BAC Information

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BAC

Clone NameB6Ng01-038A02
Chromosome13 (Build37)
Map Location 13,542,247 - 13,595,727
singlet/doubletdoublet
Overlap geneNid1
Upstream geneLgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960
Downstream geneLyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A02.bB6Ng01-038A02.g
ACCDH865703DH865704
length1,151821
definitionDH865703|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A02, 5' end.DH865704|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,542,247 - 13,543,423)(13,594,910 - 13,595,727)
sequence
gaattcaggctttcaggtttgtgtgttcagttctttgatcactgaaccct
ctccccagtggccctctcctcttctccttattcttgttgctgatgagttt
ttaaaagatttattatattcttgtgtgtgtgtgtgtgtgtgtatgcgtat
gcatgcgcgtgcacgtgcgcgcgcgcgtgcgctactgaatgcagttaccc
tcagaggccagaagagggtggctggagttacagctaggtatgagcttcct
gacatggcttctgagaattacactttacagtatcagtgtgtgctcttaac
cactgagccatctctctaaccttatgtgcagctccgatatgttacttggg
ggacagattggaaggagtggccgtccagagaaggaccagagtcagctgat
gctcagtattgagctttgtatactaagagagggagagatcaggattttaa
atatgtatatttttttaagcttttgttttaaggggtgatcccagccttca
aatgctgggattacatgagagagttagtacactcagtttgagaatttgcg
ttttgatattgagtttcaaagaaacaccaccaacaaaagatgaacaaaaa
ccatcatcatcatcatcaacaaaacccaaaccaaaccaaatacatagaac
ccctccctcccaagagcaacacaaaccattatactaataccacacctatc
cagatcagtagttccttaccaccaagttatgctcaagctgcttaaaaatt
cttcaatatctagggggtggggtgcgagcctttagtcccagcactcagga
agcagagtcagacagacctctaagagttcaagcatcctggttcttcagag
caagtcccaggacagccagagatacacagagtttttctgccttgaataaa
ctaaaaacaaaacaaacaaataaacaaaccacacacaagaaaaaaatcaa
gaaaaaattcttgatattccaaagctgccttttacaagccttattaagcc
agagattcagaacgagctcacaggacattgtgtttcttccctttgttccc
tcttgttaagatcactgccttttgtccgtagatgttctagggctcattcc
catgtctctttgtctaaagtttactgtattccataggatttcgggaaatg
g
gaattctctgtgagagttgatcctggctagttggattccaagtgagaact
agggagaggagagatgtgttaaggtagggaaaagaaactacccctaccaa
agatgctgtattttgaaataactctttaacattgccttggggaatagact
ctactttcagatttgggtgtggtgatacacagttataccccagggccaga
gagaaagaggcaagaaaagcaggagttgcagactacgtaaggctgccaaa
cattggtttaaagtaaatagtagccaaagtagctcaattgggagaatgtt
agactgacatattaattcaattaactaagcaaactgagtggtgatgcatg
aacataatcctgacatggaggaggcagaaagcaggaagattatgagctca
aggccatccacagctacttaatgagggtagcatggttcccatgaaatccc
atctcaaaaataaaataaataatcttcaacttttgggtgagtatccgtca
atatagtgggtttctggactattccttccatccactgcctttgattaaac
ccccatgcagcacacggtagagcactctgtgagaagccagtgcaggttta
gaagctaaaaggaagaaatagaatgttgagtttggttttatgatgcacaa
aggtggaccatgtaagcttccagagaaagggcacaggcctctgcctttgt
ttcagtttaattatcctgagacttaacctcagccagaaagtccctggttt
aatgactcaaactggcctatggaaaacttctgaggagatgaaaaggacag
agtggagaggcaaaagacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13542247_13543423
seq2: B6Ng01-038A02.b_45_1195

seq1  GAATTCAGGCTTTCAGGTTTGTGTGTTCAGTTCTTTGATCACTGAACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTTCAGGTTTGTGTGTTCAGTTCTTTGATCACTGAACCCT  50

seq1  CTCCCCAGTGGCCCTCTCCTCTTCTCCTTATTCTTGTTGCTGATGAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGTGGCCCTCTCCTCTTCTCCTTATTCTTGTTGCTGATGAGTTT  100

seq1  TTAAAAGATTTATTATATTCTTGTGTGTGTGTGTGTGTGTGTATGCGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGATTTATTATATTCTTGTGTGTGTGTGTGTGTGTGTATGCGTAT  150

seq1  GCATGCGCGTGCACGTGCGCGCGCGCGTGCGCTACTGAATGCAGTTACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCGCGTGCACGTGCGCGCGCGCGTGCGCTACTGAATGCAGTTACCC  200

seq1  TCAGAGGCCAGAAGAGGGTGGCTGGAGTTACAGCTAGGTATGAGCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCCAGAAGAGGGTGGCTGGAGTTACAGCTAGGTATGAGCTTCCT  250

seq1  GACATGGCTTCTGAGAATTACACTTTACAGTATCAGTGTGTGCTCTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCTTCTGAGAATTACACTTTACAGTATCAGTGTGTGCTCTTAAC  300

seq1  CACTGAGCCATCTCTCTAACCTTATGTGCAGCTCCGATATGTTACTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTCTCTAACCTTATGTGCAGCTCCGATATGTTACTTGGG  350

seq1  GGACAGATTGGAAGGAGTGGCCGTCCAGAGAAGGACCAGAGTCAGCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATTGGAAGGAGTGGCCGTCCAGAGAAGGACCAGAGTCAGCTGAT  400

seq1  GCTCAGTATTGAGCTTTGTATACTAAGAGAGGGAGAGATCAGGATTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTATTGAGCTTTGTATACTAAGAGAGGGAGAGATCAGGATTTTAA  450

seq1  ATATGTATATTTTTTTAAGCTTTTGTTTTAAGGGGTGATCCCAGCCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATTTTTTTAAGCTTTTGTTTTAAGGGGTGATCCCAGCCTTCA  500

seq1  AATGCTGGGATTACATGAGAGAGTTAGTACACTCAGTTTGAGAATTTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGGATTACATGAGAGAGTTAGTACACTCAGTTTGAGAATTTGCG  550

seq1  TTTTGATATTGAGTTTCAAAGAAACACCACCAACAAAAGATGAACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATATTGAGTTTCAAAGAAACACCACCAACAAAAGATGAACAAAAA  600

seq1  CCATCATCATCATCATCAACAAAACCCAAACCAAACCAAATACATAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCATCATCATCAACAAAACCCAAACCAAACCAAATACATAGAAC  650

seq1  CCCTCCCTCCCAAGAGCAACACAAACCATTATACTAATACCACACCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTCCCAAGAGCAACACAAACCATTATACTAATACCACACCTATC  700

seq1  CAGATCAGTAGTTCCTTACCACCAAGTTATGCTCAAGCTGCTTAAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGTAGTTCCTTACCACCAAGTTATGCTCAAGCTGCTTAAAAATT  750

seq1  CTTCAATATCTAGGGGGTGGGGTGCGAGCCTTTAGTCCCAGCACTCAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATATCTAGGGGGTGGGGTGCGAGCCTTTAGTCCCAGCACTCAGGA  800

seq1  AGCAGAGTCAGACAGACCTCTAAGAGTTCAAGCATCCTGGTTCTTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTCAGACAGACCTCTAAGAGTTCAAGCATCCTGGTTCTTCAGAG  850

seq1  CAAGTTCCAGGACAGCCAGAGATACACAGAGTTTTTCTGCCTTGAATAAA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGTCCCAGGACAGCCAGAGATACACAGAGTTTTTCTGCCTTGAAT-AA  899

seq1  ACTAAAAACAAAACAAAACAAAATAAACAAAACCACACACAAGAAAAAAA  950
      |||||||||||||||||   |||||||| |||||||||||||| ||||||
seq2  ACTAAAAACAAAACAAA--CAAATAAAC-AAACCACACACAAG-AAAAAA  945

seq1  ATCAAAGAAAAAAATTCTTGAATATTCCCAAAGCTGCCTTTTACAAGCCT  1000
      |||||   |||||||||||| ||||| |||||||||||||||||||||||
seq2  ATCAA--GAAAAAATTCTTG-ATATT-CCAAAGCTGCCTTTTACAAGCCT  991

seq1  TATTAAGCCAGAGATTCAGAAACGAGCTCACAGGACAATTGTTGTGTCTT  1050
      ||||||||||||||||||| |||||||||||||||| |||| ||| ||||
seq2  TATTAAGCCAGAGATTCAG-AACGAGCTCACAGGAC-ATTG-TGTTTCTT  1038

seq1  CCCCTTTGTTCACTCTTGTTAAAGAATCACTGCCTTTTGTCCTGTAGAAT  1100
       |||||||||| ||||||||||   ||||||||||||||||| |||| ||
seq2  -CCCTTTGTTCCCTCTTGTTAA--GATCACTGCCTTTTGTCC-GTAG-AT  1083

seq1  GTTCTAGGTCTGCATTCCACTGTTTCTTTGTCCTAAAGTTTAACTTGTTA  1150
      |||||||| || ||||||  ||| ||||||| ||||||||| |||   ||
seq2  GTTCTAGGGCT-CATTCCCATGTCTCTTTGT-CTAAAGTTT-ACT--GTA  1128

seq1  TTCCATTATGGTATTTCCTGGAAATGG  1177
      ||||   || | |||| | ||||||||
seq2  TTCC---ATAGGATTT-CGGGAAATGG  1151

seq1: chr13_13594910_13595727
seq2: B6Ng01-038A02.g_69_889 (reverse)

seq1  CAGGTCTTTTGCCTCTTCACTCTGTCCTTTTCATCTCCTCTGAAGTTTTC  50
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CAGGTCTTTTGCCTCTCCACTCTGTCCTTTTCATCTCCTCAGAAGTTTTC  50

seq1  CATAGGCCAG-TTGAGTCATTAAACCAGGGACTTTCTGGCTGAGGTTAAG  99
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCAGTTTGAGTCATTAAACCAGGGACTTTCTGGCTGAGGTTAAG  100

seq1  TCTCAGGATAATTAAACTGAAAC-AAGGCAGAGGCCTGTGCCCTTTCTCT  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCAGGATAATTAAACTGAAACAAAGGCAGAGGCCTGTGCCCTTTCTCT  150

seq1  GGAAGCTTACATGGTCCACCTTTGTGCATCATAAAACCAAACTCAACATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTACATGGTCCACCTTTGTGCATCATAAAACCAAACTCAACATT  200

seq1  CTATTTCTTCC-TTTAGCTTCTAAACCTGCACTGGCTTCTCACAGAGTGC  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTTCCTTTTAGCTTCTAAACCTGCACTGGCTTCTCACAGAGTGC  250

seq1  TCTACCGTGTGCTGCATGGGGGTTTAATCAAAGGCAGTGGATGGAAGGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCGTGTGCTGCATGGGGGTTTAATCAAAGGCAGTGGATGGAAGGAA  300

seq1  TAGTCCAGAAACCCACTATATTGACGGATACTCACCCAAAAGTTGAAGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAGAAACCCACTATATTGACGGATACTCACCCAAAAGTTGAAGAT  350

seq1  TATTTATTTTATTTTTGAGATGGGATTTCATGGGAACCATGCTACCCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTATTTTTGAGATGGGATTTCATGGGAACCATGCTACCCTCA  400

seq1  TTAAGTAGCTGTGGATGGCCTTGAGCTCATAATCTTCCTGCTTTCTGCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGCTGTGGATGGCCTTGAGCTCATAATCTTCCTGCTTTCTGCCT  450

seq1  CCTCCATGTCAGGATTATGTTCATGCATCACCACTCAGTTTGCTTAGTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGTCAGGATTATGTTCATGCATCACCACTCAGTTTGCTTAGTTA  500

seq1  ATTGAATTAATATGTCAGTCTAACATTCTCCCAATTGAGCTACTTTGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTAATATGTCAGTCTAACATTCTCCCAATTGAGCTACTTTGGCT  550

seq1  ACTATTTACTTTAAACCAATGTTTGGCAGCCTTACGTAGTCTGCAACTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTACTTTAAACCAATGTTTGGCAGCCTTACGTAGTCTGCAACTCC  600

seq1  TGCTTTTCTTGCCTCTTTCTCTCTGGCCCTGGGGTATAACTGTGTATCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCTTGCCTCTTTCTCTCTGGCCCTGGGGTATAACTGTGTATCAC  650

seq1  CACACCCAAATCTGAAAGTAGAGTCTATTCCCCAAGGCAATGTTAAAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAAATCTGAAAGTAGAGTCTATTCCCCAAGGCAATGTTAAAGAG  700

seq1  TTATTTCAAAATACAGCATCTTTGGTAGGGGTAGTTTCTTTTCCCTACCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAAAATACAGCATCTTTGGTAGGGGTAGTTTCTTTTCCCTACCT  750

seq1  TAACACATCTCTCCTCTCCCTAGTTCTCACTTGGAATCCAACTAGCCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATCTCTCCTCTCCCTAGTTCTCACTTGGAATCCAACTAGCCAGG  800

seq1  ATCAACTCTCACAGAGAATTC  818
      |||||||||||||||||||||
seq2  ATCAACTCTCACAGAGAATTC  821