BAC Information

Click to search

BAC

Clone NameB6Ng01-032E01
Chromosome13 (Build37)
Map Location 27,423,671 - 27,424,796
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1
Downstream genePrl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032E01.bB6Ng01-032E01.g
ACCDH861643DH861644
length8091,113
definitionDH861643|Mus musculus domesticus DNA, BAC clone: B6Ng01-032E01, 5' end.DH861644|Mus musculus domesticus DNA, BAC clone: B6Ng01-032E01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagaagaatgaatagaaataaacagcagtatggattggggaatg
tgggggaaccactagaaacttccagatgccagggatgcaaggggctccca
ggattcaatggggttgacattatatggaattacaaacagagaggagtttg
aatcttaagagattacctccagtaatagacatggcctccactggagggat
ggggttacccagccatctcaaaaattttaacccagaattgttcctgtata
atacaaatgcaaggaataaaaaacagagcagcgactgaaggaaaggccat
tcagagactgccccactttgggattcatcccatttaaagacaccaaactc
tgacactattgctaatgacaatgttgatgacagttgcttgttatggctgt
gctctgagaggttctgccaccacctgactaagacagatgcagatactcac
tgccaaccattgaaatgtgccccgtggaatggaaaagttagagaagtaat
gaagaagctgaaggggattgccaccccataggaagaacaacaatatcaac
ttactgaacaccacagagctaacagcaagtaagccatcacccaccaaaga
gtatatggtgggtatgtggctcctaatacatatgtatcagaggactgcct
tttctggcatcattgggagagtaggcccttggtcttgtggaggcttattt
ccccaataaaagggaatgctgaatgggtgacccaggattgtgtggatgga
tgaggggtgtaccttcttagagtcaaaggtgagaggtgatgggattttgg
ctttttgtg
gaattccaaacaaatgccttaaaagaaaaatttaaaccttctagaacaac
cacttatttcttgcttgtatgaggccagaactactgacatctttactaag
gatctgcaattatttaatgaagaagttcatgaattcatttatgattaact
ttggaaggtataattttaattattcactaataatagaaagagttgtataa
tttattaatacgtacttaaaggaaacaacagttttaagcaagagaaaaca
agagggtaataagtacagacacatatttattgaagctttaattcaaatcc
cagattgaaatgaactttaaaatatcaatacttttgctattttatgattt
gcagaacttcacttcaatatataaatttaatgaagggtaagaatgcacag
agggtactgcacagagcttatatgcttagatgaataataataataataaa
tcacctgaaatattagctcagttgagaaatgagtagggagatagtcattt
tatttcttaatttcaggtttttgtatcactcacttttaaagttacatatt
tattaaatacattattagcattctcatcatggagtcacttattgaacttc
acgtaaccctgtttctattttaacattcgcacatttaaattactcagaca
acaagagctcctagtcaagactttcaacagctgccaacattttttcttaa
caccccagaaacaaaagagaaagccaaaaagatttcagtgtgtcctcagt
cattggacttattctaaagggtagcacccattccgtaagtcattatgagt
actgtacggtgttataatcacatcttcaaggaaatgctgaaagagtgaac
aatgaaacaaaatcaagttatacagttgatgaattataagaaataaaact
aaagcattttgtaactgagtgtaaattgagaagtaggggagcctagtcta
gcaatttgtgtataccatgttttatttactattctgtaggagctgacatg
aataggactctatttaaatattaattcatttattcgaagaagaatggaaa
tttagttggatttattatatatgctatttccctcgttggcaacctttaag
gtgctgacactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27423671_27424796
seq2: B6Ng01-032E01.g_63_1175

seq1  GAATTCCAAACAAATGCCTTAAAAGAAAAATTTAAACCTTCTAGAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAAATGCCTTAAAAGAAAAATTTAAACCTTCTAGAACAAC  50

seq1  CACTTATTTCTTGCTTGTATGAGGCCAGAACTACTGACATCTTTACTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTTCTTGCTTGTATGAGGCCAGAACTACTGACATCTTTACTAAG  100

seq1  GATCTGCAATTATTTAATGAAGAAGTTCATGAATTCATTTATGATTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAATTATTTAATGAAGAAGTTCATGAATTCATTTATGATTAACT  150

seq1  TTGGAAGGTATAATTTTAATTATTCACTAATAATAGAAAGAGTTGTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGTATAATTTTAATTATTCACTAATAATAGAAAGAGTTGTATAA  200

seq1  TTTATTAATACGTACTTAAAGGAAACAACAGTTTTAAGCAAGAGAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATACGTACTTAAAGGAAACAACAGTTTTAAGCAAGAGAAAACA  250

seq1  AGAGGGTAATAAGTACAGACACATATTTATTGAAGCTTTAATTCAAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTAATAAGTACAGACACATATTTATTGAAGCTTTAATTCAAATCC  300

seq1  CAGATTGAAATGAACTTTAAAATATCAATACTTTTGCTATTTTATGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGAAATGAACTTTAAAATATCAATACTTTTGCTATTTTATGATTT  350

seq1  GCAGAACTTCACTTCAATATATAAATTTAATGAAGGGTAAGAATGCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACTTCACTTCAATATATAAATTTAATGAAGGGTAAGAATGCACAG  400

seq1  AGGGTACTGCACAGAGCTTATATGCTTAGATGAATAATAATAATAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACTGCACAGAGCTTATATGCTTAGATGAATAATAATAATAATAAA  450

seq1  TCACCTGAAATATTAGCTCAGTTGAGAAATGAGTAGGGAGATAGTCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAAATATTAGCTCAGTTGAGAAATGAGTAGGGAGATAGTCATTT  500

seq1  TATTTCTTAATTTCAGGTTTTTGTATCACTCACTTTTAAAGTTACATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAATTTCAGGTTTTTGTATCACTCACTTTTAAAGTTACATATT  550

seq1  TATTAAATACATTATTAGCATTCTCATCATGGAGTCACTTATTGAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATACATTATTAGCATTCTCATCATGGAGTCACTTATTGAACTTC  600

seq1  ACGTAACCCTGTTTCTATTTTAACATTCGCACATTTAAATTACTCAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAACCCTGTTTCTATTTTAACATTCGCACATTTAAATTACTCAGACA  650

seq1  ACAAGAGCTCCTAGTCAAGACTTTCAACAGCTGCCAACATTTTTTCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCTCCTAGTCAAGACTTTCAACAGCTGCCAACATTTTTTCTTAA  700

seq1  CACCCCAGAAACAAAAGAGAAAGCCAAAAAGATTTCAGTGTGTCCTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGAAACAAAAGAGAAAGCCAAAAAGATTTCAGTGTGTCCTCAGT  750

seq1  CATTGGACTTATTCTAAAGGGTAGCACCCATTCCGTAAGTCATTATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGACTTATTCTAAAGGGTAGCACCCATTCCGTAAGTCATTATGAGT  800

seq1  ACTGTACGGTGTTATAATCACATCTTCAAGGAAATGCTGAAAGAGTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACGGTGTTATAATCACATCTTCAAGGAAATGCTGAAAGAGTGAAC  850

seq1  AATGAAACAAAATCAAGTTATACAGTTGATGAATTATAAGAAAATAAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  AATGAAACAAAATCAAGTTATACAGTTGATGAATTATAAGAAA--TAAAA  898

seq1  CTAAAGCAATTTTGTAACTGAGTTGTAAATTGAGAAGTTAGAGGAGCCTA  950
      ||||||| |||||||||||||| |||||||||||||| ||| ||||||||
seq2  CTAAAGC-ATTTTGTAACTGAG-TGTAAATTGAGAAG-TAGGGGAGCCTA  945

seq1  GTCTAGCAATTTGTGTATACCATGTTTTATTTACTATTCTGTAGGAAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCTAGCAATTTGTGTATACCATGTTTTATTTACTATTCTGTAGG-AGCT  994

seq1  GACATGAATTAGGACTCTAATTTAAATATATATTCATTTATACAGAGAAG  1050
      |||||||| ||||||||| ||||||||||  |||||||||| |  |||||
seq2  GACATGAA-TAGGACTCT-ATTTAAATATTAATTCATTTATTCGAAGAAG  1042

seq1  AATGAAAATTTAGTTGTATTTATTATATATTGCTAATTGCACCTCGTTGG  1100
      |||| ||||||||||| |||||||||||| ||||| ||   |||||||||
seq2  AATGGAAATTTAGTTGGATTTATTATATA-TGCTATTT--CCCTCGTTGG  1089

seq1  CAACCTTTTATGCTGCTGACCACTAA  1126
      ||||| |||| | |||||| ||||||
seq2  CAACC-TTTAAGGTGCTGA-CACTAA  1113