BAC Information

Click to search

BAC

Clone NameB6Ng01-031N09
Chromosome13 (Build37)
Map Location 71,102,627 - 71,283,551
singlet/doubletdoublet
Overlap genenone
Upstream geneEG620143, LOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031N09.bB6Ng01-031N09.g
ACCDH861340DH861341
length938138
definitionDH861340|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N09, 5' end.DH861341|Mus musculus domesticus DNA, BAC clone: B6Ng01-031N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,282,614 - 71,283,551)(71,102,627 - 71,102,764)
sequence
gaattcccctgagttccccctgggaggatgcccccctcctcttgggtctc
cggctttgttcttcttggcttttactgagggaaacaggaatttcctcaga
cgagtggagtttgaactcgctcccactggttgtcttctgctttttaatgg
cggaatttcacaaggagctttccagttattcttgtccaaaaagaatggtg
gagattagcatgacttactatgatttcagtccttggaaaaattggaaatt
ttaagaacataatgactaggatccacgttgtcttagacaccagggagaca
ggcttagtgaacagctgggctgcaggtgcccaaggtgtgtctacactggt
ggaaacatcacaccctgactactcagatggctcttggtttgtgatctcac
agacttctgttagtatgttgaaatgggagtttttaatcttgttatgcacc
gagacccagcgctatacttctttgtggattaatttctgtcattttctcct
ttttatgtgatcaagtcacatcttcctctttctctgtgcctttgacagca
tgagatggatggatgtgagccccacaaacagaagtcaaaacaggagcaac
ttactgggagaagggtttaagggagaatgagagacgaaaatgaccaaaat
ttattatttgaatatatgaaattgtcataatgttttttttttaattaaag
tacagttcatgttccattttgagttgtgacctgggtcaggaggagttctt
tcctgagaattttgagataaggtttcatgtagtccatgctggttttaatt
ttctgtgtagtcaggatgaccttgaacgtctaattctctgacctctacct
ccttagtgctcgatagcagcttagtacatagggctataccagaagttata
tgatagggcataatatatgtgtgttcgtgtgggtgtgt
ctcctgaggaggcaggctctgtggtgggaagtggggaagtgagctgagta
gagaaagggaggctcaagggggatattaaaaagatcagaagtttaatgag
gaggaggccgaggaggaggaggaggaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71282614_71283551
seq2: B6Ng01-031N09.b_44_981 (reverse)

seq1  ACACACACACACACACACACATATA-TATG-CCTATCATATAAC-TCTGG  47
      |||||| |||||  ||||||||||| |||| ||||||||||||| |||||
seq2  ACACACCCACACGAACACACATATATTATGCCCTATCATATAACTTCTGG  50

seq1  TATAGCCCTATTGTACTTAGCTGCTATCCGAGCACTAAGGAGGTAGAGGT  97
      |||||||||| |||||| ||||||||| ||||||||||||||||||||||
seq2  TATAGCCCTA-TGTACTAAGCTGCTAT-CGAGCACTAAGGAGGTAGAGGT  98

seq1  CAGAGAATTAGACGTTCAAGGTCATCCTTGACTACACAGAAAATTTAAAA  147
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  CAGAGAATTAGACGTTCAAGGTCATCC-TGACTACACAGAAAA-TTAAAA  146

seq1  CCAGCATGGACTACATGAAACCTTATCTCAAAATTCTCAGGAAAGAACTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGGACTACATGAAACCTTATCTCAAAATTCTCAGGAAAGAACTC  196

seq1  CTCCTGACCCAGGTCACAACTCAAAATGGAACATGAACTGTACTTTAATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACCCAGGTCACAACTCAAAATGGAACATGAACTGTACTTTAATT  246

seq1  -AAAAAAAAACATTATGACAATTTCATATATTCAAATAATAAATTTTGGT  296
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACATTATGACAATTTCATATATTCAAATAATAAATTTTGGT  296

seq1  CATTTTCGTCTCTCATTCTCCCTTAAACCCTTCTCCCAGTAAGTTGCTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCGTCTCTCATTCTCCCTTAAACCCTTCTCCCAGTAAGTTGCTCC  346

seq1  TGTTTTGACTTCTGTTTGTGGGGCTCACATCCATCCATCTCATGCTGTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGACTTCTGTTTGTGGGGCTCACATCCATCCATCTCATGCTGTCA  396

seq1  AAGGCACAGAGAAAGAGGAAGATGTGACTTGATCACATAAAAAGGAGAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGAGAAAGAGGAAGATGTGACTTGATCACATAAAAAGGAGAAA  446

seq1  ATGACAGAAATTAATCCACAAAGAAGTATAGCGCTGGGTCTCGGTGCATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAAATTAATCCACAAAGAAGTATAGCGCTGGGTCTCGGTGCATA  496

seq1  ACAAGATTAAAAACTCCCATTTCAACATACTAACAGAAGTCTGTGAGATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTAAAAACTCCCATTTCAACATACTAACAGAAGTCTGTGAGATC  546

seq1  ACAAACCAAGAGCCATCTGAGTAGTCAGGGTGTGATGTTTCCACCAGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCAAGAGCCATCTGAGTAGTCAGGGTGTGATGTTTCCACCAGTGT  596

seq1  AGACACACCTTGGGCACCTGCAGCCCAGCTGTTCACTAAGCCTGTCTCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCTTGGGCACCTGCAGCCCAGCTGTTCACTAAGCCTGTCTCCC  646

seq1  TGGTGTCTAAGACAACGTGGATCCTAGTCATTATGTTCTTAAAATTTCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTAAGACAACGTGGATCCTAGTCATTATGTTCTTAAAATTTCCA  696

seq1  ATTTTTCCAAGGACTGAAATCATAGTAAGTCATGCTAATCTCCACCATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCAAGGACTGAAATCATAGTAAGTCATGCTAATCTCCACCATTC  746

seq1  TTTTTGGACAAGAATAACTGGAAAGCTCCTTGTGAAATTCCGCCATTAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGACAAGAATAACTGGAAAGCTCCTTGTGAAATTCCGCCATTAAA  796

seq1  AAGCAGAAGACAACCAGTGGGAGCGAGTTCAAACTCCACTCGTCTGAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGACAACCAGTGGGAGCGAGTTCAAACTCCACTCGTCTGAGGA  846

seq1  AATTCCTGTTTCCCTCAGTAAAAGCCAAGAAGAACAAAGCCGGAGACCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGTTTCCCTCAGTAAAAGCCAAGAAGAACAAAGCCGGAGACCCA  896

seq1  AGAGGAGGGGGGCATCCTCCCAGGGGGAACTCAGGGGAATTC  938
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGGGGCATCCTCCCAGGGGGAACTCAGGGGAATTC  938

seq1: chr13_71102627_71102764
seq2: B6Ng01-031N09.g_72_209

seq1  CTCCTGAGGAGGCAGGCTCTGTGGTGGGAAGTGGGGAAGTGAGCTGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGGAGGCAGGCTCTGTGGTGGGAAGTGGGGAAGTGAGCTGAGTA  50

seq1  GAGAAAGGGAGGCTCAAGGGGGATATTAAAAAGATCAGAAGTTTAATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGAGGCTCAAGGGGGATATTAAAAAGATCAGAAGTTTAATGAG  100

seq1  GAGGAGGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGA  138
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGGA  138