BAC Information

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BAC

Clone NameB6Ng01-032D12
Chromosome13 (Build37)
Map Location 50,575,561 - 50,714,489
singlet/doubletdoublet
Overlap geneEG639044
Upstream geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806
Downstream geneGm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032D12.bB6Ng01-032D12.g
ACCDH861619DH861620
length1,0631,020
definitionDH861619|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D12, 5' end.DH861620|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,575,561 - 50,576,629)(50,713,456 - 50,714,489)
sequence
gaattcaaaatacaacctgaaaatgcctatcaccccttatgccatttata
taatatgctattgctgctggtttcatcaatgggtgaagtctagggctgag
gttccttgtagctcagtgctacatagatcaacacacatgaatgtattcac
atcggcataaaatgaaactataactacattccagttgagaactggtactc
catggttggaaatgaccactacttttttctatgagatgtcaatatgctaa
taattttagtaatttactcatttgcttttttttttcctccttgagacagg
atctcactatgtagccctgactggcttggaactcaaaagactcaccagcc
acccacagcatatctagtgctgggattaaaggcttgaggagctagggcca
tccccattaactacagtttgactaaatcactcacatctatccagagacta
aatcattctaagatacacagtctttatctgaaatggttttatttgtttgc
ttgttaaatattgaactgcccctgaagcattttggtcctccatcagccag
ctggccctatcccacccgtgtcttacccagagttggtgcttggctcaagg
ccctccctacaggtagctccagccaaagctgcactgtatgtgagtggcct
cctgacctgaggcctttgtacccaagatcaggggaagttagacgtctaga
gccccagcttattctaccagctgctccagctatgcctgcacgcaaggaaa
cagaccctgcctcaggctgaggacccactccttcacaagccccgccccca
gcacactatccagggtgctgccaagggagccccacccagctcaaacacca
ccccctgcgattttcatatcttggattggcttgtcactgttgtgtattta
ggcccttgcacacactgtgctgctgtctgttatgtgacttcaactcatga
ctctgacactgtatgatctaaacatcattacacgtgtttggttgggtgtc
tgctgagatcatggacccattttaaaaatgatctgtcatctaaattcttt
tgttaggatcctt
gaattcatgtgggtccctgaaagtttgagcaggagttgtctctgattctg
ttgccagcttttggattcccttccctcagctggactgcctggatgagctt
cagtggcacaggatgcactgcttccagttgattgttgaggctggttggta
cccaaggggggtgtctcccctctctgatgagaagaaaagggagtaatggt
tttttttttttttttgtgaggttgggactggaaaaagggactacactcag
gatgtgaagggaataaaaatttaatgggaaaaaaggaatttgaatagcat
tgaaaagagcccatgaattaaaaatgaatttacatgaagttaaaaggccc
tgtgcagaaatagatgcttgcttctcaggcctggaggatcagagatcatg
ccactagtgaaattctctgtggggtcttaacatctagaatatataaacaa
tggtgattactaaatttcaaaattcaaccaataaataaattgactgaaga
atagtttttaaaaggtcatcacagaggatgataattattctactgatact
tcaacattgtcagcttttcaggttaattaaggttcagaatatataaagaa
tacaagaaattagattgaaacacccaaaataactcaaccaaattataagg
ttcagagcataatggagaattctcaacaggaactacttcaatattctttg
ccttcaggtagttaagatgatagcaacactgatataccattttacttaat
gacaatggttcagatcaaaacaaatgagaaattctagcaacaatgaggga
agggacatatcacaagctgctattgggtgtgtaaactggagcagcatgat
ggaaattgatacagagtttccctgagcatagaactacctccatttgctac
tcaatgcaggatgaagctgtatggttcacatacaattgctgagctcaccc
atggagtcccttactaagaactcacaaagaacttctatggaatctgagga
tttgctgcttctgaactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50575561_50576629
seq2: B6Ng01-032D12.b_46_1108

seq1  GAATTCAAAATACAACCTGAAAATGCCTATCACCCCTTATGCCATTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATACAACCTGAAAATGCCTATCACCCCTTATGCCATTTATA  50

seq1  TAATATGCTATTGCTGCTGGTTTCATCAATGGGTGAAGTCTAGGGCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCTATTGCTGCTGGTTTCATCAATGGGTGAAGTCTAGGGCTGAG  100

seq1  GTTCCTTGTAGCTCAGTGCTACATAGATCAACACACATGAATGTATTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGTAGCTCAGTGCTACATAGATCAACACACATGAATGTATTCAC  150

seq1  ATCGGCATAAAATGAAACTATAACTACATTCCAGTTGAGAACTGGTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCATAAAATGAAACTATAACTACATTCCAGTTGAGAACTGGTACTC  200

seq1  CATGGTTGGAAATGACCACTACTTTTTTCTATGAGATGTCAATATGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTGGAAATGACCACTACTTTTTTCTATGAGATGTCAATATGCTAA  250

seq1  TAATTTTAGTAATTTACTCATTTGCTTTTTTTTTTCCTCCTTGAGACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAGTAATTTACTCATTTGCTTTTTTTTTTCCTCCTTGAGACAGG  300

seq1  ATCTCACTATGTAGCCCTGACTGGCTTGGAACTCAAAAGACTCACCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTATGTAGCCCTGACTGGCTTGGAACTCAAAAGACTCACCAGCC  350

seq1  ACCCACAGCATATCTAGTGCTGGGATTAAAGGCTTGAGGAGCTAGGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGCATATCTAGTGCTGGGATTAAAGGCTTGAGGAGCTAGGGCCA  400

seq1  TCCCCATTAACTACAGTTTGACTAAATCACTCACATCTATCCAGAGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTAACTACAGTTTGACTAAATCACTCACATCTATCCAGAGACTA  450

seq1  AATCATTCTAAGATACACAGTCTTTATCTGAAATGGTTTTATTTGTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCTAAGATACACAGTCTTTATCTGAAATGGTTTTATTTGTTTGC  500

seq1  TTGTTAAATATTGAACTGCCCCTGAAGCATTTTGGTCCTCCATCAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAATATTGAACTGCCCCTGAAGCATTTTGGTCCTCCATCAGCCAG  550

seq1  CTGGCCCTATCCCACCCGTGTCTTACCCAGAGTTGGTGCTTGGCTCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTATCCCACCCGTGTCTTACCCAGAGTTGGTGCTTGGCTCAAGG  600

seq1  CCCTCCCTACAGGTAGCTCCAGCCAAAGCTGCACTGTATGTGAGTGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTACAGGTAGCTCCAGCCAAAGCTGCACTGTATGTGAGTGGCCT  650

seq1  CCTGACCTGAGGCCTTTGTACCCAAGATCAGGGGAAGTTAGACGTCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTGAGGCCTTTGTACCCAAGATCAGGGGAAGTTAGACGTCTAGA  700

seq1  GCCCCAGCTTATTCTACCAGCTGCTCCAGCTATGCCTGCACGCAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCTTATTCTACCAGCTGCTCCAGCTATGCCTGCACGCAAGGAAA  750

seq1  CAGACCCTGCCTCAGGCTGAGGACCCACTCCTTCACAAGCCCCGCCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCTGCCTCAGGCTGAGGACCCACTCCTTCACAAGCCCCGCCCCCA  800

seq1  GCACACTATCCAGGGTGCTGCCAAGGGAGCCCCACCCAGCTCAAACACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTATCCAGGGTGCTGCCAAGGGAGCCCCACCCAGCTCAAACACCA  850

seq1  CCCCCTGCGATTTTCATATCTTGGATTGGCTTGTCACTGTTGTGTATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCGATTTTCATATCTTGGATTGGCTTGTCACTGTTGTGTATTTA  900

seq1  GGCCCTTGCACACACTGTGCTGCTGTCTGTTAGTGTGACTTCAACTCATG  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCCCTTGCACACACTGTGCTGCTGTCTGTTA-TGTGACTTCAACTCATG  949

seq1  ACTCCTGACACTGTATGATCTAAAACATCATTACACGTGTTTGGTTGGGT  1000
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACT-CTGACACTGTATGATCT-AAACATCATTACACGTGTTTGGTTGGGT  997

seq1  GTCTGCTGAGATCATTGAACCCATTTTAAAAAATGATCTGTCATCTAAAT  1050
      |||||||||||||| || ||||||||| ||||||||||||||||||||||
seq2  GTCTGCTGAGATCA-TGGACCCATTTT-AAAAATGATCTGTCATCTAAAT  1045

seq1  GTCTTTTGTTAGGATTCTT  1069
       |||||||||||||| |||
seq2  -TCTTTTGTTAGGATCCTT  1063

seq1: chr13_50713456_50714489
seq2: B6Ng01-032D12.g_69_1088 (reverse)

seq1  CTGAGTTCAAGGAAGCAGCAAAATCCTCAGGAATCTCACTAGAAGTTCTT  50
      |||||||||  |||||||| ||||||||||  || ||  |||||||||||
seq2  CTGAGTTCA--GAAGCAGC-AAATCCTCAG--AT-TCCATAGAAGTTCTT  44

seq1  TGGTGAGTTTCTCTGTAAGAGGACTCCATGGGTGAAGCTCAGCAATTGTA  100
      | ||||| ||||  ||||| |||||||||||||| |||||||||||||| 
seq2  T-GTGAG-TTCTTAGTAAG-GGACTCCATGGGTG-AGCTCAGCAATTGT-  89

seq1  ATGTGAACCCATACAAGCTTCATACCTGCAATGAGTAGCAAAATGGAGGT  150
      ||||||| |||||| |||||||| |||||| |||||||| ||||||||||
seq2  ATGTGAA-CCATAC-AGCTTCAT-CCTGCATTGAGTAGC-AAATGGAGGT  135

seq1  AGTTCTATGCTCA-GGAAACTCTGTATCAATTTCCATCATGCTGCTCCAG  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATGCTCAGGGAAACTCTGTATCAATTTCCATCATGCTGCTCCAG  185

seq1  TTTACACACCCAATAGCAGCTTGTGATATGTCCCTTCCCTCATTGTTGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACACCCAATAGCAGCTTGTGATATGTCCCTTCCCTCATTGTTGCT  235

seq1  AGAATTTCTCATTTGTTTTGATCTGAACCATTGTCATTAAGTAAAATGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTCTCATTTGTTTTGATCTGAACCATTGTCATTAAGTAAAATGGT  285

seq1  ATATCAGTGTTGCTATCATCTTAACTACCTGAAGGCAAAGAATATTGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTGTTGCTATCATCTTAACTACCTGAAGGCAAAGAATATTGAAG  335

seq1  TAGTTCCTGTTGAGAATTCTCCATTATGCTCTGAACCTTATAATTTGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTGTTGAGAATTCTCCATTATGCTCTGAACCTTATAATTTGGTT  385

seq1  GAGTTATTTTGGGTGTTTCAATCTAATTTCTTGTATTCTTTATATATTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATTTTGGGTGTTTCAATCTAATTTCTTGTATTCTTTATATATTCT  435

seq1  GAACCTTAATTAACCTGAAAAGCTGACAATGTTGAAGTATCAGTAGAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTAATTAACCTGAAAAGCTGACAATGTTGAAGTATCAGTAGAATA  485

seq1  ATTATCATCCTCTGTGATGACCTTTTAAAAACTATTCTTCAGTCAATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCCTCTGTGATGACCTTTTAAAAACTATTCTTCAGTCAATTTA  535

seq1  TTTATTGGTTGAATTTTGAAATTTAGTAATCACCATTGTTTATATATTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGTTGAATTTTGAAATTTAGTAATCACCATTGTTTATATATTCT  585

seq1  AGATGTTAAGACCCCACAGAGAATTTCACTAGTGGCATGATCTCTGATCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAAGACCCCACAGAGAATTTCACTAGTGGCATGATCTCTGATCC  635

seq1  TCCAGGCCTGAGAAGCAAGCATCTATTTCTGCACAGGGCCTTTTAACTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCCTGAGAAGCAAGCATCTATTTCTGCACAGGGCCTTTTAACTTC  685

seq1  ATGTAAATTCATTTTTAATTCATGGGCTCTTTTCAATGCTATTCAAATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATTCATTTTTAATTCATGGGCTCTTTTCAATGCTATTCAAATTC  735

seq1  CTTTTTTCCCATTAAATTTTTATTCCCTTCACATCCTGAGTGTAGTCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCCATTAAATTTTTATTCCCTTCACATCCTGAGTGTAGTCCCT  785

seq1  TTTTCCAGTCCCAACCTCACAAAAAAAAAAAAAAAACCATTACTCCCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGTCCCAACCTCACAAAAAAAAAAAAAAAACCATTACTCCCTTT  835

seq1  TCTTCTCATCAGAGAGGGGAGACACCCCCCTTGGGTACCAACCAGCCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATCAGAGAGGGGAGACACCCCCCTTGGGTACCAACCAGCCTCA  885

seq1  ACAATCAACTGGAAGCAGTGCATCCTGTGCCACTGAAGCTCATCCAGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAACTGGAAGCAGTGCATCCTGTGCCACTGAAGCTCATCCAGGCA  935

seq1  GTCCAGCTGAGGGAAGGGAATCCAAAAGCTGGCAACAGAATCAGAGACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTGAGGGAAGGGAATCCAAAAGCTGGCAACAGAATCAGAGACAA  985

seq1  CTCCTGCTCAAACTTTCAGGGACCCACATGAATTC  1034
      |||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTCAAACTTTCAGGGACCCACATGAATTC  1020