BAC Information

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BAC

Clone NameB6Ng01-034C21
Chromosome13 (Build37)
Map Location 57,765,859 - 57,887,963
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneSmad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034C21.bB6Ng01-034C21.g
ACCDH863012DH863013
length1,032941
definitionDH863012|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C21, 5' end.DH863013|Mus musculus domesticus DNA, BAC clone: B6Ng01-034C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,765,859 - 57,766,912)(57,887,025 - 57,887,963)
sequence
gaattccaaattgcttatgtgtcagacttggcagcctctttcccaagaga
gggtagccaggggaaaagtgactagtgtatagagaaacctagaaaacctc
acaccagccaagtaaaagtgacaggagtcctggtatgtagtaacacagtc
atgtcaggttttgtctttgacaaacacaccaggaaataccaaacatgcta
atgaaaatgctctttacaaagtgggatatctttagaatcaaagagaagac
tatcatcaaatggccttttccccaaagttccagcctggcaatgtctcact
aaccacatggcattctgtgtcaagcaacaagaagagggagttaccttcct
tctagttggggcttccctgagatcagaaactaggggctgatttacaagta
aagggcaagagatgctcacagaagaatccagaaacacataggtttctctg
cgtgggctccctgtgtgaatgtggtgtgaatggtctgaaggttagtcctg
aatcatctagacgtgggaaccatggtcagctgctcctccctgattgacga
actaatcaatgtttagagggggcatggcacttataaagacataacacatg
acttgctgtttaaacacagattgcattacggttgtcagttaatgtgagtt
aagtagtttttattatctactcatggtcaatgaacagaacttaggcaaga
taaggacactaggggacaatggggaggtgacggggaacaggacagttaca
cagaggaggtgggttctagtgattgggtcaaacagcttacagagagctct
ttattccttccatagagaaacgcttaccatttgaagtgatgggtatgata
tcccactgggcttaaccatgatgtgtatcaaagcatacagcgtttcctgt
agacatagtacacattgattagatgcaggacagaccccaatcaagctcat
tcgacacagttcatctagtaagtacatcatctgggtgcgatgacaagaat
atgccaatataacagaaagtttggtaagtgtc
gaattccttgagggcctcctgggtgttttcgattggtgtacacagcactt
gtatctcctgctctgtgtgcctgcttgcttgctttagctcagagttcttg
tgcgaacctgtccccggcctcccgtggcactggctggcacagggcctctt
ctgttccatcagggacagttcctgaggttgtgccctcttccaatgctacc
agaagtctgggcctgtgcttttgtatgccgacacgtgtaaaagacactac
agaatatttaataaggtcagctctaatacgtgtttgaaaactgtataaat
tgagttagggaaaacagctttgattgcatgagtaatatttaaagtggctg
cttaaaatgcagtaacttttctgtcaataacagaaaaccttctgagctct
ggagagagttttaaagcaagatccagtggctcctgccggtcgtggtgaaa
gttttcattaaacagatgattcatactacccgagctgaatgattaacgtg
aatcacgggaaaagatgctcaggctcgggtgtctgatttatgaatggatt
aggaggtggattcctcaacaatcgattgccttcacaggaggagtttgatt
tactgagaccctcaaaatgttttgttttgttttgttttgttttttacccc
taacactactgtttgttctaaggtgacatctcaggacctttttataggag
aggactttttactttctgagtccagggtactcctgtaaattcctgagtat
gttctaggcttttttcccaaacttgtctcagttagagaggttcacgggtt
aggaccttcctttgtgcagtgggtgtggtgtgtatgcccttgggaaagga
ctggaggaaacctaaattatttcaagatgcccaggcctctaacttgtaca
aagggagatggcttaaggctcctcaactatctgctcagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57765859_57766912
seq2: B6Ng01-034C21.b_45_1076

seq1  GAATTCCAAATTGCTTATGTGTCAGACTTGGCAGCCTCTTTCCCAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTGCTTATGTGTCAGACTTGGCAGCCTCTTTCCCAAGAGA  50

seq1  GGGTAGCCAGGGGAAAAGTGACTAGTGTATAGAGAAACCTAGAAAACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCCAGGGGAAAAGTGACTAGTGTATAGAGAAACCTAGAAAACCTC  100

seq1  ACACCAGCCAAGTAAAAGTGACAGGAGTCCTGGTATGTAGTAACACAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCCAAGTAAAAGTGACAGGAGTCCTGGTATGTAGTAACACAGTC  150

seq1  ATGTCAGGTTTTGTCTTTGACAAACACACCAGGAAATACCAAACATGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGTTTTGTCTTTGACAAACACACCAGGAAATACCAAACATGCTA  200

seq1  ATGAAAATGCTCTTTACAAAGTGGGATATCTTTAGAATCAAAGAGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGCTCTTTACAAAGTGGGATATCTTTAGAATCAAAGAGAAGAC  250

seq1  TATCATCAAATGGCCTTTTCCCCAAAGTTCCAGCCTGGCAATGTCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCAAATGGCCTTTTCCCCAAAGTTCCAGCCTGGCAATGTCTCACT  300

seq1  AACCACATGGCATTCTGTGTCAAGCAACAAGAAGAGGGAGTTACCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGGCATTCTGTGTCAAGCAACAAGAAGAGGGAGTTACCTTCCT  350

seq1  TCTAGTTGGGGCTTCCCTGAGATCAGAAACTAGGGGCTGATTTACAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTGGGGCTTCCCTGAGATCAGAAACTAGGGGCTGATTTACAAGTA  400

seq1  AAGGGCAAGAGATGCTCACAGAAGAATCCAGAAACACATAGGTTTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAAGAGATGCTCACAGAAGAATCCAGAAACACATAGGTTTCTCTG  450

seq1  CGTGGGCTCCCTGTGTGAATGTGGTGTGAATGGTCTGAAGGTTAGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGCTCCCTGTGTGAATGTGGTGTGAATGGTCTGAAGGTTAGTCCTG  500

seq1  AATCATCTAGACGTGGGAACCATGGTCAGCTGCTCCTCCCTGATTGACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTAGACGTGGGAACCATGGTCAGCTGCTCCTCCCTGATTGACGA  550

seq1  ACTAATCAATGTTTAGAGGGGGCATGGCACTTATAAAGACATAACACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCAATGTTTAGAGGGGGCATGGCACTTATAAAGACATAACACATG  600

seq1  ACTTGCTGTTTAAACACAGATTGCATTACGGTTGTCAGTTAATGTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGTTTAAACACAGATTGCATTACGGTTGTCAGTTAATGTGAGTT  650

seq1  AAGTAGTTTTTATTATCTACTCATGGTCAATGAACAGAACTTAGGCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTTTTTATTATCTACTCATGGTCAATGAACAGAACTTAGGCAAGA  700

seq1  TAAGGACACTAGGGGACAATGGGGAGGTGACGGGGAACAGGACAGTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACACTAGGGGACAATGGGGAGGTGACGGGGAACAGGACAGTTACA  750

seq1  CAGAGGAGGTGGGTTCTAGTGATTGGGTCAAAACAGCTTACAGAGAGCTC  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGAGGAGGTGGGTTCTAGTGATTGGGTC-AAACAGCTTACAGAGAGCTC  799

seq1  TTTATTCCTTCCATAGAGAAACGCTTACCATTTGAAGTGATGGGTATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTTCCATAGAGAAACGCTTACCATTTGAAGTGATGGGTATGAT  849

seq1  AATCCCACTGGCCTTAACCATGATGTGTATCAAAGCATTACAGCGTTTCC  900
       |||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  -ATCCCACTGGGCTTAACCATGATGTGTATCAAAGCA-TACAGCGTTTCC  897

seq1  TGTAGACATAGGTACACATTGATTTTAAGATGCAAGACAGAACCCCAAAT  950
      |||||||||| |||||||||||||   ||||||| ||||||  ||| |||
seq2  TGTAGACATA-GTACACATTGATT---AGATGCAGGACAGA--CCCCAAT  941

seq1  CCAAAGCCTCATTCCGACCACAGTTTCATTCCTAGTAAAGTAACATCATC  1000
      |  ||| |||||| ||| ||||| |||||  ||||| |||| ||||||||
seq2  C--AAG-CTCATT-CGA-CACAG-TTCAT--CTAGT-AAGT-ACATCATC  981

seq1  TGGGTGCTGATGACAAGAATATGCCCACTAATACAGAAAGGTTGGGTAAG  1050
      ||||||| ||||||||||||||| ||| ||  ||||||| ||| ||||||
seq2  TGGGTGC-GATGACAAGAATATG-CCAATATAACAGAAA-GTTTGGTAAG  1028

seq1  TGTC  1054
      ||||
seq2  TGTC  1032

seq1: chr13_57887025_57887963
seq2: B6Ng01-034C21.g_67_1007 (reverse)

seq1  CAGCTGAGCAGATAGTTGAGGAGCCTTAAGCCATCT-CCTTTGT-CCAGT  48
      |||||||||||||||||||||||||||||||||||| ||||||| | |||
seq2  CAGCTGAGCAGATAGTTGAGGAGCCTTAAGCCATCTCCCTTTGTACAAGT  50

seq1  TAGAGGCCTTGGGCCTCTTGAACTAATTTAGGTTTCCTCCAGTCCTTTCC  98
      |||||||| ||||| ||||||| |||||||||||||||||||||||||||
seq2  TAGAGGCC-TGGGCATCTTGAAATAATTTAGGTTTCCTCCAGTCCTTTCC  99

seq1  CAAGGGCATACACACCACACCCACCTGCAC-AAGGAAGGTCCTAACCCCG  147
      ||||||||||||||||||||||| |||||| |||||||||||||| ||||
seq2  CAAGGGCATACACACCACACCCA-CTGCACAAAGGAAGGTCCTAA-CCCG  147

seq1  TGAACCTCTCTAACTGAGACAAGTTTGGG-AAAAAGCCTAGAACATACTC  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAACCTCTCTAACTGAGACAAGTTTGGGAAAAAAGCCTAGAACATACTC  197

seq1  AGGAATTTACAGGAGTACCCTGGACTCAGAAAGT-AAAAGTCCTCTCCTA  245
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGAATTTACAGGAGTACCCTGGACTCAGAAAGTAAAAAGTCCTCTCCTA  247

seq1  TAAAAAGGTCCTGAGATGTCACCTTAGAACAAACAGTAGTGTTAGGGGTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGTCCTGAGATGTCACCTTAGAACAAACAGTAGTGTTAGGGGTA  297

seq1  AAAAACAAAACAAAACAAAACAAAACATTTTGAGGGTCTCAGTAAATCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAAACAAAACAAAACATTTTGAGGGTCTCAGTAAATCAA  347

seq1  ACTCCTCCTGTGAAGGCAATCGATTGTTGAGGAATCCACCTCCTAATCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCTGTGAAGGCAATCGATTGTTGAGGAATCCACCTCCTAATCCA  397

seq1  TTCATAAATCAGACACCCGAGCCTGAGCATCTTTTCCCGTGATTCACGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATCAGACACCCGAGCCTGAGCATCTTTTCCCGTGATTCACGTT  447

seq1  AATCATTCAGCTCGGGTAGTATGAATCATCTGTTTAATGAAAACTTTCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCAGCTCGGGTAGTATGAATCATCTGTTTAATGAAAACTTTCAC  497

seq1  CACGACCGGCAGGAGCCACTGGATCTTGCTTTAAAACTCTCTCCAGAGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACCGGCAGGAGCCACTGGATCTTGCTTTAAAACTCTCTCCAGAGCT  547

seq1  CAGAAGGTTTTCTGTTATTGACAGAAAAGTTACTGCATTTTAAGCAGCCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTTTTCTGTTATTGACAGAAAAGTTACTGCATTTTAAGCAGCCA  597

seq1  CTTTAAATATTACTCATGCAATCAAAGCTGTTTTCCCTAACTCAATTTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATATTACTCATGCAATCAAAGCTGTTTTCCCTAACTCAATTTAT  647

seq1  ACAGTTTTCAAACACGTATTAGAGCTGACCTTATTAAATATTCTGTAGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCAAACACGTATTAGAGCTGACCTTATTAAATATTCTGTAGTG  697

seq1  TCTTTTACACGTGTCGGCATACAAAAGCACAGGCCCAGACTTCTGGTAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACACGTGTCGGCATACAAAAGCACAGGCCCAGACTTCTGGTAGC  747

seq1  ATTGGAAGAGGGCACAACCTCAGGAACTGTCCCTGATGGAACAGAAGAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGAGGGCACAACCTCAGGAACTGTCCCTGATGGAACAGAAGAGG  797

seq1  CCCTGTGCCAGCCAGTGCCACGGGAGGCCGGGGACAGGTTCGCACAAGAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCAGCCAGTGCCACGGGAGGCCGGGGACAGGTTCGCACAAGAA  847

seq1  CTCTGAGCTAAAGCAAGCAAGCAGGCACACAGAGCAGGAGATACAAGTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGCTAAAGCAAGCAAGCAGGCACACAGAGCAGGAGATACAAGTGC  897

seq1  TGTGTACACCAATCGAAAACACCCAGGAGGCCCTCAAGGAATTC  939
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACCAATCGAAAACACCCAGGAGGCCCTCAAGGAATTC  941