BAC Information

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BAC

Clone NameB6Ng01-037M06
Chromosome13 (Build37)
Map Location 119,456,295 - 119,581,840
singlet/doubletdoublet
Overlap geneLOC100041278, Fgf10
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037M06.bB6Ng01-037M06.g
ACCDH865529DH865530
length1,1401,093
definitionDH865529|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M06, 5' end.DH865530|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,580,675 - 119,581,840)(119,456,295 - 119,457,396)
sequence
gaattcagagagcctcaggattctttcaagataaattgtttttctagctt
agtttaaatagcaaaggtaggcaaagctcttgtctccacatttgtttgaa
ctcatatgtgctattttaaagtacagttcatcatctcttaaatattttta
actccatgcatgtatgtatgtatgcatgtatatacatttgtatatatgta
tgtatgcaggtatacatatatatgtatatatggatgtatacgtgcataca
tatataaactaacttagggctagctactcattgatataaaaatgttacgt
ttactttattgaataatcaatccaagaattaacaatgctctagttattag
aattgagccatagaacactgatccctccactctgtccacaaacttgcttg
agccctggaatcaacttgcattactacagtttttttttttttttcttttc
tttcctgcctacttttcaaatcaaattcgttggtcttttccatgccctgg
aagtcaacgtttgcagctcctggctttcctccaagagcctctcattgttg
cacaagccatccttgttttcaattcattcttctttatccactgtgtaaac
taggtggacctgagtagttaggagaacccgaaagcatttggttgttatta
gggtaaggatagccggctcacacatgtaaaacattaaagaaaccttacaa
atgtttgagtaatttttttttctgttgttgttgtttggggctgtggggca
tttaaccacatcctgccatgcacacagccctggagctgatctcattacca
ggtatagttttaggctaataaaaaaaaaaaagaaaaaaaaaggaaaaaaa
aagaaaggaaagaaaagaaaagagaggagaagaagaaaggaataaataag
acagtacttttttctctttccagcatttttattggctttattaaatgtaa
cataatatacactgtcagccttgaggataggaggagggaagcgattctgt
tctttaggagtctgatgtcacagtcaaatgctctgtaccgtggctaacac
ttcagcatgggtggagcagtgcccaacttccacgggagggcgaactccaa
atactttctttttacaccaaatttgagactgaactctctt
gaattccaaatacttctctgaaagtatatgcagtgtgtgttgtgggatga
ggtttgcagtgtttcagtgatgtaccataacctccttcccttaagaccag
aagtctttgtcttcactaagtcaccaaacacattggccccatagactggg
caaagcgatctgcttgggatatctcagagttgcaatcttgctaatcattg
gtggtgaaggcagagtgagctgctgccctgcactggactgtcctaagaca
actcttacatgtcgatcttacgaatatatcttgtggagcaagtatcaacc
acatggatggcataggactatggccattctaactcttaccccagaaaact
accttaaaggggaaaaaaagaaggactacaatactgttttgtgtggtcct
gattaccagcaaaggcaaaagctgtgggaggccccataaaaccagaaaga
ggaaggcattgtcagcctgcatggaagcttcaagcaagagatccagaatc
tcaggttgaagtaggactgttagctttgactatctggcagacaagcagag
catgaagccagactgctcaggaagagctgccccaccccctctcctcccta
cccagtggcttccaccacaaagtcctgtcaggataagccaataaccagcc
aggatctaagaaatgataaaaagaatacttacttgttagagtaatgctgc
aaaaatagaattaagatattatgtaaaattagatctaacaaacaactaag
aagctacagtaatggtgaaccttcaggcagttaatgactttgaaatagga
cctataagattattatcatttcgaagactatttacaaaatttttctctaa
aggtttcaaaacttccaaatattgtcatgggttaaaaagtatacgtaaat
gaatgtgtggaggttgaaaatactgaaatggagtataattaaaatgtgtg
gatatatttacatatgtccagttgtttacggatttaattcaggagttttg
tggaaaggagatatgatgcccattcaactcaaattagaacagccaacttg
acttccaaggcaataggagggatgcaagagcagaactcagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_119580675_119581840
seq2: B6Ng01-037M06.b_45_1184 (reverse)

seq1  AAGA-AGTTCAGTCCTAAATTTTGTGTGTTAAAAAAAGAAAAGATTTTGT  49
      |||| |||||||||  |||||| ||||     |||||||||  ||||   
seq2  AAGAGAGTTCAGTCTCAAATTTGGTGT-----AAAAAGAAAGTATTT--G  43

seq1  GAGTTCTGCCTCCGTGGGAAGTGTGGGCACTGCTCCA-CCATGCTGAAGT  98
      ||||||  |||||   |||||| |||||||||||||| ||||||||||  
seq2  GAGTTCGCCCTCCCGTGGAAGT-TGGGCACTGCTCCACCCATGCTGAA--  90

seq1  GTGTTAGCCACGGGTACAGAGCATATGACTGTTGACATCAGACTCCTTAA  148
      ||||||||||| |||||||||||| |||||| |||||||||||||| |||
seq2  GTGTTAGCCAC-GGTACAGAGCATTTGACTG-TGACATCAGACTCC-TAA  137

seq1  AGATACAGAATCGCTTCCCTCCTCCTAATCCTCAAAAGGCTGAACAGTGT  198
      ||| |||||||||||||||||||||| ||||||  ||||||| |||||||
seq2  AGA-ACAGAATCGCTTCCCTCCTCCT-ATCCTC--AAGGCTG-ACAGTGT  182

seq1  ATATTATGTTACATTTAAATAAAGGCAATAAAAATGCTGGGAAAAGAGAA  248
      |||||||||||||||| ||||||| |||||||||||||||  ||||||||
seq2  ATATTATGTTACATTT-AATAAAGCCAATAAAAATGCTGG--AAAGAGAA  229

seq1  TAAAAGTACTGTTCTTATTTTATTTCCTTTCTTTCTTCTCTTCTCTTTTC  298
       |||||||||| ||||||||   |||||||| |||||||| |||||||||
seq2  -AAAAGTACTG-TCTTATTT--ATTCCTTTC-TTCTTCTCCTCTCTTTTC  274

seq1  TTTTCTTTCCTTTTCTTTTTTTTTTCCTTTTTTTTTCTTTTTTTTTTTTA  348
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCTTT--CTTTTTTTTTCCTTTTTTTTTCTTTTTTTTTTTTA  322

seq1  TTAGCCTAAAACTATACCTGGTAATGAGATCAGCTCCAGGGCTGTGTGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTAAAACTATACCTGGTAATGAGATCAGCTCCAGGGCTGTGTGCA  372

seq1  TGGCAGGATGTGGTTAAATGCCCCACAGCCCCAAACAACAACAACAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGATGTGGTTAAATGCCCCACAGCCCCAAACAACAACAACAGAAA  422

seq1  AAAAAATTACTCAAACATTTGTAAGGTTTCTTTAATGTTTTACATGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTACTCAAACATTTGTAAGGTTTCTTTAATGTTTTACATGTGTG  472

seq1  AGCCGGCTATCCTTACCCTAATAACAACCAAATGCTTTCGGGTTCTCCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGCTATCCTTACCCTAATAACAACCAAATGCTTTCGGGTTCTCCTA  522

seq1  ACTACTCAGGTCCACCTAGTTTACACAGTGGATAAAGAAGAATGAATTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCAGGTCCACCTAGTTTACACAGTGGATAAAGAAGAATGAATTGA  572

seq1  AAACAAGGATGGCTTGTGCAACAATGAGAGGCTCTTGGAGGAAAGCCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGATGGCTTGTGCAACAATGAGAGGCTCTTGGAGGAAAGCCAGG  622

seq1  AGCTGCAAACGTTGACTTCCAGGGCATGGAAAAGACCAACGAATTTGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAACGTTGACTTCCAGGGCATGGAAAAGACCAACGAATTTGATT  672

seq1  TGAAAAGTAGGCAGGAAAGAAAAGAAAAAAAAAAAAAAACTGTAGTAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTAGGCAGGAAAGAAAAGAAAAAAAAAAAAAAACTGTAGTAATG  722

seq1  CAAGTTGATTCCAGGGCTCAAGCAAGTTTGTGGACAGAGTGGAGGGATCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGATTCCAGGGCTCAAGCAAGTTTGTGGACAGAGTGGAGGGATCA  772

seq1  GTGTTCTATGGCTCAATTCTAATAACTAGAGCATTGTTAATTCTTGGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTATGGCTCAATTCTAATAACTAGAGCATTGTTAATTCTTGGATT  822

seq1  GATTATTCAATAAAGTAAACGTAACATTTTTATATCAATGAGTAGCTAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCAATAAAGTAAACGTAACATTTTTATATCAATGAGTAGCTAGC  872

seq1  CCTAAGTTAGTTTATATATGTATGCACGTATACATCCATATATACATATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTTAGTTTATATATGTATGCACGTATACATCCATATATACATATA  922

seq1  TATGTATACCTGCATACATACATATATACAAATGTATATACATGCATACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATACCTGCATACATACATATATACAAATGTATATACATGCATACA  972

seq1  TACATACATGCATGGAGTTAAAAATATTTAAGAGATGATGAACTGTACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATGCATGGAGTTAAAAATATTTAAGAGATGATGAACTGTACTT  1022

seq1  TAAAATAGCACATATGAGTTCAAACAAATGTGGAGACAAGAGCTTTGCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGCACATATGAGTTCAAACAAATGTGGAGACAAGAGCTTTGCCT  1072

seq1  ACCTTTGCTATTTAAACTAAGCTAGAAAAACAATTTATCTTGAAAGAATC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGCTATTTAAACTAAGCTAGAAAAACAATTTATCTTGAAAGAATC  1122

seq1  CTGAGGCTCTCTGAATTC  1166
      ||||||||||||||||||
seq2  CTGAGGCTCTCTGAATTC  1140

seq1: chr13_119456295_119457396
seq2: B6Ng01-037M06.g_68_1160

seq1  GAATTCCAAATACTTCTCTGAAAGTATATGCAGTGTGTGTTGTGGGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATACTTCTCTGAAAGTATATGCAGTGTGTGTTGTGGGATGA  50

seq1  GGTTTGCAGTGTTTCAGTGATGTACCATAACCTCCTTCCCTTAAGACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCAGTGTTTCAGTGATGTACCATAACCTCCTTCCCTTAAGACCAG  100

seq1  AAGTCTTTGTCTTCACTAAGTCACCAAACACATTGGCCCCATAGACTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTGTCTTCACTAAGTCACCAAACACATTGGCCCCATAGACTGGG  150

seq1  CAAAGCGATCTGCTTGGGATATCTCAGAGTTGCAATCTTGCTAATCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGATCTGCTTGGGATATCTCAGAGTTGCAATCTTGCTAATCATTG  200

seq1  GTGGTGAAGGCAGAGTGAGCTGCTGCCCTGCACTGGACTGTCCTAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAAGGCAGAGTGAGCTGCTGCCCTGCACTGGACTGTCCTAAGACA  250

seq1  ACTCTTACATGTCGATCTTACGAATATATCTTGTGGAGCAAGTATCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTACATGTCGATCTTACGAATATATCTTGTGGAGCAAGTATCAACC  300

seq1  ACATGGATGGCATAGGACTATGGCCATTCTAACTCTTACCCCAGAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGGCATAGGACTATGGCCATTCTAACTCTTACCCCAGAAAACT  350

seq1  ACCTTAAAGGGGAAAAAAAGAAGGACTACAATACTGTTTTGTGTGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAGGGGAAAAAAAGAAGGACTACAATACTGTTTTGTGTGGTCCT  400

seq1  GATTACCAGCAAAGGCAAAAGCTGTGGGAGGCCCCATAAAACCAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCAGCAAAGGCAAAAGCTGTGGGAGGCCCCATAAAACCAGAAAGA  450

seq1  GGAAGGCATTGTCAGCCTGCATGGAAGCTTCAAGCAAGAGATCCAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCATTGTCAGCCTGCATGGAAGCTTCAAGCAAGAGATCCAGAATC  500

seq1  TCAGGTTGAAGTAGGACTGTTAGCTTTGACTATCTGGCAGACAAGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTGAAGTAGGACTGTTAGCTTTGACTATCTGGCAGACAAGCAGAG  550

seq1  CATGAAGCCAGACTGCTCAGGAAGAGCTGCCCCACCCCCTCTCCTCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCCAGACTGCTCAGGAAGAGCTGCCCCACCCCCTCTCCTCCCTA  600

seq1  CCCAGTGGCTTCCACCACAAAGTCCTGTCAGGATAAGCCAATAACCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGGCTTCCACCACAAAGTCCTGTCAGGATAAGCCAATAACCAGCC  650

seq1  AGGATCTAAGAAATGATAAAAAGAATACTTACTTGTTAGAGTAATGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTAAGAAATGATAAAAAGAATACTTACTTGTTAGAGTAATGCTGC  700

seq1  AAAAATAGAATTAAGATATTATGTAAAATTAGATCTAACAAACAACTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAATTAAGATATTATGTAAAATTAGATCTAACAAACAACTAAG  750

seq1  AAGCTACAGTAATGGTGAACCTTCAGGCAGTTAATGACTTTGAAATAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAGTAATGGTGAACCTTCAGGCAGTTAATGACTTTGAAATAGGA  800

seq1  CCTATAAGATTATTATCATTTCGAAGACTATTTACAAAATTTTTCTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGATTATTATCATTTCGAAGACTATTTACAAAATTTTTCTCTAA  850

seq1  AGGTTTCAAAACTTCCAAATA-TGTCATGGGTTAAAAAGTAATACGTAAA  899
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  AGGTTTCAAAACTTCCAAATATTGTCATGGGTTAAAAAGT-ATACGTAAA  899

seq1  TGAATGTGTGGAGGTTGAAAATACTGAAAT-GAGTATAAATTAAAATGTG  948
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  TGAATGTGTGGAGGTTGAAAATACTGAAATGGAGTAT-AATTAAAATGTG  948

seq1  TGGAGTATATTTACATATTGTTCCAGGTGTTTACGGATTTAAATCAAGAA  998
      |||| |||||||||||||   ||||| ||||||||||||||| ||| || 
seq2  TGGA-TATATTTACATAT--GTCCAGTTGTTTACGGATTTAATTCAGGAG  995

seq1  GTTTGTGGAAAGGAGAATAATGATGCCACATTCAACTCCAAATTTAGAAC  1048
       |||||||||||||||   |||||||| ||||||||||  || |||||||
seq2  TTTTGTGGAAAGGAGA--TATGATGCC-CATTCAACTC--AAATTAGAAC  1040

seq1  AGGCAAACTGGACTCACAA-GCAATAAGAAGGAAGCAAGAGCAGAACTCA  1097
      | || |||| ||||  ||| |||||| || ||| ||||||||||||||||
seq2  A-GCCAACTTGACTTCCAAGGCAATAGGAGGGATGCAAGAGCAGAACTCA  1089

seq1  TGTGG  1102
       ||||
seq2  -GTGG  1093