BAC Information

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BAC

Clone NameB6Ng01-030L24
Chromosome13 (Build37)
Map Location 99,582,710 - 99,680,378
singlet/doubletdoublet
Overlap geneFcho2, Tnpo1, EG432798
Upstream geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675
Downstream geneLOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b, Cartpt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030L24.bB6Ng01-030L24.g
ACCDH860562DH860563
length1,027646
definitionDH860562|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L24, 5' end.DH860563|Mus musculus domesticus DNA, BAC clone: B6Ng01-030L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,679,344 - 99,680,378)(99,582,710 - 99,583,352)
sequence
gaattcctgtaaaggtagtgaagttttctagaatcttgttttagcctaaa
tatagaactgaatcaaaaggctagaatagtatttccatgtcagaaataca
tgtatttaacaacagtgacggaggggcaaaataaaggagaaggcatgaaa
aggagagcactcgaggattctaacttacctcatatcacacacacacacac
acacatagacaatacatacatacatacatatccagagttaaaacgatgca
tgcattttgttaaatctacatgctagagatggttgctgctggcagttgtt
tttaactgaaggatcgatcacctcacaacgacttctgcagattgagtgtc
catgcccccgcccttctctagggaaaggtttaggaattttataagaagtg
cagctcttgctgagataggaacggtgagtcctttgaggcattgcctcaca
cacgggtgacttccttggtggctgtccttccgtgtggcagttttactagt
acatggcagtatcttaaagacgtagggaactgctgcaaggtgcttacagt
gctgtttgttttggaagtcaattaaattgtgggctgtaagtgcgtgtagt
ctccagtgcttatccactcagagtgatgcagacactcgcattatgcctca
cttctctgctaccccttcttaccaaaccagcttcactcagcccagcccag
ccacagcacgttttcaattgtgagcactgtcatttgctgttttctgaaag
gtttttaaaaataactgaattcagtgttctatgaactgtttctcagcaag
tgctgctccatttactccttcagcgagcaccgctcacagttgaaggggag
tgcatttagtttcttgtagtgcgtcactacatacgtttcccatagataat
gtagttataattcgttaaatctgttcacttactatacacgagtctcaaac
ccagtgtaagtcacagctttcttttctggtagcttttgtttggttttggg
gttttggttttttttttttggtttttg
gaattctctaaacaggtacaaaacctcatctgatgtctgaacaggagtgg
aggagccttggtgttcaacagagtctaggacgggttcagtacaccactca
ggagtcaaaactgcacattctctttagacaccttttccaacacacacaca
catctaatgtcatctaatctttttcaaatttaatgtttatgtgtatataa
ggtagtattcagtgaatacttgaaaaacacacaaatctttcactcttatc
aacaagtgctcagttaaatacaactgcaagtaggttcttttaagttactg
aaaacaaattttcttgtagttttcttttcttaatacaagtgcatgtttta
ttttacctgttacttttagtaaataaagtttgtatgttgcagggagggaa
ggagggagggaaggtataccggtatatgtatctaaaggtctggcatggtg
tgcctgggaagcagaagcaggcaatctgagttaaaaacaacctggtctac
acagtgtgctccaggacagccagggctatgtaaatagaccctatctcaaa
aaaaaaaaaaaaaaaaaaaaaaagttagggctaaaagaaatgatacacac
cggtattccccagcattctgtaggcatatacaggaggatctgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_99679344_99680378
seq2: B6Ng01-030L24.b_47_1072 (reverse)

seq1  AAAAACAAAAAAAAAAAAAACCAAAACTCCCAAAACCAGACAAAAGCTAC  50
      ||||||  ||||||||||||||||||| |||||||||| |||||||||| 
seq2  AAAAAC-CAAAAAAAAAAAACCAAAAC-CCCAAAACCAAACAAAAGCTA-  47

seq1  CCAGAAAAGAAAGCCTGTGACTCTACACTGGGTTTTGAGACTCGTGTAAT  100
      ||||||||||||| |||||||| ||||||||| |||||||||||||| ||
seq2  CCAGAAAAGAAAG-CTGTGACT-TACACTGGG-TTTGAGACTCGTGT-AT  93

seq1  AGTAAGTGGAACAGATTTTAACGAATTATAACTACATTATCTATGGGAAA  150
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTAAGT-GAACAGA-TTTAACGAATTATAACTACATTATCTATGGGAAA  141

seq1  CGTATGTAGTGACGCACTACAAGAAACTAAATGCACTCCCCTTCAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGTAGTGACGCACTACAAGAAACTAAATGCACTCCCCTTCAACTGT  191

seq1  GAGCGGTGCTCGCCTGAAGGAGTAAATGGAGCAGCACTTGCTGAGAAACA  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGCGGTGCTCG-CTGAAGGAGTAAATGGAGCAGCACTTGCTGAGAAACA  240

seq1  GTTCATAGAACACTGAATTCAGTTATTTTTAAAAACC-TTCAGAAAACAG  299
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTTCATAGAACACTGAATTCAGTTATTTTTAAAAACCTTTCAGAAAACAG  290

seq1  CAAATGACAGTGCTCACAATTGAAAACGTGCTGTGGCTGGGCTGGGCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACAGTGCTCACAATTGAAAACGTGCTGTGGCTGGGCTGGGCTGA  340

seq1  GTGAAGCTGGTTTGGTAAGAAGGGGTAGCAGAGAAGTGAGGCATAATGCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTGGTTTGGTAAGAAGGGGTAGCAGAGAAGTGAGGCATAATGCG  390

seq1  AGTGTCTGCATCACTCTGAGTGGATAAGCACTGGAGACTACACGCACTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGCATCACTCTGAGTGGATAAGCACTGGAGACTACACGCACTTA  440

seq1  CAGCCCACAATTTAATTGACTTCCAAAACAAACAGCACTGTAAGCACCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACAATTTAATTGACTTCCAAAACAAACAGCACTGTAAGCACCTT  490

seq1  GCAGCAGTTCCCTACGTCTTTAAGATACTGCCATGTACTAGTAAAACTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTTCCCTACGTCTTTAAGATACTGCCATGTACTAGTAAAACTGC  540

seq1  CACACGGAAGGACAGCCACCAAGGAAGTCACCCGTGTGTGAGGCAATGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGAAGGACAGCCACCAAGGAAGTCACCCGTGTGTGAGGCAATGCC  590

seq1  TCAAAGGACTCACCGTTCCTATCTCAGCAAGAGCTGCACTTCTTATAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGACTCACCGTTCCTATCTCAGCAAGAGCTGCACTTCTTATAAAA  640

seq1  TTCCTAAACCTTTCCCTAGAGAAGGGCGGGGGCATGGACACTCAATCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAACCTTTCCCTAGAGAAGGGCGGGGGCATGGACACTCAATCTGC  690

seq1  AGAAGTCGTTGTGAGGTGATCGATCCTTCAGTTAAAAACAACTGCCAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCGTTGTGAGGTGATCGATCCTTCAGTTAAAAACAACTGCCAGCA  740

seq1  GCAACCATCTCTAGCATGTAGATTTAACAAAATGCATGCATCGTTTTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCATCTCTAGCATGTAGATTTAACAAAATGCATGCATCGTTTTAAC  790

seq1  TCTGGATATGTATGTATGTATGTATTGTCTATGTGTGTGTGTGTGTGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATATGTATGTATGTATGTATTGTCTATGTGTGTGTGTGTGTGTGT  840

seq1  GATATGAGGTAAGTTAGAATCCTCGAGTGCTCTCCTTTTCATGCCTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGGTAAGTTAGAATCCTCGAGTGCTCTCCTTTTCATGCCTTCTC  890

seq1  CTTTATTTTGCCCCTCCGTCACTGTTGTTAAATACATGTATTTCTGACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTGCCCCTCCGTCACTGTTGTTAAATACATGTATTTCTGACAT  940

seq1  GGAAATACTATTCTAGCCTTTTGATTCAGTTCTATATTTAGGCTAAAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACTATTCTAGCCTTTTGATTCAGTTCTATATTTAGGCTAAAACA  990

seq1  AGATTCTAGAAAACTTCACTACCTTTACAGGAATTC  1035
      ||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAGAAAACTTCACTACCTTTACAGGAATTC  1026

seq1: chr13_99582710_99583352
seq2: B6Ng01-030L24.g_66_711

seq1  GAATTCTCTAAACAGGTACAAAACCTCATCTGATGTCTGAACAGGAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAACAGGTACAAAACCTCATCTGATGTCTGAACAGGAGTGG  50

seq1  AGGAGCCTTGGTGTTCAACAGAGTCTAGGACGGGTTCAGTACACCACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTTGGTGTTCAACAGAGTCTAGGACGGGTTCAGTACACCACTCA  100

seq1  GGAGTCAAAACTGCACATTCTCTTTAGACACCTTTTCCAACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAAACTGCACATTCTCTTTAGACACCTTTTCCAACACACACACA  150

seq1  CATCTAATGTCATCTAATCTTTTTCAAATTTAATGTTTATGTGTATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATGTCATCTAATCTTTTTCAAATTTAATGTTTATGTGTATATAA  200

seq1  GGTAGTATTCAGTGAATACTTGAAAAACACACAAATCTTTCACTCTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTATTCAGTGAATACTTGAAAAACACACAAATCTTTCACTCTTATC  250

seq1  AACAAGTGCTCAGTTAAATACAACTGCAAGTAGGTTCTTTTAAGTTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGCTCAGTTAAATACAACTGCAAGTAGGTTCTTTTAAGTTACTG  300

seq1  AAAACAAATTTTCTTGTAGTTTTCTTTTCTTAATACAAGTGCATGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATTTTCTTGTAGTTTTCTTTTCTTAATACAAGTGCATGTTTTA  350

seq1  TTTTACCTGTTACTTTTAGTAAATAAAGTTTGTATGTTGCAGGGAGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTGTTACTTTTAGTAAATAAAGTTTGTATGTTGCAGGGAGGGAA  400

seq1  GGAGGGAGGGAAGGTATACCGGTATATGTATCTAAAGGTCTGGCATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAAGGTATACCGGTATATGTATCTAAAGGTCTGGCATGGTG  450

seq1  TGCCTGGGAAGCAGAAGCAGGCAATCTGAGTTAAAAACAACCTGGTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGAAGCAGAAGCAGGCAATCTGAGTTAAAAACAACCTGGTCTAC  500

seq1  ACAGTGTGCTCCAGGACAGCCAGGGCTATGTAAATAGACCCTATCTC--A  548
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  ACAGTGTGCTCCAGGACAGCCAGGGCTATGTAAATAGACCCTATCTCAAA  550

seq1  AAAAAAAAAAAAAAAAAAAAAAAGTTAGGGCTAATAGAAATGACACACAC  598
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAGTTAGGGCTAAAAGAAATGATACACAC  600

seq1  CGGTATT-CCCAGCAGTCTGTAGGCAGAGACAGGAGGATCAGAAGG  643
      ||||||| ||||||| |||||||||| | ||||||||||| |||||
seq2  CGGTATTCCCCAGCATTCTGTAGGCATATACAGGAGGATCTGAAGG  646