BAC Information

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BAC

Clone NameB6Ng01-031M22
Chromosome13 (Build37)
Map Location 112,388,481 - 112,546,879
singlet/doubletdoublet
Overlap geneLOC100040666, Mier3, Map3k1
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
Downstream geneLOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M22.bB6Ng01-031M22.g
ACCDH861321DH861322
length3991,062
definitionDH861321|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M22, 5' end.DH861322|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,388,481 - 112,388,879)(112,545,814 - 112,546,879)
sequence
gaattcagtatcagaggtggagtctggacggaacaaaggtcccaggtgtg
ccgcggggaggacaaagttgatctggagtaaaggtcactgcctatcaagc
caacccagaccaaggatgctggagacttaacctatgcaggctcaaagcac
ttgggccactgacaaatatcacagagaaagaaccagggcggattgccctg
ggttcaaggccagcctgagccactgagtgagacccaaataccaacaatta
aacaataacaacatcaaaacaagtatagcaaaagctggccatggtggtgc
ataactgaatcacacattggaaggcagggcagaggcaagagggctgtgcc
aactggggcttcagagtgaggaagagagaaggaggagggagggaggaaa
gaattctatcctcatattgtcagtactgatgtctcacaagctgagcctgt
tgaaatcaggtaattcttgtagaaatcagaacctgtctcttccttcttgc
tcacatatcccgcagtggtagactaataccttcatatttgagtagcatag
aagcctgaagactgggctaaacatttacaaatccttcataccaaagtggt
ttttgtgtacgagggcaggctatacattgcctttttaaaactgcgttatt
tttctgttcatttgagcttttccagtcgttgaaggtgtcctgcctcgttt
ttccttcaggtacaagaagctgctctccctcttaacctttgccttgcaat
ccattgacaattcccactcgatggttggcaagctctctcggaggatatat
ctgagctctgccaggatggtgaccgcagtgcccgctgtgttttccaagct
ggtaaccatgcttaatgcttctggctccacccacttcaccaggatgcgcc
ggcgtctgatggctatcgcggatgaggtagaaattgccgaggtcatccag
ctgggtgtggaggacactgtggatgggcatcaggacagcttacaggtgct
ggcccccgccagctgtctagaaaacagctcccttgagcacacagtccata
gagagaaaactggaaaaggactaagtgctacgagactgagtgccagctcg
gaggacatttctgacagactggccggcgtctctgtaggacttcccagctc
aacaacaacagaacaaccaaagccagcggttcaaacaaaaggcagacccc
acagtcagtgtttgaactcctcccctttgtctcatgctcaattaatgttc
ccagcaccatcagccccttgttcctctgcccgtctgtcccagatatttct
aagcacagaccccaagcatttgttccctgcaaatactttcgcatctcctc
agaaacagcgcaagttctctctacaattcagaggaactgctctgaacacc
gagaactcagaaccagctctcccagtcttcactcaatcaaggccccaccc
ttcagtaacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_112388481_112388879
seq2: B6Ng01-031M22.b_47_445

seq1  GAATTCAGTATCAGAGGTGGAGTCTGGACGGAACAAAGGTCCCAGGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCAGAGGTGGAGTCTGGACGGAACAAAGGTCCCAGGTGTG  50

seq1  CCGCGGGGAGGACAAAGTTGATCTGGAGTAAAGGTCACTGCCTATCAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGGGGAGGACAAAGTTGATCTGGAGTAAAGGTCACTGCCTATCAAGC  100

seq1  CAACCCAGACCAAGGATGCTGGAGACTTAACCTATGCAGGCTCAAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAGACCAAGGATGCTGGAGACTTAACCTATGCAGGCTCAAAGCAC  150

seq1  TTGGGCCACTGACAAATATCACAGAGAAAGAACCAGGGCGGATTGCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCACTGACAAATATCACAGAGAAAGAACCAGGGCGGATTGCCCTG  200

seq1  GGTTCAAGGCCAGCCTGAGCCACTGAGTGAGACCCAAATACCAACAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAGGCCAGCCTGAGCCACTGAGTGAGACCCAAATACCAACAATTA  250

seq1  AACAATAACAACATCAAAACAAGTATAGCAAAAGCTGGCCATGGTGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAACAACATCAAAACAAGTATAGCAAAAGCTGGCCATGGTGGTGC  300

seq1  ATAACTGAATCACACATTGGAAGGCAGGGCAGAGGCAAGAGGGCTGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAATCACACATTGGAAGGCAGGGCAGAGGCAAGAGGGCTGTGCC  350

seq1  AACTGGGGCTTCAGAGTGAGGAAGAGAGAAGGAGGAGGGAGGGAGGAAA  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGGCTTCAGAGTGAGGAAGAGAGAAGGAGGAGGGAGGGAGGAAA  399

seq1: chr13_112545814_112546879
seq2: B6Ng01-031M22.g_69_1130 (reverse)

seq1  TATGTTACTGGAGGGTGGGGGCCTTGACTGAGTGAAGACTGGGGAGAGCT  50
      |||||||||| ||||| |||||||||| |||||||||||| |||||||||
seq2  TATGTTACTGAAGGGT-GGGGCCTTGATTGAGTGAAGACT-GGGAGAGCT  48

seq1  GG-TCTGAG-TCTCGGTGTTCAGAGCAGTTCCTCTGGAATTGTAGAGAGA  98
      || |||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  GGTTCTGAGTTCTCGGTGTTCAGAGCAGTTCCTCT-GAATTGTAGAGAGA  97

seq1  ACTTGCGCTGTGTCTGAGGAGATGCGGAAGGTATTTTGCAGGGAACAAAT  148
      ||||||||||| ||||||||||||| ||| ||| ||||||||||||||||
seq2  ACTTGCGCTGTTTCTGAGGAGATGC-GAAAGTA-TTTGCAGGGAACAAAT  145

seq1  GCCTGGGGTCTGTGCTTAGAAATATCTGGGACAGACGGGGCAGAGGAACA  198
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCTTGGGGTCTGTGCTTAGAAATATCTGGGACAGAC-GGGCAGAGGAACA  194

seq1  AGGGGCTGATGGTGCTGGGAACATTAATTGAGCATGAGACAAAGGGGAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGATGGTGCTGGGAACATTAATTGAGCATGAGACAAAGGGGAGG  244

seq1  AGTTCAAACACTGACTGTGGGGTCTGCCTTTTGTTTGAACCGCTGGCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAACACTGACTGTGGGGTCTGCCTTTTGTTTGAACCGCTGGCTTT  294

seq1  GGTTGTTCTGTTGTTGTTGAGCTGGGAAGTCCTACAGAGACGCCGGCCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCTGTTGTTGTTGAGCTGGGAAGTCCTACAGAGACGCCGGCCAG  344

seq1  TCTGTCAGAAATGTCCTCCGAGCTGGCACTCAGTCTCGTAGCACTTAGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGAAATGTCCTCCGAGCTGGCACTCAGTCTCGTAGCACTTAGTC  394

seq1  CTTTTCCAGTTTTCTCTCTATGGACTGTGTGCTCAAGGGAGCTGTTTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAGTTTTCTCTCTATGGACTGTGTGCTCAAGGGAGCTGTTTTCT  444

seq1  AGACAGCTGGCGGGGGCCAGCACCTGTAAGCTGTCCTGATGCCCATCCAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTGGCGGGGGCCAGCACCTGTAAGCTGTCCTGATGCCCATCCAC  494

seq1  AGTGTCCTCCACACCCAGCTGGATGACCTCGGCAATTTCTACCTCATCCG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCCACACCCAGCTGGATGACCTCGGCAATTTCTACCTCATCCG  544

seq1  CGATAGCCATCAGACGCCGGCGCATCCTGGTGAAGTGGGTGGAGCCAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGCCATCAGACGCCGGCGCATCCTGGTGAAGTGGGTGGAGCCAGAA  594

seq1  GCATTAAGCATGGTTACCAGCTTGGAAAACACAGCGGGCACTGCGGTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGCATGGTTACCAGCTTGGAAAACACAGCGGGCACTGCGGTCAC  644

seq1  CATCCTGGCAGAGCTCAGATATATCCTCCGAGAGAGCTTGCCAACCATCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGCAGAGCTCAGATATATCCTCCGAGAGAGCTTGCCAACCATCG  694

seq1  AGTGGGAATTGTCAATGGATTGCAAGGCAAAGGTTAAGAGGGAGAGCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAATTGTCAATGGATTGCAAGGCAAAGGTTAAGAGGGAGAGCAGC  744

seq1  TTCTTGTACCTGAAGGAAAAACGAGGCAGGACACCTTCAACGACTGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTACCTGAAGGAAAAACGAGGCAGGACACCTTCAACGACTGGAAA  794

seq1  AGCTCAAATGAACAGAAAAATAACGCAGTTTTAAAAAGGCAATGTATAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAATGAACAGAAAAATAACGCAGTTTTAAAAAGGCAATGTATAGC  844

seq1  CTGCCCTCGTACACAAAAACCACTTTGGTATGAAGGATTTGTAAATGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCGTACACAAAAACCACTTTGGTATGAAGGATTTGTAAATGTTT  894

seq1  AGCCCAGTCTTCAGGCTTCTATGCTACTCAAATATGAAGGTATTAGTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTCTTCAGGCTTCTATGCTACTCAAATATGAAGGTATTAGTCTA  944

seq1  CCACTGCGGGATATGTGAGCAAGAAGGAAGAGACAGGTTCTGATTTCTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCGGGATATGTGAGCAAGAAGGAAGAGACAGGTTCTGATTTCTAC  994

seq1  AAGAATTACCTGATTTCAACAGGCTCAGCTTGTGAGACATCAGTACTGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTACCTGATTTCAACAGGCTCAGCTTGTGAGACATCAGTACTGAC  1044

seq1  AATATGAGGATAGAATTC  1066
      ||||||||||||||||||
seq2  AATATGAGGATAGAATTC  1062