BAC Information

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BAC

Clone NameB6Ng01-037G03
Chromosome13 (Build37)
Map Location 106,037,159 - 106,168,201
singlet/doubletdoublet
Overlap geneRnf180
Upstream geneCenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656
Downstream geneHtr1a, EG668025, Olfr717-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037G03.bB6Ng01-037G03.g
ACCDH865265DH865266
length1,0081,034
definitionDH865265|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G03, 5' end.DH865266|Mus musculus domesticus DNA, BAC clone: B6Ng01-037G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,167,190 - 106,168,201)(106,037,159 - 106,038,196)
sequence
gaattcttagaaaggtagatgttcattatagtgatttgagcaattattta
tttatttgtttagtgcccatcagaagcccaagcaagaaaagccaaatgag
atgaatagcacccacatcacactaacgtgcctctgccaacacagggcaaa
atcaatagagagataggctacctacggagtatgtggcaacgtgcaatagt
aaaagggtacgttaggttgaaaatcaccatgttcccgagtgagaggcata
cgttcagcatcataaatgttatttaaaattatctttacaattacaatagc
tagctaaaggccactatttaatacctcactatacccagcactgtgcttgt
agcttaagatgatagcacttgactttttcaagtaattcacattaaataag
gcttgaatgatgattatcggatttggaaacaagaagttggcccgtcagtc
attctggaaagagaaatgatagggggagaaacagatggcagtgggagaaa
cagagaaagagagacaaacccaagaatttcttttgaaagaatccaggcat
gctctttggacctacagtcctagctgctctgaaggctgagacaggagggc
tgcctgagcccaggaggagttctggggcagcgtgggtaatatagcaagac
actttctttttctactataaacaagaaggcacacaatattagccagtgat
aaaattaaaacaatcatgttccattaatgtctggctgagtgtgtcacagg
gaatcaaataagaaagtccaggaggtgagcaaaaagccccagaaacaaca
gggtgcttcctgccagcagcctgagggtcaatcccatgaggtgccagcag
tgggggtaatatcacaaaagatgagggacagaatgtggcttgtctcctct
gcagaatgatgtaagcacacatgacaaatatacacactgctcattcagga
acgggttccctcctgagatacaagcggcagttattgacctaaactgaaca
actgtgtt
gaattctctctgctggggcatgaggcgagcctaaaagtgcatttctatca
gagacctatacatcctgagtgagtacatctttaataaatggcaattaggg
aagagattatgtttgtttggaaggacgtttggtagctgaatacagcacag
tttcatgctttccccaaagacgatgtcaatgcatgcttgttgaacagagc
agcgactctatccaatcggctgcactctctctcttggaagcaatactcta
acttcgggctttaagatttttggtaaaatattaatactatttctatcatg
gtatatgctatggaaatatttctggtttaaacaatgcttcacttaaaatg
tcaagtgacagaaatttagttttcccagccaattatttgaaactctgaca
aatatcattaataagataacaaacagaagcactgttgagaaaaactgaag
atgaacattaaaaaatggcaaggcattgaatccacagaccgggagagtgg
ccaacatggcaatagaggggtctgcccgcagggacagtgcagtccctacg
gcagtctccaaaaccgcagcagcacaaccaagaacttcactaaaaaatga
gttttaattactaataattgtaaccatgatttttgtgtgtggctttctaa
ttaaaaaataaaaatttaaaaaggcaagaggagcacctgggcccagggcg
tggctccgagccagggaagtcacctagtaaggccacgtctctgggttcct
ccccgtacaatagagaacaaaaatgagttgtttggacggatgtcactact
caaggcctttgctacctcaagcaggcatatgagtaatgttcatggaatga
atcttgattaaacatggatgatttgtcaaactgtgccattatttatctca
gctattaactcttgctagtatctgcctttctgtttgatcagcgagaccca
ctttatgagttatcattatttctagctcttgacatgatgtgggtgatcaa
taatccaagagattttgcttaccatatcctcggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106167190_106168201
seq2: B6Ng01-037G03.b_48_1054 (reverse)

seq1  ACACAGTTGTTCAGTTTAGGTCAATAACTGCCGCTTGTATCTCAGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGTTCAGTTTAGGTCAATAACTGCCGCTTGTATCTCAGGAGGG  50

seq1  AACCCGTTTCCTGAATGAGCAGTGTGGTATATTTGTCATGTGTGCTTACA  100
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  AACCCG-TTCCTGAATGAGCAGTGT-GTATATTTGTCATGTGTGCTTACA  98

seq1  TCATTCCTGCAGAGGAGAACAAGCCACATTCTGTCCCTCATCTTTTGTGA  150
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATT-CTGCAGAGGAG-ACAAGCCACATTCTGTCCCTCATCTTTTGTGA  146

seq1  TATTACCCCCACCTGCTGGCACCTCATGGGATTGACCCTCAGGCTGCTGG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATTACCCCCA-CTGCTGGCACCTCATGGGATTGACCCTCAGGCTGCTGG  195

seq1  CAGGAAGCACCCTGTTGTTTCTGGGGCTTTTTGCTCACCTCCTGGACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCACCCTGTTGTTTCTGGGGCTTTTTGCTCACCTCCTGGACTTT  245

seq1  CTTATTTGATTCCCTGTGACACACTCAGCCAGACATTAATGGAACATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTGATTCCCTGTGACACACTCAGCCAGACATTAATGGAACATGAT  295

seq1  TGTTTTAATTTTATCACTGGCTAATATTGTGTGCCTTCTTGTTTATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAATTTTATCACTGGCTAATATTGTGTGCCTTCTTGTTTATAGTA  345

seq1  GAAAAAGAAAGTGTCTTGCTATATTACCCACGCTGCCCCAGAACTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAGTGTCTTGCTATATTACCCACGCTGCCCCAGAACTCCTCC  395

seq1  TGGGCTCAGGCAGCCCTCCTGTCTCAGCCTTCAGAGCAGCTAGGACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCAGGCAGCCCTCCTGTCTCAGCCTTCAGAGCAGCTAGGACTGTA  445

seq1  GGTCCAAAGAGCATGCCTGGATTCTTTCAAAAGAAATTCTTGGGTTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAAGAGCATGCCTGGATTCTTTCAAAAGAAATTCTTGGGTTTGTC  495

seq1  TCTCTTTCTCTGTTTCTCCCACTGCCATCTGTTTCTCCCCCTATCATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCTGTTTCTCCCACTGCCATCTGTTTCTCCCCCTATCATTTC  545

seq1  TCTTTCCAGAATGACTGACGGGCCAACTTCTTGTTTCCAAATCCGATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGAATGACTGACGGGCCAACTTCTTGTTTCCAAATCCGATAAT  595

seq1  CATCATTCAAGCCTTATTTAATGTGAATTACTTGAAAAAGTCAAGTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCAAGCCTTATTTAATGTGAATTACTTGAAAAAGTCAAGTGCTA  645

seq1  TCATCTTAAGCTACAAGCACAGTGCTGGGTATAGTGAGGTATTAAATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTAAGCTACAAGCACAGTGCTGGGTATAGTGAGGTATTAAATAGT  695

seq1  GGCCTTTAGCTAGCTATTGTAATTGTAAAGATAATTTTAAATAACATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAGCTAGCTATTGTAATTGTAAAGATAATTTTAAATAACATTTA  745

seq1  TGATGCTGAACGTATGCCTCTCACTCGGGAACATGGTGATTTTCAACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGAACGTATGCCTCTCACTCGGGAACATGGTGATTTTCAACCTA  795

seq1  ACGTACCCTTTTACTATTGCACGTTGCCACATACTCCGTAGGTAGCCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACCCTTTTACTATTGCACGTTGCCACATACTCCGTAGGTAGCCTAT  845

seq1  CTCTCTATTGATTTTGCCCTGTGTTGGCAGAGGCACGTTAGTGTGATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATTGATTTTGCCCTGTGTTGGCAGAGGCACGTTAGTGTGATGTG  895

seq1  GGTGCTATTCATCTCATTTGGCTTTTCTTGCTTGGGCTTCTGATGGGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTATTCATCTCATTTGGCTTTTCTTGCTTGGGCTTCTGATGGGCAC  945

seq1  TAAACAAATAAATAAATAATTGCTCAAATCACTATAATGAACATCTACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATAAATAAATAATTGCTCAAATCACTATAATGAACATCTACCT  995

seq1  TTCTAAGAATTC  1012
      ||||||||||||
seq2  TTCTAAGAATTC  1007

seq1: chr13_106037159_106038196
seq2: B6Ng01-037G03.g_70_1103

seq1  GAATTCTCTCTGCTGGGGCATGAGGCGAGCCTAAAAGTGCATTTCTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGCTGGGGCATGAGGCGAGCCTAAAAGTGCATTTCTATCA  50

seq1  GAGACCTATACATCCTGAGTGAGTACATCTTTAATAAATGGCAATTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTATACATCCTGAGTGAGTACATCTTTAATAAATGGCAATTAGGG  100

seq1  AAGAGATTATGTTTGTTTGGAAGGACGTTTGGTAGCTGAATACAGCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATTATGTTTGTTTGGAAGGACGTTTGGTAGCTGAATACAGCACAG  150

seq1  TTTCATGCTTTCCCCAAAGACGATGTCAATGCATGCTTGTTGAACAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTTTCCCCAAAGACGATGTCAATGCATGCTTGTTGAACAGAGC  200

seq1  AGCGACTCTATCCAATCGGCTGCACTCTCTCTCTTGGAAGCAATACTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACTCTATCCAATCGGCTGCACTCTCTCTCTTGGAAGCAATACTCTA  250

seq1  ACTTCGGGCTTTAAGATTTTTGGTAAAATATTAATACTATTTCTATCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGGGCTTTAAGATTTTTGGTAAAATATTAATACTATTTCTATCATG  300

seq1  GTATATGCTATGGAAATATTTCTGGTTTAAACAATGCTTCACTTAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGCTATGGAAATATTTCTGGTTTAAACAATGCTTCACTTAAAATG  350

seq1  TCAAGTGACAGAAATTTAGTTTTCCCAGCCAATTATTTGAAACTCTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGACAGAAATTTAGTTTTCCCAGCCAATTATTTGAAACTCTGACA  400

seq1  AATATCATTAATAAGATAACAAACAGAAGCACTGTTGAGAAAAACTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTAATAAGATAACAAACAGAAGCACTGTTGAGAAAAACTGAAG  450

seq1  ATGAACATTAAAAAATGGCAAGGCATTGAATCCACAGACCGGGAGAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATTAAAAAATGGCAAGGCATTGAATCCACAGACCGGGAGAGTGG  500

seq1  CCAACATGGCAATAGAGGGGTCTGCCCGCAGGGACAGTGCAGTCCCTACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATGGCAATAGAGGGGTCTGCCCGCAGGGACAGTGCAGTCCCTACG  550

seq1  GCAGTCTCCAAAACCGCAGCAGCACAACCAAGAACTTCACTAAAAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCCAAAACCGCAGCAGCACAACCAAGAACTTCACTAAAAAATGA  600

seq1  GTTTTAATTACTAATAATTGTAACCATGATTTTTGTGTGTGGCTTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTACTAATAATTGTAACCATGATTTTTGTGTGTGGCTTTCTAA  650

seq1  TTAAAAAATAAAAATTTAAAAAGGCAAGAGGAGCACCTGGGCCCAGGGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATAAAAATTTAAAAAGGCAAGAGGAGCACCTGGGCCCAGGGCG  700

seq1  TGGCTCCGAGCCAGGGAAGTCACCTAGTAAGGCCACGTCTCTGGGTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGAGCCAGGGAAGTCACCTAGTAAGGCCACGTCTCTGGGTTCCT  750

seq1  CCCCGTACAATAGAGAACAAAAATGAGTTGTTTGGACGGATGTCACTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTACAATAGAGAACAAAAATGAGTTGTTTGGACGGATGTCACTACT  800

seq1  CAAGGCC-TTGCTACCTCAAGCAGGCATATGAGTAATGTTCATGGAATGA  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTTTGCTACCTCAAGCAGGCATATGAGTAATGTTCATGGAATGA  850

seq1  ATCTTGATTAAACATGGATGATTTGTCAAACTGTGCCATTATTTTATCTC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCTTGATTAAACATGGATGATTTGTCAAACTGTGCCATTA-TTTATCTC  899

seq1  AGCTATTAACTCTTGCTAGTATCTGCCTTTCTGTTTGAATCAGCGAGACA  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  AGCTATTAACTCTTGCTAGTATCTGCCTTTCTGTTTG-ATCAGCGAGACC  948

seq1  CACTTTATGAAGTTATCATTATTTCTAGCTC-TGACAATGATGTGTGTGA  998
      ||||||||| ||||||||||||||||||||| |||| |||||||| ||| 
seq2  CACTTTATG-AGTTATCATTATTTCTAGCTCTTGAC-ATGATGTGGGTG-  995

seq1  ATCATAAATTCACAGATTTTCTGCTTACCATATCCTCGGC  1038
      ||||  ||| || |||  || |||||||||||||||||||
seq2  ATCAATAATCCA-AGAGATTTTGCTTACCATATCCTCGGC  1034