BAC Information

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BAC

Clone NameB6Ng01-030C04
Chromosome13 (Build37)
Map Location 100,317,024 - 100,441,517
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030C04.bB6Ng01-030C04.g
ACCDH860132DH860133
length1,049869
definitionDH860132|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C04, 5' end.DH860133|Mus musculus domesticus DNA, BAC clone: B6Ng01-030C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,440,460 - 100,441,517)(100,317,024 - 100,317,895)
sequence
gaattccagttcatctcgctgtagaaatgatgactctgtctctggtctcc
acttgaccctcactgaagtggtcaggggtctctgcttctccaggatctga
acacctcaatctgtggcctccctgggaagccattgctgctggcagagcag
ctgctcccataaattctgatgttctcttgcacagggctcctgctgtgtta
atcaggaaaactgcatgcatgcagcgccaggagtaaacatgcaaggtctt
acaaattcgtgtgaggaacacaaaggaggtgccgcctgctctcccggtgg
ctcccacttgaacccaggcctcatgagcctgcaacactgggaagaacaga
tcttattggccttctccaaggcaaagagagcgtgctgacaagcaccagtt
gggtgacacccacaggttcccacctgcagcagcctgtgctcacacctggg
taggctgctccctcccagtcccggttctgcctcctgcagtgaccacctac
actggcttcctttgggttaggatggaggggatgaaagggaacggcagaaa
atgagaaacatggagagggatgcctgctagcaatccagacttccatcttc
tttttctatccataccaggcataccaagaatcctctctgattaactaaag
acatcaagcatggatacagtggctagtttctcctcacacacacccccact
cccctccctggtaagatttagcatcttctcatatccctttaccggtagat
caatccataaggccttagctaatgtgtagaagtcactggtggtccatctt
tggtaacagaatgtctgtatgacaatgtgtgctgatctttatgaaagaaa
gatggaatgtgctggctcctgcatagggacagaaagaaaggaaacgtctg
tcagaccctgcttctccagggctgttctcgagctgctcccctctctggtg
cttcccatgatgccttcattctcctccactctgtctgctctctgaaactc
tccagaagaactggggttctctggcttgaaggttaggcctgggcctgcc
gaattctatggagaacggtccctcgaaaatacttaaagaaccatatatct
ctaatgagtctagggatgactttcagtcaggttatttttttaaaaatcta
tttgagtgtgtttggcttgttagttcttttgagagagggtctcactgtgt
aacctcaccccacctcaccccaccccaccccgccccgccccaccagcctg
gaatttactctacaggcgaagctggtcataaacatgaagtttgggattac
aggcgtataccaccatgtgtgctattttcgtattgctttttaaaatattt
tgtttctattatttttaattatgtatatgtgagagtgggtatgtgcgggt
gcctgcagagaccagggatgtcagatccctcagagttatagctacaggcg
gttaggagctgctgatgtaggtgctgggcacagagcttggggcttctccg
agagcagtaggagctcttaactgctgggctgtatctctagtgccttgttt
gttttatgtgtctctttgttttgtttctgagacaaggtcccattctggag
ccttggatcttcctgctctagccttccaaggtgctgggattatatacata
tgctaactcactcaggtcaagtatcttcttcatgaacataagaagctgct
ggtatggtctttatgctgatttcaagattcttcccccaaagaaggcttct
agcagtttcctttccacatcatggtaaagatgcattcagtgctggcttgg
aggatgcgcatcttatcctggggtcagcacagcactggatccaaaaggga
aaggttcacacacgcacactcacacaccactcccacaagatgacctgctt
gagctgttctgctttgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100440460_100441517
seq2: B6Ng01-030C04.b_43_1090 (reverse)

seq1  GCAGGCACAGGGCCTAACC-TCAAGCCAGAGAAACCCACAGGTCTTCTGG  49
      |||||| || ||||||||| |||||||||||||  || ||| ||||||||
seq2  GCAGGCCCA-GGCCTAACCTTCAAGCCAGAGAA--CCCCAGTTCTTCTGG  47

seq1  AGAGTTTTCAGAGAGCAAGACAAGAGTGGAGGAGAATGAAAGGCATCATG  99
      |||| ||||||||||| |||| |||||||||||||||| |||||||||||
seq2  AGAG-TTTCAGAGAGC-AGAC-AGAGTGGAGGAGAATG-AAGGCATCATG  93

seq1  GGAAAGCACCAGAGAGGGGAGCAGCTCTGAGAACAGCCCTGGGAGAAGCA  149
      || |||||||||||||||||||||||| |||||||||||| |||||||||
seq2  GG-AAGCACCAGAGAGGGGAGCAGCTC-GAGAACAGCCCT-GGAGAAGCA  140

seq1  GGGTCCTGACAGACGTTTCCCTTCTTTCTGTCCCTATGCAGGAGCCAGCA  199
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGT-CTGACAGACGTTTCCTTTCTTTCTGTCCCTATGCAGGAGCCAGCA  189

seq1  CATTCCATCTTTCTTTCATAAAGATCAGCACACATTGTCATACAGACATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATCTTTCTTTCATAAAGATCAGCACACATTGTCATACAGACATT  239

seq1  CTGTTACCAAAGATGGACCACCAGTGACTTCTACACATTAGCTAAGGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCAAAGATGGACCACCAGTGACTTCTACACATTAGCTAAGGCCT  289

seq1  TATGGATTGATCTACCGGTAAAGGGATATGAGAAGATGCTAAATCTTACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTGATCTACCGGTAAAGGGATATGAGAAGATGCTAAATCTTACC  339

seq1  AGGGAGGGGAGTGGGGGTGTGTGTGAGGAGAAACTAGCCACTGTATCCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGGAGTGGGGGTGTGTGTGAGGAGAAACTAGCCACTGTATCCAT  389

seq1  GCTTGATGTCTTTAGTTAATCAGAGAGGATTCTTGGTATGCCTGGTATGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATGTCTTTAGTTAATCAGAGAGGATTCTTGGTATGCCTGGTATGG  439

seq1  ATAGAAAAAGAAGATGGAAGTCTGGATTGCTAGCAGGCATCCCTCTCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAAGAAGATGGAAGTCTGGATTGCTAGCAGGCATCCCTCTCCAT  489

seq1  GTTTCTCATTTTCTGCCGTTCCCTTTCATCCCCTCCATCCTAACCCAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCATTTTCTGCCGTTCCCTTTCATCCCCTCCATCCTAACCCAAAG  539

seq1  GAAGCCAGTGTAGGTGGTCACTGCAGGAGGCAGAACCGGGACTGGGAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAGTGTAGGTGGTCACTGCAGGAGGCAGAACCGGGACTGGGAGGG  589

seq1  AGCAGCCTACCCAGGTGTGAGCACAGGCTGCTGCAGGTGGGAACCTGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTACCCAGGTGTGAGCACAGGCTGCTGCAGGTGGGAACCTGTGG  639

seq1  GTGTCACCCAACTGGTGCTTGTCAGCACGCTCTCTTTGCCTTGGAGAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACCCAACTGGTGCTTGTCAGCACGCTCTCTTTGCCTTGGAGAAGG  689

seq1  CCAATAAGATCTGTTCTTCCCAGTGTTGCAGGCTCATGAGGCCTGGGTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAGATCTGTTCTTCCCAGTGTTGCAGGCTCATGAGGCCTGGGTTC  739

seq1  AAGTGGGAGCCACCGGGAGAGCAGGCGGCACCTCCTTTGTGTTCCTCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGAGCCACCGGGAGAGCAGGCGGCACCTCCTTTGTGTTCCTCACA  789

seq1  CGAATTTGTAAGACCTTGCATGTTTACTCCTGGCGCTGCATGCATGCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTTGTAAGACCTTGCATGTTTACTCCTGGCGCTGCATGCATGCAGT  839

seq1  TTTCCTGATTAACACAGCAGGAGCCCTGTGCAAGAGAACATCAGAATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGATTAACACAGCAGGAGCCCTGTGCAAGAGAACATCAGAATTTA  889

seq1  TGGGAGCAGCTGCTCTGCCAGCAGCAATGGCTTCCCAGGGAGGCCACAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCAGCTGCTCTGCCAGCAGCAATGGCTTCCCAGGGAGGCCACAGA  939

seq1  TTGAGGTGTTCAGATCCTGGAGAAGCAGAGACCCCTGACCACTTCAGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTGTTCAGATCCTGGAGAAGCAGAGACCCCTGACCACTTCAGTGA  989

seq1  GGGTCAAGTGGAGACCAGAGACAGAGTCATCATTTCTACAGCGAGATGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAGTGGAGACCAGAGACAGAGTCATCATTTCTACAGCGAGATGAA  1039

seq1  CTGGAATTC  1058
      |||||||||
seq2  CTGGAATTC  1048

seq1: chr13_100317024_100317895
seq2: B6Ng01-030C04.g_65_933

seq1  GAATTCTATGGAGAACGGTCCCTCGAAAATACTTAAAGAACCATATATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGAGAACGGTCCCTCGAAAATACTTAAAGAACCATATATCT  50

seq1  CTAATGAGTCTAGGGATGACTTTCAGTCAGGTTATTTTTTTAAAAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGTCTAGGGATGACTTTCAGTCAGGTTATTTTTTTAAAAATCTA  100

seq1  TTTGAGTGTGTTTGGCTTGTTAGTTCTTTTGAGAGAGGGTCTCACTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGTGTTTGGCTTGTTAGTTCTTTTGAGAGAGGGTCTCACTGTGT  150

seq1  AACCTCACCCCACCTCACCCCACCCCACCCCGCCCCGCCCCACCAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACCCCACCTCACCCCACCCCACCCCGCCCCGCCCCACCAGCCTG  200

seq1  GAATTTACTCTACAGGCGAAGCTGGTCATAAACATGAAGTTTGGGATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACTCTACAGGCGAAGCTGGTCATAAACATGAAGTTTGGGATTAC  250

seq1  AGGCGTATACCACCATGTGTGCTATTTTCGTATTGCTTTTTAAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTATACCACCATGTGTGCTATTTTCGTATTGCTTTTTAAAATATTT  300

seq1  TGTTTCTATTATTTTTAATTATGTATATGTGAGAGTGGGTATGTGCGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATTATTTTTAATTATGTATATGTGAGAGTGGGTATGTGCGGGT  350

seq1  GCCTGCAGAGACCAGGGATGTCAGATCCCTCAGAGTTATAGCTACAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGAGACCAGGGATGTCAGATCCCTCAGAGTTATAGCTACAGGCG  400

seq1  GTTAGGAGCTGCTGATGTAGGTGCTGGGCACAGAGCTTGGGGCTTCTCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGCTGCTGATGTAGGTGCTGGGCACAGAGCTTGGGGCTTCTCCG  450

seq1  AGAGCAGTAGGAGCTCTTAACTGCTGGGCTGTATCTCTAGTGCCTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTAGGAGCTCTTAACTGCTGGGCTGTATCTCTAGTGCCTTGTTT  500

seq1  GTTTTATGTGTCTCTTTGTTTTGTTTCTGAGACAAGGTCCCATTCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGTGTCTCTTTGTTTTGTTTCTGAGACAAGGTCCCATTCTGGAG  550

seq1  CCTTGGATCTTCCTGCTCTAGCCTTCCAAGGTGCTGGGATTATATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATCTTCCTGCTCTAGCCTTCCAAGGTGCTGGGATTATATACATA  600

seq1  TGCTAACTCACTCAGGTCAAGTATCTTCTTCATGAACATAAGAAGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTCACTCAGGTCAAGTATCTTCTTCATGAACATAAGAAGCTGCT  650

seq1  GGTATGGTCTTTATGCTGATTTCAAGATTCTTCCCCCAAAGAAGGCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGTCTTTATGCTGATTTCAAGATTCTTCCCCCAAAGAAGGCTTCT  700

seq1  AGCAGTTTCCTTTCCACATCATGGTAAAGATGCATTCAGTGCTGGCTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTCCTTTCCACATCATGGTAAAGATGCATTCAGTGCTGGCTTGG  750

seq1  AGGATGCGCATCTTATCCTGGGGTCAGCACAGCACTGGATCCAAAAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCGCATCTTATCCTGGGGTCAGCACAGCACTGGATCCAAAAGGGA  800

seq1  AAGGTTCACACACGCACACACACACACAACTCCAACAAGATGAACCTGCT  850
      ||||||||||||||||||| ||||||| ||||| |||||||| |||||||
seq2  AAGGTTCACACACGCACACTCACACACCACTCCCACAAGATG-ACCTGCT  849

seq1  TGAGCTGTTTTCTGCTTTGTCT  872
      |||||||  |||||||||||||
seq2  TGAGCTG--TTCTGCTTTGTCT  869