BAC Information

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BAC

Clone NameB6Ng01-036N21
Chromosome13 (Build37)
Map Location 111,526,854 - 111,651,870
singlet/doubletdoublet
Overlap geneLOC100040614
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036N21.bB6Ng01-036N21.g
ACCDH864908DH864909
length905984
definitionDH864908|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N21, 5' end.DH864909|Mus musculus domesticus DNA, BAC clone: B6Ng01-036N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,526,854 - 111,527,842)(111,650,884 - 111,651,870)
sequence
gaattcagttctccacatacacatcaggcttctcacagtcatctgtagct
caggctccagtgaatctatcaccctcttctggcccttgttagtccctgca
tacacacagcgctctctctgtctctctgtctctctgtctctctctgtctc
tctctgtctctctttgtctctgtctctgtctctgtctctgtctctgtctc
tctctctctctctctctctctctctctctctctcacacacacacacacac
acacacacacacacataaaaccaaatgttaaagaaaggtacttaatatgg
gtttaataatattccacaacttaaaaatttttaaatatgctctcattgtt
attcaatttaaggtatttttttagtttttaaaagtattttttgttacttg
tatgtttgcatgtctgtgagtgagtgtgcacttgagttcagatattctta
gaagccaaaagagagtagcattttcctggagctgtagtcagatggggcta
tgagccatctgactgtgtgctgagaaccaacatgggtcttatctaagagc
agcactcatcacctaaccaccgagccatctctcaattcaatattcagatg
ttcttgatctatgtatattagattcctttaagcacattatgtatccattt
atccatattgatgatattcttattacattcatgtatccttcagtctcctc
tggaccatactttcctccttcctctatagtgctcctaccacttcaccact
ctgccttcatggccttgcattctctatcaggcacgaaccttcatggacca
atgaacattcctcactggatgctcagccatctttttaggtaatgtccagt
gatacttactcaacttatagagcactgcatagagatttagctgaaattct
tgtgt
gaattccattctggaacccaagtttgaatatccactaggctgtactcact
gaaatgcagtaagagctgtcttttagttactctactgagacatccattgt
gcgttctgctgtttgacagtgatggataattatatgggagtgaaaatgat
gtgacttctcttactttcatgttcatgaaaatgcaaggaatgatgttttc
tttatcaagcctataaactcctttggttattcactcatgttttcagtggt
tctcttactaaatactttctaggtattttatatgagtcaagttttgacct
acgtacttagatttatcttggaatgaatgcacatttctcattgggttata
gtctaatgagagaagatagataacaataaacaagttaagttgacagaaat
catgagatgccaggcaagacttgggagtagaaatgatgggtgttttattt
tgtttattttatttctgagacagacatatcccatatggggctctaactat
atagctgaaggttaccttgagcttgatcttcttacccccacccttccggt
tctttagaagtaatgtccagggtgtgttgttctttgagactgaacctttg
tgcatgctagactagcatctaacaaatgacctatatccccagcccaacag
ctaccattttcaatatgaaagtcagcacatgctgatctctaactagatac
agaaatgaatcataggcgttatcttgtacaggtgtgcagagggacagcat
tcttgggagccagaggacccatgcatggcctaaatactggcatacatctt
ctctgaagggcatggactagttggcactagagcaggacaccaaattaaat
ctaattttctctgagaaatttataaaaaagaaagaagatagaaatccgtt
gaaatcatcttttcggtttccaggcttgcttccagaagtcacttcttgag
gttgccttcctactcggttggccttgtgacttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111526854_111527842
seq2: B6Ng01-036N21.b_46_950

seq1  GAATTCAGTTCTCCACATACACATCAGGCTTCTCACAGTCATCTGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCCACATACACATCAGGCTTCTCACAGTCATCTGTAGCT  50

seq1  CAGGCTCCAGTGAATCTATCACCCTCTTCTGGCCCTTGTTAGTCCCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCAGTGAATCTATCACCCTCTTCTGGCCCTTGTTAGTCCCTGCA  100

seq1  TACACACAGCGCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGCGCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTGTCTC  150

seq1  TCTCTGTCTCTCTTTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTTTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC  200

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACAC  250

seq1  ACACACACACACACATAAAACCAAATGTTAAAGAAAGGTACTTAATATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATAAAACCAAATGTTAAAGAAAGGTACTTAATATGG  300

seq1  GTTTAATAATATTCCACAACTTAAAAATTTTTAAATATGCTCTCATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAATATTCCACAACTTAAAAATTTTTAAATATGCTCTCATTGTT  350

seq1  ATTCAATTTAAGGTATTTTTTTAGTTTTTAAAAGTATTTTTTGTTACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTAAGGTATTTTTTTAGTTTTTAAAAGTATTTTTTGTTACTTG  400

seq1  TATGTTTGCATGTCTGTGAGTGAGTGTGCACTTGAGTTCAGATATTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGCATGTCTGTGAGTGAGTGTGCACTTGAGTTCAGATATTCTTA  450

seq1  GAAGCCAAAAGAGAGTAGCATTTTCCCTGGAGCTGTAGTCAGATGGGGCT  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAGCCAAAAGAGAGTAGCATTTT-CCTGGAGCTGTAGTCAGATGGGGCT  499

seq1  ATGAGCCATCTGACTGGGGTGCTGAGAACCAAACATGGGTCTTATCTAAG  550
      ||||||||||||||| | |||||||||||| |||||||||||||||||||
seq2  ATGAGCCATCTGACT-GTGTGCTGAGAACC-AACATGGGTCTTATCTAAG  547

seq1  AGCAGCACTCATTCACCTAACCACCGAGCCATCTCTCAATTCAAAATATT  600
      ||||||||||| ||||||||||||||||||||||||||||||  ||||||
seq2  AGCAGCACTCA-TCACCTAACCACCGAGCCATCTCTCAATTC--AATATT  594

seq1  TCAAGATGTTTTCTTGATCTATGTATTATTTAGATTTCCTTTTTAAAAGC  650
         |||||  ||||||||||||||||   ||||| |||||||    ||||
seq2  --CAGATG--TTCTTGATCTATGTAT--ATTAGA-TTCCTTT----AAGC  633

seq1  ACATTTATTTTTATCCATATTTTATCCATATTTTTATTGGAT-ATTTTCT  699
      ||||   | | ||||||   ||||||||||||       ||| || ||||
seq2  ACAT---TATGTATCCA---TTTATCCATATT-------GATGATATTCT  670

seq1  TTATTTACATTTCAAATGTTATCCCCTTTCCAGGTCTCCCCTCTGGAAAC  749
      |   |||||||    ||| |||||    | |||   || ||||||||   
seq2  T--ATTACATT---CATG-TATCC----TTCAG---TCTCCTCTGGA---  704

seq1  CCCCATCTCCTTCCCCTCCCCCTTCCTCTATGAGGGTGCTCCCCTACCCA  799
        |||  | |||    ||| |||||||||||    |||||  |||| |||
seq2  --CCA--TACTT----TCCTCCTTCCTCTAT---AGTGCT--CCTA-CCA  740

seq1  CTCACCCACTCCTGCCTTCATGCCCTGGCATTCCTCTATTCTGGGGCAAC  849
      ||   ||||| ||||||||||| ||| ||||| ||||| || ||    ||
seq2  CTTCACCACT-CTGCCTTCATGGCCTTGCATT-CTCTA-TCAGG---CAC  784

seq1  GAACCTCCACAGGACCAAGGACCATTCCTTTCACT-GATGTCCAACAAGG  898
      |||||| ||  ||||||| || ||||||  ||||| ||||  ||     |
seq2  GAACCTTCA-TGGACCAATGAACATTCC--TCACTGGATGCTCA-----G  826

seq1  CCATCCTCTATAAATGTTTATGTCCAGTGATACTTAATTTCTAAACTTAT  948
      |||| || | ||   | | |||||||||||||||||    || |||||||
seq2  CCAT-CTTTTTA---GGTAATGTCCAGTGATACTTA----CTCAACTTAT  868

seq1  AGAGCACTGCATTAGAGATTTTTAGCTGAAATTCATTGTGT  989
      ||||||||||| ||||||  |||||||||||||| ||||||
seq2  AGAGCACTGCA-TAGAGA--TTTAGCTGAAATTC-TTGTGT  905

seq1: chr13_111650884_111651870
seq2: B6Ng01-036N21.g_68_1050 (reverse)

seq1  GAAGTCACAAAGGCCACACGAGTAGGAAGGCCACCTCAGAAAGTGACTTC  50
      |||||||| |||||||  ||||||||||||| ||||||  ||||||||||
seq2  GAAGTCAC-AAGGCCAACCGAGTAGGAAGGCAACCTCAAGAAGTGACTTC  49

seq1  TGGAAGCAAGACCTGGAAAACCGAAATAGATGGTTTTCAACTGATTTCTA  100
      |||||||||| ||||| ||||||||| |||| | ||||||| ||||||||
seq2  TGGAAGCAAG-CCTGG-AAACCGAAA-AGAT-GATTTCAACGGATTTCTA  95

seq1  TCTTTCTTTTCTTTTTTTTTAAATTTCTTCAAGGAAAACTTAGATTTTAA  150
      || ||||||   |||||| |||||||| |||  ||||| ||||| |||||
seq2  TC-TTCTTT--CTTTTTTATAAATTTC-TCAGAGAAAA-TTAGA-TTTAA  139

seq1  TTTGGTTGTCCTGCTCTAGTGCC-ACTAGTCCATGCCC-TCAGAG-AGAT  197
      ||||| ||||||||||||||||| |||||||||||||| |||||| ||||
seq2  TTTGG-TGTCCTGCTCTAGTGCCAACTAGTCCATGCCCTTCAGAGAAGAT  188

seq1  GTATGCCAGTATTTAGGCCATGCACTGGGTCCTCTGGCTCCC-AGAATGC  246
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  GTATGCCAGTATTTAGGCCATGCA-TGGGTCCTCTGGCTCCCAAGAATGC  237

seq1  TGTCCCTCTGCACACCTGTAC-AGATAACGCCTATGATTCATTTCTGTAT  295
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCCCTCTGCACACCTGTACAAGATAACGCCTATGATTCATTTCTGTAT  287

seq1  CTAGTTAGAGATCAGCATGTGCTGACTTTCATATTGAAAATGGTAGCTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAGAGATCAGCATGTGCTGACTTTCATATTGAAAATGGTAGCTGT  337

seq1  TGGGCTGGGGATATAGGTCATTTGTTAGATGCTAGTCTAGCATGCAC-AA  394
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGGCTGGGGATATAGGTCATTTGTTAGATGCTAGTCTAGCATGCACAAA  387

seq1  GGTTCAGTCTC-AAGAACAACACA-CCTGGACATTACTTCT-AAGAACCG  441
      ||||||||||| |||||||||||| |||||||||||||||| ||||||||
seq2  GGTTCAGTCTCAAAGAACAACACACCCTGGACATTACTTCTAAAGAACCG  437

seq1  GAAGGGTGGGGGTAAGAAGATCAAGCTCAAGGTAACCTTCAGCTATATAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGGGGGTAAGAAGATCAAGCTCAAGGTAACCTTCAGCTATATAG  487

seq1  TTAGAGCCCCATATGGGATATGTCTGTCTCAGAAATAAAATAAACAAAAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCCCATATGGGATATGTCTGTCTCAGAAATAAAATAAACAAAAT  537

seq1  AAAACACCCATCATTTCTACTCCCAAGTCTTGCCTGGCATCTCATGATTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACCCATCATTTCTACTCCCAAGTCTTGCCTGGCATCTCATGATTT  587

seq1  CTGTCAACTTAACTTGTTTATTGTTATCTATCTTCTCTCATTAGACTATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACTTAACTTGTTTATTGTTATCTATCTTCTCTCATTAGACTATA  637

seq1  ACCCAATGAGAAATGTGCATTCATTCCAAGATAAATCTAAGTACGTAGGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATGAGAAATGTGCATTCATTCCAAGATAAATCTAAGTACGTAGGT  687

seq1  CAAAACTTGACTCATATAAAATACCTAGAAAGTATTTAGTAAGAGAACCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTGACTCATATAAAATACCTAGAAAGTATTTAGTAAGAGAACCA  737

seq1  CTGAAAACATGAGTGAATAACCAAAGGAGTTTATAGGCTTGATAAAGAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACATGAGTGAATAACCAAAGGAGTTTATAGGCTTGATAAAGAAA  787

seq1  ACATCATTCCTTGCATTTTCATGAACATGAAAGTAAGAGAAGTCACATCA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATTCCTTGCATTTTCATGAACATGAAAGTAAGAGAAGTCACATCA  837

seq1  TTTTCACTCCCATATAATTATCCATCACTGTCAAACAGCAGAACGCACAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCCCATATAATTATCCATCACTGTCAAACAGCAGAACGCACAA  887

seq1  TGGATGTCTCAGTAGAGTAACTAAAAGACAGCTCTTACTGCATTTCAGTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCTCAGTAGAGTAACTAAAAGACAGCTCTTACTGCATTTCAGTG  937

seq1  AGTACAGCCTAGTGGATATTCAAACTTGGGTTCCAGAATGGAATTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCCTAGTGGATATTCAAACTTGGGTTCCAGAATGGAATTC  983