BAC Information

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BAC

Clone NameB6Ng01-037H12
Chromosome1 (Build37)13 (Build37)
Map Location 30,453,641 - 30,454,72332,246,759 - 32,247,066
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037H12.bB6Ng01-037H12.g
ACCDH865321DH865322
length1,079202
definitionDH865321|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H12, 5' end.DH865322|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,453,641 - 30,454,723)(32,246,759 - 32,247,066)
sequence
gaattctctactgaggaataccaaatggctgagaagcacctgataaaatg
ctctacatcctcatcatcacagaaatgcaaatcaaaacaaccctgaagtt
ttgtctctaatagtcatggtgtaacagcatgccagcatgcagtcagacat
ggtgctggagagttctatatctctatcagtagacaccaaatagagagagt
gaccatgggcctggcttgagcttctgaaatctcaaagttcacccccagcc
ctcacgctatgacataactaccaccaacaaggccaaacatactccatccc
catcaaagtcacttttccaataatgctgaatcctaggagcctaaagaggc
tgttttcattcaaatcaccacagagaccttggaatcctacatgagatgtt
ttcatcaaaaccctcccctcaggcctcagaaaacactgaggaagaggagg
caacaaaagactgtaagagccagtagggatgtaagacacagaattttatt
aaaggtgagaaaacacacttgagcaaaacacatagagacaggaacccact
gcaaaacaatggagacactagagattccacaagtccagcttctctatccc
ttaatcccataattgtggtccatctgcctgtctgtctgaccaactgtctg
actaactccgtagttcctcaatttctgattttgaaagtgctgaaatcaat
atcctaggggaatgcaaagaactaagggactgctctttatgctttccaaa
tattatatatttatttactattcacagccttatgagacctgtagtgcaca
cttcacgttccacactgataaacagaagctaatagactataaaatccatc
ctagcttccacagctgttatgtgacagacctgagagtcaaacttcaggaa
aactttcaaagactgctacaggactcctttgattaaatggctgaaaacat
tcttaaaattctaatttgttcccagttagattagggaaagaggagttgta
ctagtataaatgttttgtgttttagtattatacctttagataatccattg
tatattgatcttatgtagagtgtgatgtt
ttttaaaacatcttttacacactgttttccacagtgatttgctaattcac
tttgcctgtaataacgtacaggtgttcatttctccaagtccttgctaata
tgttatgtttagtgttcttaccaatagctattttttactgtattgaggtg
ccacctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_30453641_30454723
seq2: B6Ng01-037H12.b_46_1124

seq1  GAATTCTCTACTGAGGAATACCAAATGGCTGAGAAGCACCTGATAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTGAGGAATACCAAATGGCTGAGAAGCACCTGATAAAATG  50

seq1  CTCTACATCCTCATCATCACAGAAATGCAAATCAAAACAACCCTGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATCCTCATCATCACAGAAATGCAAATCAAAACAACCCTGAAGTT  100

seq1  TTGTCTCTAATAGTCATGGTGTAACAGCATGCCAGCATGCAGTCAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTAATAGTCATGGTGTAACAGCATGCCAGCATGCAGTCAGACAT  150

seq1  GGTGCTGGAGAGTTCTATATCTCTATCAGTAGACACCAAATAGAGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGAGAGTTCTATATCTCTATCAGTAGACACCAAATAGAGAGAGT  200

seq1  GACCATGGGCCTGGCTTGAGCTTCTGAAATCTCAAAGTTCACCCCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGGCCTGGCTTGAGCTTCTGAAATCTCAAAGTTCACCCCCAGCC  250

seq1  CTCACGCTATGACATAACTACCACCAACAAGGCCAAACATACTCCATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTATGACATAACTACCACCAACAAGGCCAAACATACTCCATCCC  300

seq1  CATCAAAGTCACTTTTCCAATAATGCTGAATCCTAGGAGCCTAAAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGTCACTTTTCCAATAATGCTGAATCCTAGGAGCCTAAAGAGGC  350

seq1  TGTTTTCATTCAAATCACCACAGAGACCTTGGAATCCTACATGAGATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATTCAAATCACCACAGAGACCTTGGAATCCTACATGAGATGTT  400

seq1  TTCATCAAAACCCTCCCCTCAGGCCTCAGAAAACACTGAGGAAGAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAAACCCTCCCCTCAGGCCTCAGAAAACACTGAGGAAGAGGAGG  450

seq1  CAACAAAAGACTGTAAGAGCCAGTAGGGATGTAAGACACAGAATTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAGACTGTAAGAGCCAGTAGGGATGTAAGACACAGAATTTTATT  500

seq1  AAAGGTGAGAAAACACACTTGAGCAAAACACATAGAGACAGGAACCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGAGAAAACACACTTGAGCAAAACACATAGAGACAGGAACCCACT  550

seq1  GCAAAACAATGGAGACACTAGAGATTCCACAAGTCCAGCTTCTCTATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACAATGGAGACACTAGAGATTCCACAAGTCCAGCTTCTCTATCCC  600

seq1  TTAATCCCATAATTGTGGTCCATCTGCCTGTCTGTCTGACCAACTGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCATAATTGTGGTCCATCTGCCTGTCTGTCTGACCAACTGTCTG  650

seq1  ACTAACTCCGTAGTTCCTCAATTTCTGATTTTGAAAGTGCTGAAATCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTCCGTAGTTCCTCAATTTCTGATTTTGAAAGTGCTGAAATCAAT  700

seq1  ATCCTAGGGGAATGCAAAGAACTAAGGGACTGCTCTTTATGCTTTCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGGGAATGCAAAGAACTAAGGGACTGCTCTTTATGCTTTCCAAA  750

seq1  TATTATATATTTATTTACTATTCACAGCCTTATGAGACCTGTAGTGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATATTTATTTACTATTCACAGCCTTATGAGACCTGTAGTGCACA  800

seq1  CTTCACGTTCCACACTGATAAACAGAAGCTAATAGACTATAAAATCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACGTTCCACACTGATAAACAGAAGCTAATAGACTATAAAATCCATC  850

seq1  CTAGCTTCCACAGCTGTTATGTGACAGACCTGAGAGTCAAACTTCAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCCACAGCTGTTATGTGACAGACCTGAGAGTCAAACTTCAGGAA  900

seq1  AACTTTCAAAGACTGCTACAGGACTCCTTTGATTAAATGGCTGAAAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCAAAGACTGCTACAGGACTCCTTTGATTAAATGGCTGAAAACAT  950

seq1  TCTTAAAATTCTAATTTGTTCCCAGTTAGAATTAGGGAAAGA-GAGTTGT  999
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  TCTTAAAATTCTAATTTGTTCCCAGTTAG-ATTAGGGAAAGAGGAGTTGT  999

seq1  ACTAGTATAAATGTTTTGTGTTTTAGTAATTATACTTTTAGATAATCAAT  1049
      ||||||||||||||||||||||||||| ||||||| ||||||||||| ||
seq2  ACTAGTATAAATGTTTTGTGTTTTAGT-ATTATACCTTTAGATAATCCAT  1048

seq1  TGTATATTGAATCTTATGTTAGAGTGTGAATGTT  1083
      ||||||||| |||||||| ||||||||| |||||
seq2  TGTATATTG-ATCTTATG-TAGAGTGTG-ATGTT  1079

seq1: chr13_32246759_32247066
seq2: B6Ng01-037H12.g_223_277 (reverse)

seq1  ACACACACACACACAGAGAGAGGCTGAAAAGATGGCTTAGTGCTTTAAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCTGCTCTACAACCATGAGGACTGGAGCTTAGATGTCAGTGCCCATGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAGCTGGCCAATTTCTGAGGCTTAAAGGTTTTCATCCTAGATGAGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AACATGAAACCCAGGTACAGGAGGAGACGTTGCCTCAAAGGAAAAGGAAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGAGGACACCTGATACCCTCTTCTTGTCCTGCATGTGGTGAACTCAC  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATGCACGCGCGCGCGCACACACACACACACACACACACACGTACACAC-G  299
         ||| | | |||||||||||||||||||||||||||||  |||||| |
seq2  --ACACACACACGCGCACACACACACACACACACACACAC--ACACACTG  46

seq1  TGGTGGCAC  308
       ||||||||
seq2  AGGTGGCAC  55