTTCAAAAGGTATGTCCCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAATGCACATGGATTTTAATCAGTTCAAAAGGTATGTCCCAAAT  100

seq1  TAGCAGTTTCTTAACCCTATATAGACTTCACAGTATACACTTGTTATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTTCTTAACCCTATATAGACTTCACAGTATACACTTGTTATTGT  150

seq1  CAGACTTTGTGGCCCACTGCTTGTATATCTTAACAGTGCAGATATGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTGTGGCCCACTGCTTGTATATCTTAACAGTGCAGATATGTACT  200

seq1  ACTAACTTTTCTCCGGAGACTTTACTCTTGTTTTCTAGGGAAATTTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTTTTCTCCGGAGACTTTACTCTTGTTTTCTAGGGAAATTTGCCA  250

seq1  TATTTCTCATGTCCACACCCTATCCACCCTTCACCCCATAATCCTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCATGTCCACACCCTATCCACCCTTCACCCCATAATCCTGATGT  300

seq1  ATACTGCCCACAAACTGTATTTTAGACTTTGACTAAAGGTGAATTTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCCCACAAACTGTATTTTAGACTTTGACTAAAGGTGAATTTGTAG  350

seq1  TTTAACGTGTTTCCTTCCCCTGTAAAGAGGGTGAGTTTCTGTTTATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACGTGTTTCCTTCCCCTGTAAAGAGGGTGAGTTTCTGTTTATTCTG  400

seq1  TATTCTTTCCTCCCATCTTCCACTCTTACCTCAGTCATCAGGTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCCTCCCATCTTCCACTCTTACCTCAGTCATCAGGTTTTTTTT  450

seq1  TTTCCTTTCCAAGTACTTCATTTACTATGTGCCAATTTTAAAAGATTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCAAGTACTTCATTTACTATGTGCCAATTTTAAAAGATTTAC  500

seq1  ACAAAACTGTCTCATCTTCCCTGTCAGTTTCTTTGTGACCTTGATGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGTCTCATCTTCCCTGTCAGTTTCTTTGTGACCTTGATGGCCA  550

seq1  CCCCAGTTACCTTCTTCGGAATGCCCATGGAATGTTACCACCCACATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTTACCTTCTTCGGAATGCCCATGGAATGTTACCACCCACATTAA  600

seq1  GGATGACTCTTTCCACTTCCATTAGCCTAATCTAGATCATCTCTTAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACTCTTTCCACTTCCATTAGCCTAATCTAGATCATCTCTTAGTGG  650

seq1  CACGACCATAGATTGTTTTCATGGTGATTCTAAATCTCATCAAGCTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACCATAGATTGTTTTCATGGTGATTCTAAATCTCATCAAGCTATCA  700

seq1  AGATTGACCATTATAAGAATATTCAATAGGGAACTTGGTCAGTCAGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGACCATTATAAGAATATTCAATAGGGAACTTGGTCAGTCAGCCAT  750

seq1  GAAAATGACCCAGTAGGTCTAGTAGGACTAGACTGCCCACCTCTTGTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGACCCAGTAGGTCTAGTAGGACTAGACTGCCCACCTCTTGTACC  800

seq1  TGATTTTCACATTTGCCTGGCGCTGAAGACATTTATGCTTGGC-CCCTGT  849
      ||| ||||||||||||||||||||||||||||||||||||||| | ||||
seq2  TGA-TTTCACATTTGCCTGGCGCTGAAGACATTTATGCTTGGCTCTCTGT  849

seq1  GCCTGCTCCATC-TCTACATGCAGGGTTCTGTC-TTCCTCACCTACATCC  897
      |||||||||||| |||||||||||||||||||| ||| ||||||||||||
seq2  GCCTGCTCCATCTTCTACATGCAGGGTTCTGTCTTTCTTCACCTACATCC  899

seq1  CTGTAAGAGGAGAGCACGTTCTCCTGCAGCATCAGATGGAGAAGCACAGT  947
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  CTGTAAGAGGAGAGCACGTTCTCTTGCAGCATCAGATGGAG-AGCACAGT  948

seq1  AGGGTTGTGCTGCCCACTGAGAAAGCTTTTCAGTCAGACCCTCCTAGCTC  997
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  A-GGTTGTGCTGCCCACTGAGAAAGCTTTTCAGTCAGACCCT-CTAGCTC  996

seq1  ATTCTCAAGCCTGGTGTCAAAATGTCAGTGATGTCAAAATCCTCCCCTTA  1047
      ||||||||| |||||||| |||||||| ||||||| |||||||  |||| 
seq2  ATTCTCAAG-CTGGTGTC-AAATGTCA-TGATGTC-AAATCCT-TCCTTT  1041

seq1  AACTCAACTAGACCTCCACGTCAAGACTAACTCCCAATAATTATTTACTT  1097
      ||||| |||||||||||||||| ||||| ||| ||||||| || |||| |
seq2  AACTC-ACTAGACCTCCACGTC-AGACT-ACT-CCAATAAATA-TTAC-T  1085

seq1  ATCTTTTCACC--------CTTTTTAATTGGTG  1122
      ||| |||||||        | |||| | |||||
seq2  ATC-TTTCACCTTTATGGGCATTTTTAATGGTG  1117

seq1: chr13_71811291_71812321
seq2: B6Ng01-028K09.g_66_1089 (reverse)

seq1  TGCTCATTTCCTTGCAGGCAGGGCCATCTTCCCACTTAGCCTCAGCATCA  50
      |||||| |||||||||||||| ||   ||||||| |||||||||||||||
seq2  TGCTCA-TTCCTTGCAGGCAGAGCATGCTTCCCA-TTAGCCTCAGCATCA  48

seq1  CCTGCACCAGGTCACCCTTTCTAGTCTTCATGTCATGGAGAAGTGACTCC  100
      |||||||   |||||||||| ||||| |||||||||| ||||||||||||
seq2  CCTGCACAGAGTCACCCTTTTTAGTC-TCATGTCATGAAGAAGTGACTCC  97

seq1  TGCCCTCAGCAACAGTGGCAGATCCCCACATTTTCTTCTCCCTAGAATGT  150
      || ||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TG-CCTCAGCAACAGTGGCAGA-CCCCACA-TTTCTTCTCCCTAGAATGT  144

seq1  CCCAGACCTTTGGTGTCACTCATAGAAGAGGCATTTTCGGCTAGAGTAGT  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACC-TTGGTGTCACTCATAGAAGAGGCATTTTCGGCTAGAGTAGT  193

seq1  GTGCTCTTTCTTTCTTCCTTTCTGAGTCACCCCTTTAAATACATAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTTCTTTCTTCCTTTCTGAGTCACCCCTTTAAATACATAGTTCA  243

seq1  TTTGTAAAACTTCCCCCTCCTAGAAAGAAACAAGAATTAAAACTATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAACTTCCCCCTCCTAGAAAGAAACAAGAATTAAAACTATATTG  293

seq1  GAATAAAATTCAGACCAGTGGCCTTGAGTCAAAGGCCACCAGTTACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATTCAGACCAGTGGCCTTGAGTCAAAGGCCACCAGTTACTGCT  343

seq1  GTCCCACAATGGGACCCTCAGGCCACAGAGAAGCTGGGGGGTGGGTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACAATGGGACCCTCAGGCCACAGAGAAGCTGGGGGGTGGGTGGTT  393

seq1  CTCAGCAGGAGGAATTAGGGAATGTCACTCAAAGCTTGAGGGGCTGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGGAGGAATTAGGGAATGTCACTCAAAGCTTGAGGGGCTGTGCA  443

seq1  GCAGTGGAGAATCACAGGCTAAACCAGGGGATTGCTGAAATTGCCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGAGAATCACAGGCTAAACCAGGGGATTGCTGAAATTGCCATCCA  493

seq1  TCTTCTCTCAGAGAGCAGACTTGTGTGTATTTACTGCAGAAGGCTTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCAGAGAGCAGACTTGTGTGTATTTACTGCAGAAGGCTTCACT  543

seq1  GTGGTCTCTAAGCACAACATGGGTTTGGATTTGTTGATGTTGAGTACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCTAAGCACAACATGGGTTTGGATTTGTTGATGTTGAGTACTGC  593

seq1  AGCTCTCATCTGCAACAGGCTGTGAGGATGTGTTGGGTGTGATTTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCATCTGCAACAGGCTGTGAGGATGTGTTGGGTGTGATTTCTCTT  643

seq1  CTGGTACTACATTGTTATCGCTCAGTCAGATTTGAGGAAGGAACCGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTACATTGTTATCGCTCAGTCAGATTTGAGGAAGGAACCGGCAA  693

seq1  TTTCCCACTCTACACATTAGATTTTGGGTTGTCTTTCTGTGTTTGAGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACTCTACACATTAGATTTTGGGTTGTCTTTCTGTGTTTGAGGTT  743

seq1  TTGAGGAGTTGGAGAGTCTCCTCCTCCAGCAGACTGCCACAACACACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGTTGGAGAGTCTCCTCCTCCAGCAGACTGCCACAACACACTTT  793

seq1  CTAAGTTCAGGCTCTTCCTTGGATCCTTATCAGCTGCTGGCCCTTTGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTCAGGCTCTTCCTTGGATCCTTATCAGCTGCTGGCCCTTTGCTT  843

seq1  CCTCTCTCTGACTGAGAGTTGTTAAAGGTCTCTTTGTCAGTGGCTCTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTGACTGAGAGTTGTTAAAGGTCTCTTTGTCAGTGGCTCTTCC  893

seq1  AGTCTTATTATTGAATGTCTCCTGGAACCCCTAGAACTGTCCTTCCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATTATTGAATGTCTCCTGGAACCCCTAGAACTGTCCTTCCAGAG  943

seq1  TCTGTCCTCCTCAGTGATATCAAAGACCTTTATAATAGGTGGCTTTCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCCTCAGTGATATCAAAGACCTTTATAATAGGTGGCTTTCAAA  993

seq1  CCCCCATCTTGCAAAGAGACTTAGAGAATTC  1031
      |||||||||||||||||||||||||||||||
seq2  CCCCCATCTTGCAAAGAGACTTAGAGAATTC  1024