BAC Information

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BAC

Clone NameB6Ng01-035F21
Chromosome13 (Build37)
Map Location 84,514,618 - 84,632,013
singlet/doubletdoublet
Overlap geneLOC667111
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795
Downstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035F21.bB6Ng01-035F21.g
ACCDH863853DH863854
length967980
definitionDH863853|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F21, 5' end.DH863854|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,514,618 - 84,515,619)(84,631,043 - 84,632,013)
sequence
gaattcagctttctcggtcagtgatatcacttcctgtggaaacattcaca
gtacagccttctccacttccttttcttgtaaaaacaactttatttttact
tactgtgtatgggtgttttgctaggctgtaggcctgatcatcacaagtgt
gaggttcccatggatgctggaagagggcatctgagctctttgaattaaaa
gtgctgtgagctgccatgttggtgctgggaacagaacctggatcttctgg
aagatcagccagtgctcttgatcactgagtcccacactgggccccacact
tccctgtcattaacataagcatagaggacaaggatccagaagagaccatg
tccattattcattctcagttatcattcgggctgtgaaaatcctacatccc
tcttccttttttttttttttaaagatttatttatttatttattatatgta
agtacactgtagctgtcttcagacactccagaagagggcgtcagatctct
ttacggatggttttgagccaccatgtggttgctgggatttgaactcagga
cctttggaagagcagtcagtgttcttacccgctgagccatctcaccagcc
ctacatctctcttcctaacagttgcagctgctctttgactgtattggcta
tgtgctattctaaaccctgtaaaactttttttttcttttgcttactctat
gaatttgatcacttccatgtcactgactccacagatccttattttttgat
accatttatccccatttcacgacatactttcatcttaccatctatgtgtg
ctatctctgatcagtgtcccattcttcacattttcatgtcatatctacat
ctattatatctcctgtctgacgttgtacagtcttcttttttttctgtagc
tcattcatctcatgtcgatcatcagctctccatgctactggatcgctggc
tgacttatttcttaaca
gaattccatataaggtattgctccaaccccctccccccaaacttcagagg
tccactcatagctccttgccccaaaaaacttctcgtttgttgttgttgtt
tgtttgtttgtttgtttttaagcacttcttgactggatccgatttgtgtg
gcccatgtactcctgagtttggaaatgttaagactctccaagaacttctg
acttctttctgctgttaaacagtttatttagctgggaaatttataggatg
atgcttgtcctcttgttcttaggatttgtaacttggtagttcatgtcttg
cacatacattaggtcatttttacttatcacagttggcattcactgtgaca
ctggaaatataccccattatttcttttccttctgaaagtgttattagtca
cagactgcatctgctcattctttttctcttaattttttagaaatattact
tccagctgtgttactctcgtggctgctctctgggatcatttcctcagcct
gtcatgtactctgttatccttaactaggtacaatctatttattttaaggc
ttttaacaatttttttttaatttcaaattacttttctaattttctaaaaa
aaatgtatttttgttatcttttcaattgcacttttctttgtgacttttcc
cctgaattccttgtttttatattttactggttcataaacaaattttccag
tgtctaactattctaatgaattcttagatatactcacaacctgttagttt
ggcctgtttctctcttgggcaaattattcataagggggaatcatttaatg
aaatgctctccaataggttctacttggtcccattttggggtttctgtttg
gggataatttgagagatataatgagggcttcttgcacccggaactgacaa
cacaagccaggagaagcatggtattggcaggttttcctttcctcttccct
tctctgtaaaacctgaattattcctaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84514618_84515619
seq2: B6Ng01-035F21.b_43_1009

seq1  GAATTCAGCTTTCTCGGTCAGTGATATCACTTCCTGTGGAAACATTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTCTCGGTCAGTGATATCACTTCCTGTGGAAACATTCACA  50

seq1  GTACAGCCTTCTCCACTTCCTTTTCTTGTAAAAACAACTTTATTTTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCTTCTCCACTTCCTTTTCTTGTAAAAACAACTTTATTTTTACT  100

seq1  TACTGTGTATGGGTGTTTTGCTAGGCTGTAGGCCTGATCATCACAAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGTATGGGTGTTTTGCTAGGCTGTAGGCCTGATCATCACAAGTGT  150

seq1  GAGGTTCCCATGGATGCTGGAAGAGGGCATCTGAGCTCTTTGAATTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCCCATGGATGCTGGAAGAGGGCATCTGAGCTCTTTGAATTAAAA  200

seq1  GTGCTGTGAGCTGCCATGTTGGTGCTGGGAACAGAACCTGGATCTTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGAGCTGCCATGTTGGTGCTGGGAACAGAACCTGGATCTTCTGG  250

seq1  AAGATCAGCCAGTGCTCTTGATCACTGAGTCCCACACTGGGCCCCACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGCCAGTGCTCTTGATCACTGAGTCCCACACTGGGCCCCACACT  300

seq1  TCCCTGTCATTAACATAAGCATAGAGGACAAGGATCCAGAAGAGACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCATTAACATAAGCATAGAGGACAAGGATCCAGAAGAGACCATG  350

seq1  TCCATTATTCATTCTCAGTTATCATTCGGGCTGTGAAAATCCTACATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTATTCATTCTCAGTTATCATTCGGGCTGTGAAAATCCTACATCCC  400

seq1  TCTTCCTTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTATATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTATATGTA  450

seq1  AGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTCT  500

seq1  TTACGGATGGTTTTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGATGGTTTTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGA  550

seq1  CCTTTGGAAGAGCAGTCAGTGTTCTTACCCGCTGAGCCATCTCACCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAGAGCAGTCAGTGTTCTTACCCGCTGAGCCATCTCACCAGCC  600

seq1  CTACATCTCTCTTCCTAACAGTTGCAGCTGCTCTTTGACTGTATTGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTCTCTTCCTAACAGTTGCAGCTGCTCTTTGACTGTATTGGCTA  650

seq1  TGTGCTATTCTAAACCCTGTAAAACTTTTTTTTTCTTTTGCTTACTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATTCTAAACCCTGTAAAACTTTTTTTTTCTTTTGCTTACTCTAT  700

seq1  GAATTTGATCACTTCCATGTCACTGACTCCACAGATCCTTATTTTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGATCACTTCCATGTCACTGACTCCACAGATCCTTATTTTTTGAT  750

seq1  ACCATTTATCCCCCATTTCACGACATACTTTCATCTTACCATCTATGTGT  800
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTAT-CCCCATTTCACGACATACTTTCATCTTACCATCTATGTGT  799

seq1  GCTATCTCTGATTCCAAGTGTCCCATTCTTCCACAATTTTTCCATGTCAA  850
      ||||||||||||    |||||||||||||| ||||   ||| ||||||| 
seq2  GCTATCTCTGAT---CAGTGTCCCATTCTT-CACA---TTTTCATGTCA-  841

seq1  TTATTCTACATTCCTTATTTATATCTCCCTTGTCCTTGACGTTTGTAACA  900
       || |||||||  ||   ||||||||||  ||||  ||||| |||| |||
seq2  -TA-TCTACAT--CT--ATTATATCTCC--TGTC--TGACG-TTGT-ACA  879

seq1  GTCTTCCTTTTTTTTCCTGTAAGCTTCATTTCCATCTCATGTCGATCAAT  950
      ||||||  ||||||| |||| ||| |||||  ||||||||||||||||  
seq2  GTCTTC--TTTTTTTTCTGT-AGC-TCATT--CATCTCATGTCGATCA--  921

seq1  CCAGCTCTCCATGGCTACTGGATTCAGCTGGGCCTTGACTTATTTCTTAA  1000
       ||||||||||| ||||||||||   |||||    |||||||||||||||
seq2  TCAGCTCTCCAT-GCTACTGGAT--CGCTGG---CTGACTTATTTCTTAA  965

seq1  CA  1002
      ||
seq2  CA  967

seq1: chr13_84631043_84632013
seq2: B6Ng01-035F21.g_66_1045 (reverse)

seq1  GCCTTAGGAATGTAATCTAAGGTTTTACAGGAAAGGGAAGAGGAAAGGAA  50
      ||||||||||  |||| | |||||||||||  ||||||||||||||||||
seq2  GCCTTAGGAA--TAAT-TCAGGTTTTACAGAGAAGGGAAGAGGAAAGGAA  47

seq1  AACCTGCCAGTACCATGCTCTACCTGGCTTGTGTTGTCATGTTCAGGGCT  100
      ||||||||| |||||||||   ||||||||||||||||| |||| ||| |
seq2  AACCTGCCAATACCATGCTTCTCCTGGCTTGTGTTGTCA-GTTCCGGG-T  95

seq1  GCAAG-AGCCCTTCATATATCTCTCAAA-TATCCCCAAACAGAAACACC-  147
      ||||| ||||||   ||||||||||||| ||||||||||||||||| || 
seq2  GCAAGAAGCCCTCATTATATCTCTCAAATTATCCCCAAACAGAAACCCCA  145

seq1  AAATGTGACCAAGTAGAGCCTATTGG-GAGCATTTCATTTAAATGATACC  196
      ||||| ||||||||||| |||||||| |||||||||| ||||||||| ||
seq2  AAATGGGACCAAGTAGAACCTATTGGAGAGCATTTCA-TTAAATGATTCC  194

seq1  ACCTTATGGAATAATTTGCCCAATGAGAGAAACAGGCAAAACTAACAGGT  246
       |||||| ||||||||||||||| ||||||||||||| ||||||||||||
seq2  CCCTTAT-GAATAATTTGCCCAA-GAGAGAAACAGGCCAAACTAACAGGT  242

seq1  TGTGAGTATATCCTAAGAATTCATTAGAATAGTTAGACACTGGAAAATTT  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTATAT-CTAAGAATTCATTAGAATAGTTAGACACTGGAAAATTT  291

seq1  GTTTATGAA-CAGTAAAATAT-AAAACAAGGAA-TCAAGGGAAAAGTCAC  343
      ||||||||| ||||||||||| ||||||||||| ||| ||||||||||||
seq2  GTTTATGAACCAGTAAAATATAAAAACAAGGAATTCAGGGGAAAAGTCAC  341

seq1  AA--GAAAGTGCAATTG-AAAGATAAC-AAAATACA-TTTTTTTAG-AAA  387
      ||   |||||||||||| ||||||||| |||||||| ||||||||| |||
seq2  AAAGAAAAGTGCAATTGAAAAGATAACAAAAATACATTTTTTTTAGAAAA  391

seq1  TTAG-AAAGTAA-TTGAAATT-AAAAAAAATTGTTAAAAGCCTTAAA--T  432
      |||| ||||||| |||||||| |||||||||||||||||||||||||   
seq2  TTAGAAAAGTAATTTGAAATTAAAAAAAAATTGTTAAAAGCCTTAAAATA  441

seq1  AATAGATTGTACCTAGTTAAGGATAACAGAGTACATGACAGGCTGAGGAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTGTACCTAGTTAAGGATAACAGAGTACATGACAGGCTGAGGAA  491

seq1  ATGATCCCAGAGAGCAGCCACGAGAGTAACACAGCTGGAAGTAATATTTC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCCAGAGAGCAGCCACGAGAGTAACACAGCTGGAAGTAATATTTC  541

seq1  TAAAAAATTAAGAGAAAAAGAATGAGCAGATGCAGTCTGTGACTAATAAC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTAAGAGAAAAAGAATGAGCAGATGCAGTCTGTGACTAATAAC  591

seq1  ACTTTCAGAAGGAAAAGAAATAATGGGGTATATTTCCAGTGTCACAGTGA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGAAGGAAAAGAAATAATGGGGTATATTTCCAGTGTCACAGTGA  641

seq1  ATGCCAACTGTGATAAGTAAAAATGACCTAATGTATGTGCAAGACATGAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAACTGTGATAAGTAAAAATGACCTAATGTATGTGCAAGACATGAA  691

seq1  CTACCAAGTTACAAATCCTAAGAACAAGAGGACAAGCATCATCCTATAAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGTTACAAATCCTAAGAACAAGAGGACAAGCATCATCCTATAAA  741

seq1  TTTCCCAGCTAAATAAACTGTTTAACAGCAGAAAGAAGTCAGAAGTTCTT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGCTAAATAAACTGTTTAACAGCAGAAAGAAGTCAGAAGTTCTT  791

seq1  GGAGAGTCTTAACATTTCCAAACTCAGGAGTACATGGGCCACACAAATCG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTCTTAACATTTCCAAACTCAGGAGTACATGGGCCACACAAATCG  841

seq1  GATCCAGTCAAGAAGTGCTTAAAAACAAACAAACAAACAAACAACAACAA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTCAAGAAGTGCTTAAAAACAAACAAACAAACAAACAACAACAA  891

seq1  CAAACGAGAAGTTTTTTGGGGCAAGGAGCTATGAGTGGACCTCTGAAGTT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGAGAAGTTTTTTGGGGCAAGGAGCTATGAGTGGACCTCTGAAGTT  941

seq1  TGGGGGGAGGGGGTTGGAGCAATACCTTATATGGAATTC  971
      |||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAGGGGGTTGGAGCAATACCTTATATGGAATTC  980