BAC Information

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BAC

Clone NameB6Ng01-034B07
Chromosome13 (Build37)
Map Location 115,441,803 - 115,543,976
singlet/doubletdoublet
Overlap genenone
Upstream geneHspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik
Downstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034B07.bB6Ng01-034B07.g
ACCDH862946DH862947
length6491,122
definitionDH862946|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B07, 5' end.DH862947|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,543,329 - 115,543,976)(115,441,803 - 115,442,920)
sequence
gaattcatcacggtagattcttaagacatctcaagaataataagcaacta
ccttccacttctacatttccactaaatctgtatgtttactatattattgt
agaatttgctatattataagtctgtggtgtgggggaagtgggtgagttca
caaaagggcaaaaatcttcaaattatcttaacagaaatataatctaaata
atgttatgcaaaatgtataagtcaagttaataatgtaaaatgtcctccct
ttttggtaaattttgctaaacatttaagaaggaaataatacttattttag
aaaaagtatttcataacataaaaagggaaaccttcctatgttttgtgagg
ccaatgttactctgataacaaaagcttaacatcctccatgtacatataaa
caaaaattctgcaaaatattagcaaaccaagtcttactatatatagtatg
attaaaacaaagtttatttcaggaacataagattgcttaagttttataaa
aatcaatattattcacaatatctgtgttcttttaaaaatttttgttttta
aatgagtgtgtatgttttgtgtgcatgtataaatgaatgtgagtaccagt
ggaagccagaagagagtgcctgaatcctggcactggagttacaggaagt
gaattcattgcctgtgcactcaccagagatgacgataatgcgagaatagc
tggggcataaaaccacagtcaattgacagaaccgtctagcatacagtggg
tcagacgcagaggtgctgctgtgtgatctttacagaaccaataacatctt
gtgagctgaacagcagatcaccgactgaggggctggacgataaaatcaca
tctttgtcattagctgtgctgaaatccacaactgcttacctgctttcttg
tatatgtaaatgaacatggactcagagacctactatgtcattgcaaactg
tttcggggccaagattaaggcaaaaactacagtgtccactcttttgcatg
attctgccacttgaattttggataagagacatttcagtgaccacatatga
gcagtagctacatggttagcacatgtctccatcttgaatgcagtattgag
gtatgccttgtatttgaagtacacacacacacacacacacacacacacac
acacacacacatacgtgtgttatgagcgtgttattgaggacagaatgcat
atatataatgtcttattttcttttcacaattcacagtacagaataggcac
tcaataagtgcgttgaaaaaatgagtataataccatagaaacaaatggat
aatgacaatctctgaggatccaggttaactgtttttcacttttatttttt
taaatctgaaacagcttacttacttgaccctagtgaaattctacttgtag
tcttattttttaataaatggattaatttattttttcaattttttattaga
tattttcttcaattgcatttcaaatgctatgacgaaagtcccctctaccc
tccccctgccctgctcccctacacacccactcccacttcttggccctggt
gttcccctgtattggggcatataaagttgcaagaccaagggccttcttcc
catcatggctgactaggcatcttgtgctacatattgcatctagagacacg
agctctggaggtactggttagttcatattgttgtccatgtaatagggtgc
agaccccttcagcttccttaagataactttcctctagcctccttccattg
ggggcctgtgtttcaatccaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115543329_115543976
seq2: B6Ng01-034B07.b_46_694 (reverse)

seq1  ACTTCCTGTAACTCCAGTGCCAGGATTCAGGCACTCTCTTCTGGCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTAACTCCAGTGCCAGGATTCAGGCACTCTCTTCTGGCTTCCA  50

seq1  CTGGTACTCACATTCATTTATACATGCACAC-AAACATACACACTCATTT  99
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGTACTCACATTCATTTATACATGCACACAAAACATACACACTCATTT  100

seq1  AAAAACAAATATTTTTAAAAGAACACAGATATTGTGAATAATATTGATTT  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAATTTTTAAAAGAACACAGATATTGTGAATAATATTGATTT  150

seq1  TTATAAAACTTAAGCAATCTTATGTTCCTGAAATAAACTTTGTTTTAATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACTTAAGCAATCTTATGTTCCTGAAATAAACTTTGTTTTAATC  200

seq1  ATACTATATATAGTAAGACTTGGTTTGCTAATATTTTGCAGAATTTTTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATATATAGTAAGACTTGGTTTGCTAATATTTTGCAGAATTTTTGT  250

seq1  TTATATGTACATGGAGGATGTTAAGCTTTTGTTATCAGAGTAACATTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTACATGGAGGATGTTAAGCTTTTGTTATCAGAGTAACATTGGC  300

seq1  CTCACAAAACATAGGAAGGTTTCCCTTTTTATGTTATGAAATACTTTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAACATAGGAAGGTTTCCCTTTTTATGTTATGAAATACTTTTTC  350

seq1  TAAAATAAGTATTATTTCCTTCTTAAATGTTTAGCAAAATTTACCAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGTATTATTTCCTTCTTAAATGTTTAGCAAAATTTACCAAAAA  400

seq1  GGGAGGACATTTTACATTATTAACTTGACTTATACATTTTGCATAACATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGACATTTTACATTATTAACTTGACTTATACATTTTGCATAACATT  450

seq1  ATTTAGATTATATTTCTGTTAAGATAATTTGAAGATTTTTGCCCTTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATTATATTTCTGTTAAGATAATTTGAAGATTTTTGCCCTTTTGT  500

seq1  GAACTCACCCACTTCCCCCACACCACAGACTTATAATATAGCAAATTCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACCCACTTCCCCCACACCACAGACTTATAATATAGCAAATTCTA  550

seq1  CAATAATATAGTAAACATACAGATTTAGTGGAAATGTAGAAGTGGAAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATAGTAAACATACAGATTTAGTGGAAATGTAGAAGTGGAAGGT  600

seq1  AGTTGCTTATTATTCTTGAGATGTCTTAAGAATCTACCGTGATGAATTC  648
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTATTATTCTTGAGATGTCTTAAGAATCTACCGTGATGAATTC  649

seq1: chr13_115441803_115442920
seq2: B6Ng01-034B07.g_70_1191

seq1  GAATTCATTGCCTGTGCACTCACCAGAGATGACGATAATGCGAGAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCCTGTGCACTCACCAGAGATGACGATAATGCGAGAATAGC  50

seq1  TGGGGCATAAAACCACAGTCAATTGACAGAACCGTCTAGCATACAGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATAAAACCACAGTCAATTGACAGAACCGTCTAGCATACAGTGGG  100

seq1  TCAGACGCAGAGGTGCTGCTGTGTGATCTTTACAGAACCAATAACATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACGCAGAGGTGCTGCTGTGTGATCTTTACAGAACCAATAACATCTT  150

seq1  GTGAGCTGAACAGCAGATCACCGACTGAGGGGCTGGACGATAAAATCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGAACAGCAGATCACCGACTGAGGGGCTGGACGATAAAATCACA  200

seq1  TCTTTGTCATTAGCTGTGCTGAAATCCACAACTGCTTACCTGCTTTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCATTAGCTGTGCTGAAATCCACAACTGCTTACCTGCTTTCTTG  250

seq1  TATATGTAAATGAACATGGACTCAGAGACCTACTATGTCATTGCAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTAAATGAACATGGACTCAGAGACCTACTATGTCATTGCAAACTG  300

seq1  TTTCGGGGCCAAGATTAAGGCAAAAACTACAGTGTCCACTCTTTTGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGGGCCAAGATTAAGGCAAAAACTACAGTGTCCACTCTTTTGCATG  350

seq1  ATTCTGCCACTTGAATTTTGGATAAGAGACATTTCAGTGACCACATATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCACTTGAATTTTGGATAAGAGACATTTCAGTGACCACATATGA  400

seq1  GCAGTAGCTACATGGTTAGCACATGTCTCCATCTTGAATGCAGTATTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGCTACATGGTTAGCACATGTCTCCATCTTGAATGCAGTATTGAG  450

seq1  GTATGCCTTGTATTTGAAGTACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCTTGTATTTGAAGTACACACACACACACACACACACACACACAC  500

seq1  ACACACACACATACGTGTGTTATGAGCGTGTTATTGAGGACAGAATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACATACGTGTGTTATGAGCGTGTTATTGAGGACAGAATGCAT  550

seq1  ATATATAATGTCTTATTTTCTTTTCACAATTCACAGTACAGAATAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATGTCTTATTTTCTTTTCACAATTCACAGTACAGAATAGGCAC  600

seq1  TCAATAAGTGCGTTGAAAAAATGAGTATAATACCATAGAAACAAATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGTGCGTTGAAAAAATGAGTATAATACCATAGAAACAAATGGAT  650

seq1  AATGACAATCTCTGAGGATCCAGGTTAACTG-TTTTCACTTTTA-TTTTT  698
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  AATGACAATCTCTGAGGATCCAGGTTAACTGTTTTTCACTTTTATTTTTT  700

seq1  TAAATCTGAAACAGCTTACTTACTTGACCCTAGTGAAATTCTACTTGTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGAAACAGCTTACTTACTTGACCCTAGTGAAATTCTACTTGTAG  750

seq1  TCTTATTTTTTAATAAATGGATTAATTTATTTTTTCAATTTTTTATTAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTTTAATAAATGGATTAATTTATTTTTTCAATTTTTTATTAGA  800

seq1  TATTTTCTTCAATTGCATTTCAAATGCTATGACGAAAGTCCCCTCTACCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTCAATTGCATTTCAAATGCTATGACGAAAGTCCCCTCTACCC  850

seq1  TCCCCCTGCCCTGCTCCCCTACACACCCACTCCCACTTCTTGGCCCTGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTGCCCTGCTCCCCTACACACCCACTCCCACTTCTTGGCCCTGGT  900

seq1  GTTCCCCTGTATTGGGGCATATAAAGTTTGCAAGACCAAGGGCCTTTCTT  948
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GTTCCCCTGTATTGGGGCATATAAAG-TTGCAAGACCAAGGGCC-TTCTT  948

seq1  CCCAATCATGGCTGACTAGGCCATCTTGTGCTACATA-TGCATCTAGAGA  997
      ||| |||||||||||||||| |||||||||||||||| ||||||||||||
seq2  CCC-ATCATGGCTGACTAGG-CATCTTGTGCTACATATTGCATCTAGAGA  996

seq1  CACGAGCTCTGGAGGTACTGGTTAGTTCATATTGTTGTTCCATGT-ATAG  1046
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CACGAGCTCTGGAGGTACTGGTTAGTTCATATTGTTG-TCCATGTAATAG  1045

seq1  GGTTGCAGACCCCTTCAGC-TCCTT-AGAT-ACTTT-CTCTAG-CTCC-T  1090
      || |||||||||||||||| ||||| |||| ||||| |||||| |||| |
seq2  GG-TGCAGACCCCTTCAGCTTCCTTAAGATAACTTTCCTCTAGCCTCCTT  1094

seq1  CCATTGGGGGCCCTGTG-TTCCATCCAAT  1118
      |||||||||| |||||| ||| |||||||
seq2  CCATTGGGGG-CCTGTGTTTCAATCCAAT  1122