BAC Information

Click to search

BAC

Clone NameB6Ng01-032N21
Chromosome12 (Build37)13 (Build37)
Map Location 32,631,608 - 32,631,84335,554,570 - 35,555,611
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032N21.bB6Ng01-032N21.g
ACCDH862080DH862081
length7481,042
definitionDH862080|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N21, 5' end.DH862081|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,608 - 32,631,843)(35,554,570 - 35,555,611)
sequence
gaattcagcttctgtgtgctgactctcaggaaatatttcccagaagattt
cacctcagtgatgctgatctcttcttaatcacagctaattcttcagcgcc
agctgatcagcatccattgttccaccaaatcaaaaatttactttagtggt
tcgttgtttagctctgagccccattttctagtggggttatttgattttct
ggagtccaccttcttagaatacccaagatacaagatacaatttgcaaaac
acatgaaactcaagaagaacaaacaccaaagtatggacactttgcccctt
cttagaattgggaacaaaccagccatggaaggagttacagagacaaagtt
tggagctgagatgaaaggatggatcatctagagactgccatacccgggga
tccatcccataatcagcctccattgcatacaccagcaagattttgctgaa
aggactctgatatagctgtctcttgtgaggctatgctggggcctggcaaa
caccaaagtggatgctaacagtcagttattggatggaacacagggccccc
aatggagaagctagagaaagttcccaaggagctgaaggggtctgcaaccc
tataggtagaacaacaatatgaactaaccagtacccccagagctcgtgtc
tctagctgcatatgtatcagaagaagatggcctagtcagtcatcaatggg
aagagaggccccttggtcttgccagggccaagaagtgggagcaggggg
gaattctcaaaaggcagggcagtttctctgcctctcttctctctttaaag
aaggcagcagatggttctgacgaggttgaggtccttacacatggttagtc
ttggagtctggcctacatttatcactatgaatgaactgggtcagtctcct
cttgcccctactttgcttggctttccttgagctcaatactgcatttagag
ggcttgctcttctagatgccctggattctgagaaagaaaacagccagaga
gatggaggcatttcagaccggactcaggggagttgtgggaagattgcatc
acatggactagaagttaaggcacagagtggaaggatattgcatcatcccc
aatggccaattgaagtctgtatccactgacctacaacccctgtcatctga
aagtggcctaattagctagccaatcaatatgacattgcaatttaagattt
cttgccaatgtattgtctctgcaaacagctattgaggaaattacccattg
agcagcaaattctccttgcttgctttatggaatttggttcagatgccctg
atctgttgtatcccagctgtgattctctgtttcccaaatagatgctactt
cctttgactttgtgccatttttttttcttctcaaggtttaggtgtcttga
cctttcgattattgagaaaggaagaactagaaagagaaaaagcttaccac
tgcctctgtccccttcaagctaagctggaaggaacatgttccagtttgac
tttgcttccctgacaggcagcttggcttttcttctctgttctgtcctttc
ttacattttgtttttgagccagagtctcactgtgcagtctaggctggatt
caaactttcatcccttacacctcagtcttctacatgctgccattacaaat
gtatgctactgtgcttgccatttaatagaaatgagctattttctatttga
ggtgctggggatggaagtcatagccctgcccatgatctaactgctgagca
caccctcagccataaccacaactcttttgtttccctttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631608_32631843
seq2: B6Ng01-032N21.b_544_796 (reverse)

seq1  CCCCCTCCCTCCCACTTCTTGGCCCTGGCAAGACCCATGGGCCTCTCTTT  50
      ||||||  ||||||||||||||||||||||||||| | ||||||||||| 
seq2  CCCCCT-GCTCCCACTTCTTGGCCCTGGCAAGACCAAGGGGCCTCTCTTC  49

seq1  CCACTGA-------------------CTTCTGATACATACGCAGCTAGAG  81
      ||| |||                   ||||||||||||| ||||||||||
seq2  CCATTGATGACTGACTAGGCCATCTTCTTCTGATACATATGCAGCTAGAG  99

seq1  ACACGAGCTCCGGGGGTACTGGTCAGTTCATAATGTTGTTCCACCTATAG  131
      |||||||||| |||||||||||| |||||||| |||||||| ||||||||
seq2  ACACGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCTACCTATAG  149

seq1  GGTTGCAGACCCCTTTAGCTCCTTGGGTACTTTCTCTAACTCCTCCATTG  181
      ||||||||||||||| ||||||||||| |||||||||| || ||||||||
seq2  GGTTGCAGACCCCTTCAGCTCCTTGGGAACTTTCTCTAGCTTCTCCATTG  199

seq1  GGGACCCTGTGATCCTATCCAATAGCTGACTGTGAGCATCCACTTCTGTG  231
      ||| ||||||| ||| |||||||| |||||||| |||||||||||  |||
seq2  GGGGCCCTGTGTTCC-ATCCAATAACTGACTGTTAGCATCCACTTTGGTG  248

seq1  TTTGC  236
      |||||
seq2  TTTGC  253

seq1: chr13_35554570_35555611
seq2: B6Ng01-032N21.g_68_1109 (reverse)

seq1  TCAGAAAGGGAAAC-AAAGAGTTTGTGGTATTGGCTGAGGGTGTAGCTCA  49
      |||||||||||||| |||||| |||||||  ||||||||||||| |||||
seq2  TCAGAAAGGGAAACAAAAGAG-TTGTGGTTATGGCTGAGGGTGT-GCTCA  48

seq1  GCAG-TAGATCATGTGCAAGGCTATGACTTCCATCCCCAGCACCTCAAAT  98
      |||| ||||||||| ||| |||||||||||||||||||||||||||||||
seq2  GCAGTTAGATCATGGGCAGGGCTATGACTTCCATCCCCAGCACCTCAAAT  98

seq1  AGAAAATAGCTCATTTCTATTAAATGGCAAGCACAGTAGCATACATTTGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAGCTCATTTCTATTAAATGGCAAGCACAGTAGCATACATTTGT  148

seq1  AATGGCAGCATGTAGAAGACTGAGGTGTAAGGGATGAAAGTTTGAATCCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAGCATGTAGAAGACTGAGGTGTAAGGGATGAAAGTTTGAATCCA  198

seq1  GCCTAGACTGCACAGTGAGACTCTGGCTCAAAAACAAAATGTAAGAAAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGACTGCACAGTGAGACTCTGGCTCAAAAACAAAATGTAAGAAAGG  248

seq1  ACAGAACAGAGAAGAAAAGCCAAGCTGCCTGTCAGGGAAGCAAAGTCAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAGAGAAGAAAAGCCAAGCTGCCTGTCAGGGAAGCAAAGTCAAA  298

seq1  CTGGAACATGTTCCTTCCAGCTTAGCTTGAAGGGGACAGAGGCAGTGGTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACATGTTCCTTCCAGCTTAGCTTGAAGGGGACAGAGGCAGTGGTA  348

seq1  AGCTTTTTCTCTTTCTAGTTCTTCCTTTCTCAATAATCGAAAGGTCAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTCTCTTTCTAGTTCTTCCTTTCTCAATAATCGAAAGGTCAAGA  398

seq1  CACCTAAACCTTGAGAAGAAAAAAAAATGGCACAAAGTCAAAGGAAGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAACCTTGAGAAGAAAAAAAAATGGCACAAAGTCAAAGGAAGTAG  448

seq1  CATCTATTTGGGAAACAGAGAATCACAGCTGGGATACAACAGATCAGGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTTGGGAAACAGAGAATCACAGCTGGGATACAACAGATCAGGGC  498

seq1  ATCTGAACCAAATTCCATAAAGCAAGCAAGGAGAATTTGCTGCTCAATGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACCAAATTCCATAAAGCAAGCAAGGAGAATTTGCTGCTCAATGG  548

seq1  GTAATTTCCTCAATAGCTGTTTGCAGAGACAATACATTGGCAAGAAATCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTCCTCAATAGCTGTTTGCAGAGACAATACATTGGCAAGAAATCT  598

seq1  TAAATTGCAATGTCATATTGATTGGCTAGCTAATTAGGCCACTTTCAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGCAATGTCATATTGATTGGCTAGCTAATTAGGCCACTTTCAGAT  648

seq1  GACAGGGGTTGTAGGTCAGTGGATACAGACTTCAATTGGCCATTGGGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGGTTGTAGGTCAGTGGATACAGACTTCAATTGGCCATTGGGGAT  698

seq1  GATGCAATATCCTTCCACTCTGTGCCTTAACTTCTAGTCCATGTGATGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAATATCCTTCCACTCTGTGCCTTAACTTCTAGTCCATGTGATGCA  748

seq1  ATCTTCCCACAACTCCCCTGAGTCCGGTCTGAAATGCCTCCATCTCTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCACAACTCCCCTGAGTCCGGTCTGAAATGCCTCCATCTCTCTG  798

seq1  GCTGTTTTCTTTCTCAGAATCCAGGGCATCTAGAAGAGCAAGCCCTCTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCTTTCTCAGAATCCAGGGCATCTAGAAGAGCAAGCCCTCTAA  848

seq1  ATGCAGTATTGAGCTCAAGGAAAGCCAAGCAAAGTAGGGGCAAGAGGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTATTGAGCTCAAGGAAAGCCAAGCAAAGTAGGGGCAAGAGGAGA  898

seq1  CTGACCCAGTTCATTCATAGTGATAAATGTAGGCCAGACTCCAAGACTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCAGTTCATTCATAGTGATAAATGTAGGCCAGACTCCAAGACTAA  948

seq1  CCATGTGTAAGGACCTCAACCTCGTCAGAACCATCTGCTGCCTTCTTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTAAGGACCTCAACCTCGTCAGAACCATCTGCTGCCTTCTTTAA  998

seq1  AGAGAGAAGAGAGGCAGAGAAACTGCCCTGCCTTTTGAGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGAGAGGCAGAGAAACTGCCCTGCCTTTTGAGAATTC  1042