BAC Information

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BAC

Clone NameB6Ng01-032O21
Chromosome13 (Build37)13 (Build37)
Map Location 13,008,196 - 13,009,04613,179,135 - 13,179,839
singlet/doubletsingletsinglet
Overlap geneLOC100039754
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999
Downstream genePrl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032O21.bB6Ng01-032O21.g
ACCDH862126DH862127
length920952
definitionDH862126|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O21, 5' end.DH862127|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,008,196 - 13,009,046)(13,179,135 - 13,179,839)
sequence
gaattctttaaccatgaatttgaaaatttgcaggaatcattataggccta
atgatgaaaatattttcacaatgatgcgtattaatgaattttgcacttgt
cagacaagactgagaactgtgtttgctgacaaggagttgataaggaatgc
tcaatagaacatggagtcaaacatgacatttactctcttttcaaataaca
tgagtaaagattgttgataatgaccagcttatcactggaaacattcaagg
gtcattcaaatcatggatcaataaaatttatcattagaaaaaataatcaa
aaaaacaaatcgcatgattgacttgagatgtattaaatgttccttagaaa
atgttcacaccaaggtatttaacattacttatgactattatgaagggtgt
tgttttccaaattttattctcagcctgtttatcctttgtgtagagaaagg
ccactggtttgtttgagataattttatatccagctacttcactgaagttg
tttatcaggtttaggagttctctggtggaatttttggggtccaaaaatat
actatcatatatactgcaaaccatatactatcatatcgtctgcaaatagt
gatattttgaatttttcctttccagtttgtatcgctttgatctccttttg
ctgtctaattgctctggctaggacttcaagtactatattgaatagagagg
tagagagtgggcagccctgtctagtccctgattttagtggaattgcttcc
agcttctctccatttactttgatgttggtttgctgtatattgcttttact
atgtttaggtatgggccttgaattcttgatctttccaagatttttatcat
gaatgggtgtgggattttgtcaaatggtttctcagcagctaatgagatga
tcatgtgggttttgtcttga
gaattctgttctgacctttggactttgggacttttttttccagttgagag
atatttaattatttaaaaattaagtaattaaatatttctttttcacttaa
tgttatattttcaattattaacttcaactggatttggattttaataggtt
gtgcatatggaaaattttatctatgcttgtttttattttctttggttttt
gttttaatttcagtatattttaaccttagtttcctcaccctccactcgcc
acagcaactcctccactctcccaaaggccctctcctcttccatctatctt
tagaaaaaaaaagcaggcacttgaagggtttcagccaaacatggcataaa
aagttacaacaagacatgatataaaccctcacatcaaggcagggcaaggc
agcatagtaagaggaaaatgatccccagaggagacaatataacatcagat
acgctcacattcccactgttaagagtccaatagaaatacaaagctaataa
ccctaacatagagagagaatatctagagcaaacccatgcatactctgtga
tagttgcttcagtctctgtgagccactatgaacactgctacactggtttt
gttagctgttttctcctggtgttaatttggttagatataactttaaagta
tgtgtctataattctctgaatgtccttaatgcttgctttactctctcctt
ttcatctctaattttattaatttgcaatctcactaattttttgggtcaaa
tgtgctaatggtttttcaatgttattaaacttttcaaaacacctgagata
tatattatatatatagcaatcaacttgtttttgttcctttgttcgttgct
ttactttttattggatattttcttatttatatttcaattttatcctcttt
cccagtttcccccactcccgaaaataccctagccattccgcctcccccgc
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13008196_13009046
seq2: B6Ng01-032O21.b_47_897

seq1  GAATTCTTTAACCATGAATTTGAAAATTTGCAGGAATCATTATAGGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACCATGAATTTGAAAATTTGCAGGAATCATTATAGGCCTA  50

seq1  ATGATGAAAATATTTTCACAATGATGCGTATTAATGAATTTTGCACTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAAATATTTTCACAATGATGCGTATTAATGAATTTTGCACTTGT  100

seq1  CAGACAAGACTGAGAACTGTGTTTGCTGACAAGGAGTTGATAAGGAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGACTGAGAACTGTGTTTGCTGACAAGGAGTTGATAAGGAATGC  150

seq1  TCAATAGAACATGGAGTCAAACATGACATTTACTCTCTTTTCAAATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAACATGGAGTCAAACATGACATTTACTCTCTTTTCAAATAACA  200

seq1  TGAGTAAAGATTGTTGATAATGACCAGCTTATCACTGGAAACATTCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAAGATTGTTGATAATGACCAGCTTATCACTGGAAACATTCAAGG  250

seq1  GTCATTCAAATCATGGATCAATAAAATTTATCATTAGAAAAAATAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCAAATCATGGATCAATAAAATTTATCATTAGAAAAAATAATCAA  300

seq1  AAAAACAAATCGCATGATTGACTTGAGATGTATTAAATGTTCCTTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATCGCATGATTGACTTGAGATGTATTAAATGTTCCTTAGAAA  350

seq1  ATGTTCACACCAAGGTATTTAACATTACTTATGACTATTATGAAGGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACACCAAGGTATTTAACATTACTTATGACTATTATGAAGGGTGT  400

seq1  TGTTTTCCAAATTTTATTCTCAGCCTGTTTATCCTTTGTGTAGAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCAAATTTTATTCTCAGCCTGTTTATCCTTTGTGTAGAGAAAGG  450

seq1  CCACTGGTTTGTTTGAGATAATTTTATATCCAGCTACTTCACTGAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGTTTGTTTGAGATAATTTTATATCCAGCTACTTCACTGAAGTTG  500

seq1  TTTATCAGGTTTAGGAGTTCTCTGGTGGAATTTTTGGGGTCCAAAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGGTTTAGGAGTTCTCTGGTGGAATTTTTGGGGTCCAAAAATAT  550

seq1  ACTATCATATATACTGCAAACCATATACTATCATATCGTCTGCAAATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCATATATACTGCAAACCATATACTATCATATCGTCTGCAAATAGT  600

seq1  GATATTTTGAATTTTTCCTTTCCAGTTTGTATCGCTTTGATCTCCTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTGAATTTTTCCTTTCCAGTTTGTATCGCTTTGATCTCCTTTTG  650

seq1  CTGTCTAATTGCTCTGGCTAGGACTTCAAGTACTATATTGAATAGAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAATTGCTCTGGCTAGGACTTCAAGTACTATATTGAATAGAGAGG  700

seq1  TAGAGAGTGGGCAGCCCTGTCTAGTCCCTGATTTTAGTGGAATTGCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTGGGCAGCCCTGTCTAGTCCCTGATTTTAGTGGAATTGCTTCC  750

seq1  AGCTTCTCTCCATTTACTTTGATGTTGGTTTGCTGTATATTGCTTTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTCCATTTACTTTGATGTTGGTTTGCTGTATATTGCTTTTACT  800

seq1  ATGTTTAGGTATGGGCCTTGAATTCTTGATCTTTCCAAGATTTTTATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGGTATGGGCCTTGAATTCTTGATCTTTCCAAGATTTTTATCAT  850

seq1  G  851
      |
seq2  G  851

seq1: chr13_13179135_13179839
seq2: B6Ng01-032O21.g_70_776

seq1  GAATTCTGTCCTGACCTTTGGATTTTGGGACTTTTTTTTCCAGTTGAGAG  50
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  GAATTCTGTTCTGACCTTTGGACTTTGGGACTTTTTTTTCCAGTTGAGAG  50

seq1  GTATATAATTACTTAAAAATTAAGTAATTAAATATTTCTTTCTCGCTTAA  100
       ||| |||||| ||||||||||||||||||||||||||||| || |||||
seq2  ATATTTAATTATTTAAAAATTAAGTAATTAAATATTTCTTTTTCACTTAA  100

seq1  TGTTATATTTTCAATTATTAACTTCAACTGGATTTGGATTTTAATAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATTTTCAATTATTAACTTCAACTGGATTTGGATTTTAATAGGTT  150

seq1  GTGCATATGGAAAATTTTATCTATGCTTGTTTTTATTTTCTTTGGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGCATATGGAAAATTTTATCTATGCTTGTTTTTATTTTCTTTGGTTTTT  200

seq1  GTTTTAATTTCAGTATATTCCAACCTTAGTTTCCTCACCCTCCACTCGCC  250
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  GTTTTAATTTCAGTATATTTTAACCTTAGTTTCCTCACCCTCCACTCGCC  250

seq1  ACAGCAACCCCTTCACTCTCCCAAAGGCCCTCTCCTCTTCCATCTATCTT  300
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTCCTCCACTCTCCCAAAGGCCCTCTCCTCTTCCATCTATCTT  300

seq1  TAG-AAAAAAAAGCAGGCACTTGAAGGATATCAGTCAAACATGGCATAAA  349
      ||| ||||||||||||||||||||||| | |||| |||||||||||||||
seq2  TAGAAAAAAAAAGCAGGCACTTGAAGGGTTTCAGCCAAACATGGCATAAA  350

seq1  AAGTTACAACCAGACTAGATACAAACCCTCACATCAAGG-TGGGCAAGGC  398
      |||||||||| ||||  |||| |||||||||||||||||  |||||||||
seq2  AAGTTACAACAAGACATGATATAAACCCTCACATCAAGGCAGGGCAAGGC  400

seq1  AGCATAGTAAGAGGAAAATGATCCCCAGAGGAGACAATATAACATCAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGTAAGAGGAAAATGATCCCCAGAGGAGACAATATAACATCAGAT  450

seq1  ATGCTCACATTCCTACTGTTAAGAGTCCAATAGAAATACAAAGCTAATAA  498
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACGCTCACATTCCCACTGTTAAGAGTCCAATAGAAATACAAAGCTAATAA  500

seq1  CCCTAACATAGAGAGAGAACATCTAGAGCAAACCCATGCATACTCTGTGA  548
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCTAACATAGAGAGAGAATATCTAGAGCAAACCCATGCATACTCTGTGA  550

seq1  TAGTTGCCTCAGTCTCTGTGAGCCACTATAAACACTGCTACACTGGTTTT  598
      ||||||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGTTGCTTCAGTCTCTGTGAGCCACTATGAACACTGCTACACTGGTTTT  600

seq1  GTTAGCTGTGTTCTCCTGGTTTTAATTTGGTTAGATATAACTTTAAAGTA  648
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GTTAGCTGTTTTCTCCTGGTGTTAATTTGGTTAGATATAACTTTAAAGTA  650

seq1  TGTGTCTATAATTCTCTGAATGTCCTTAATGCTTGCTTTACTATCTCCTT  698
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTCTATAATTCTCTGAATGTCCTTAATGCTTGCTTTACTCTCTCCTT  700

seq1  TTCATCT  705
      |||||||
seq2  TTCATCT  707