BAC Information

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BAC

Clone NameB6Ng01-035D02
Chromosome13 (Build37)
Map Location 27,112,240 - 27,113,259
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
Downstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D02.b
ACCDH863730
length1,006
definitionDH863730|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D02, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcttaccttttactagttaagatgcaataatagtgtgttttag
aaaagttcaagatactaaccaattataaacagatgtagtttagcattacg
gttatataagataactaaaattccaaaataacgaaatagggatttacagc
tataaggaaactgtcttctctaacggaagaccaagcattgatgagtgtag
ggaatgatcacaatcgacacgattgcagccttcttgatttgtatctaaca
tgactgtttctgaataaccttgatgtttttttttctaatgtgattttttt
tcctagtcctgtaagtaaacaaagctgtcagcatgggatatgcagctcta
aaactattgacactgtcagctacaagaatatataggatatcttggaaaca
agattaaggtaaactaatgttttggtttatagtgaagtattcacgacaat
ctcaaaggtatgcacacttagtgctcagttggaggtgccagtttaggaga
tggtttaatatggctgggcactaatatttatgaccttccctgggcttctg
tctcagctatgctttctgggttgtggataagaagactctcagtgatgtgg
tcatagccaagagtcatttctatctctctgccatctcctcccaccaaaga
gtatactttaaacttgtaaacctgaataaaacttgttatgttggtatttt
gtcagatattttggtctgagtcatgagtacattctagtttggaacaaaac
tttttgttcttgaaatttttagaagccccctttttactcaaattgcagtg
gatcttggtcttgtggtcatttaagaactctttttctatcagcaacccaa
ctctgcaatctcatctattagttctctttagtagtccatgggtctttgga
ctagctctcaatactggacagttagttcatgaattttttctgactcgaca
gtattttagattttttgatagctagcagtagagtcatgtagacgagctgg
catgaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27112240_27113259
seq2: B6Ng01-035D02.b_47_1052

seq1  GAATTCTTCTTACCTTTTACTAGTTAAGATGCAATAATAGTGTGTTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTACCTTTTACTAGTTAAGATGCAATAATAGTGTGTTTTAG  50

seq1  AAAAGTTCAAGATACTAACCAATTATAAACAGATGTAGTTTAGCATTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCAAGATACTAACCAATTATAAACAGATGTAGTTTAGCATTACG  100

seq1  GTTATATAAGATAACTAAAATTCCAAAATAACGAAATAGGGATTTACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAAGATAACTAAAATTCCAAAATAACGAAATAGGGATTTACAGC  150

seq1  TATAAGGAAACTGTCTTCTCTAACGGAAGACCAAGCATTGATGAGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAAACTGTCTTCTCTAACGGAAGACCAAGCATTGATGAGTGTAG  200

seq1  GGAATGATCACAATCGACACGATTGCAGCCTTCTTGATTTGTATCTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATCACAATCGACACGATTGCAGCCTTCTTGATTTGTATCTAACA  250

seq1  TGACTGTTTCTGAATAACCTTGATGTTTTTTTTTCTAATGTGATTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTCTGAATAACCTTGATGTTTTTTTTTCTAATGTGATTTTTTT  300

seq1  TCCTAGTCCTGTAAGTAAACAAAGCTGTCAGCATGGGATATGCAGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCCTGTAAGTAAACAAAGCTGTCAGCATGGGATATGCAGCTCTA  350

seq1  AAACTATTGACACTGTCAGCTACAAGAATATATAGGATATCTTGGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTGACACTGTCAGCTACAAGAATATATAGGATATCTTGGAAACA  400

seq1  AGATTAAGGTAAACTAATGTTTTGGTTTATAGTGAAGTATTCACGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGGTAAACTAATGTTTTGGTTTATAGTGAAGTATTCACGACAAT  450

seq1  CTCAAAGGTATGCACACTTAGTGCTCAGTTGGAGGTGCCAGTTTAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGTATGCACACTTAGTGCTCAGTTGGAGGTGCCAGTTTAGGAGA  500

seq1  TGGTTTAATATGGCTGGGCACTAATATTTATGACCTTCCCTGGGCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAATATGGCTGGGCACTAATATTTATGACCTTCCCTGGGCTTCTG  550

seq1  TCTCAGCTATGCTTTCTGGGTTGTGGATAAGAAGACTCTCAGTGATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTATGCTTTCTGGGTTGTGGATAAGAAGACTCTCAGTGATGTGG  600

seq1  TCATAGCCAAGAGTCATTTCTATCTCTCTGCCATCTCCT-CCACCAAAGA  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCATAGCCAAGAGTCATTTCTATCTCTCTGCCATCTCCTCCCACCAAAGA  650

seq1  GTATACTTTAAAC-TGTAAACCTGAATAAAACCTTGTTATGTT-GTATTT  697
      ||||||||||||| ||||||||||||||||| ||||||||||| ||||||
seq2  GTATACTTTAAACTTGTAAACCTGAATAAAA-CTTGTTATGTTGGTATTT  699

seq1  TGTCAGATA-TTTGGTCTGAGTCATGAGTACATTCTAGTTT-GAACAAAA  745
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCAGATATTTTGGTCTGAGTCATGAGTACATTCTAGTTTGGAACAAAA  749

seq1  C-TTTTGTTC-TGAAATTTTCAGAAGCCCCCTTTTTACTCAAATTGCAGT  793
      | |||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  CTTTTTGTTCTTGAAATTTTTAGAAGCCCCCTTTTTACTCAAATTGCAGT  799

seq1  -GATC-TGGTCTTGTGGTCATTTAAGAACTC-TTTTCTATCAGCAACCCA  840
       |||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGATCTTGGTCTTGTGGTCATTTAAGAACTCTTTTTCTATCAGCAACCCA  849

seq1  ACTCTGCAATCCTCCATCTA-TAGTTCTCTTTAGTTAGTCCCATGGTGTC  889
      |||||||||||   |||||| ||||||||||||| |||| |||||| |||
seq2  ACTCTGCAATC--TCATCTATTAGTTCTCTTTAG-TAGT-CCATGG-GTC  894

seq1  TTTGGGACTAGCTCTCAAATACTGGAACCAGTTAGTTTCATGAAATTTTT  939
      ||| |||||||||||| |||||||||  ||||||| ||||||||  ||||
seq2  TTT-GGACTAGCTCTC-AATACTGGA--CAGTTAG-TTCATGAA--TTTT  937

seq1  TTCTGACTTCAGACAAGTATTTTAGATTTTTCTGCATATAGGCTTAAGCA  989
      ||||||||   ||| |||||||||||||||| ||   ||| |||  ||||
seq2  TTCTGACT--CGAC-AGTATTTTAGATTTTT-TG---ATA-GCT--AGCA  977

seq1  GTAGAGTCATGTAAGACAGAGCTGGCATGAA  1020
      |||||||||||| |||| |||||||||||||
seq2  GTAGAGTCATGT-AGAC-GAGCTGGCATGAA  1006