BAC Information

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BAC

Clone NameB6Ng01-038L04
Chromosome13 (Build37)
Map Location 60,646,111 - 60,790,466
singlet/doubletdoublet
Overlap geneDapk1
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneLOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038L04.bB6Ng01-038L04.g
ACCDH866181DH866182
length1,168401
definitionDH866181|Mus musculus domesticus DNA, BAC clone: B6Ng01-038L04, 5' end.DH866182|Mus musculus domesticus DNA, BAC clone: B6Ng01-038L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,646,111 - 60,647,300)(60,790,060 - 60,790,466)
sequence
gaattctttcagtgtactgcatgcattctgcttttattaaggtcacgcag
aaaaggaacaaatcatggcccgtatttcagctagtgagctctaagccctg
aaggcaaataaaggaattgttgaaatgtccaaggaagggaggaatctggc
cttagaaaccctcagtctcatggatgccattaatttctggacatgttcaa
tacaaatgtgatttagcaggaacacaaggggcttcagaaaggaaagtaca
tcactgaaactcagaagctcagagccagaagcaagctaaacaagggcttt
gttcaacttaattctttccttggaaaacacattcaaaagtggttacctca
ggccacagaagttaagccaggtcacccaggacagtcagcccatggtatca
cacagaacgtcgttcaccttttctgccccaagagtgcatcttggcttaga
tcaataaccaagccaaccacttgcttgggcatctcctcctgtttggcgct
cctgacatccacgttgtgattttgtagatgtccagctgccttcaggtcca
ggaacagcttcctcataggaacaattaatgtcactcacctgctataaaca
ctggctcaaatcttggcagaacccatcttcctgatgggaccattttcaag
atgttcctgagaaactggaaggctgggtgcttgctgccaagaaggaagtc
cctggtgacagggtccaagcttttcagtgaagtgggatttggcactgagg
tgtgctttgcagcttccaggctctacaaggagctggctagaggaggatgc
taaaaaaaattgggaaattgctttcttctttacatgacttacttcaggaa
taattgatagaggctcatcaccataactaaacattgtgttaagcatcctt
gaggacatcagctttctgaaatggggcactattaaggcaagtggcagtgt
agggcttcataattatgattactagtcacgatgaatacagataacctgta
atcagagacagatggtatagaggcactcttcttttgattcaataagcact
gagaaatcagtttgatttggattgtggttgactgctaagtaccctttaag
caggaaagtgacagcccatgcctaaattccttgacagatctgcgaagagc
tttcctgctatggtcaaa
catgtctcctatgggggtcccacccggggattcctcactgtgcctatgca
agcattctaggatcaggaagaagacaaaaaccatagtgagcgacggatgc
gtggtgtgcatttgaaactgccggctgccgaagcagagttcagctccagg
tacataaggcacatctgcctgtgagagacaaggaggctgtgtatgatagg
atctacgtcactcacccaacactgaaaatgaacagcaccaacagctctaa
tgttcaaatatagccacatgcggacaactctgctcacgggaacgaaaggt
aagagaggttccactaccagaaaagtgtctcgtgggctgtgggtgtgcct
gggcaggaagagcttccttgtgatgtagagaggtaggggtggaggaatgg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60646111_60647300
seq2: B6Ng01-038L04.b_47_1214

seq1  GAATTCTTTCAGTGTACTGCATGCATTCTGCTTTTATTAAGGTCACGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTGTACTGCATGCATTCTGCTTTTATTAAGGTCACGCAG  50

seq1  AAAAGGAACAAATCATGGCCCGTATTTCAGCTAGTGAGCTCTAAGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAACAAATCATGGCCCGTATTTCAGCTAGTGAGCTCTAAGCCCTG  100

seq1  AAGGCAAATAAAGGAATTGTTGAAATGTCCAAGGAAGGGAGGAATCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAATAAAGGAATTGTTGAAATGTCCAAGGAAGGGAGGAATCTGGC  150

seq1  CTTAGAAACCCTCAGTCTCATGGATGCCATTAATTTCTGGACATGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACCCTCAGTCTCATGGATGCCATTAATTTCTGGACATGTTCAA  200

seq1  TACAAATGTGATTTAGCAGGAACACAAGGGGCTTCAGAAAGGAAAGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTGATTTAGCAGGAACACAAGGGGCTTCAGAAAGGAAAGTACA  250

seq1  TCACTGAAACTCAGAAGCTCAGAGCCAGAAGCAAGCTAAACAAGGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAACTCAGAAGCTCAGAGCCAGAAGCAAGCTAAACAAGGGCTTT  300

seq1  GTTCAACTTAATTCTTTCCTTGGAAAACACATTCAAAAGTGGTTACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACTTAATTCTTTCCTTGGAAAACACATTCAAAAGTGGTTACCTCA  350

seq1  GGCCACAGAAGTTAAGCCAGGTCACCCAGGACAGTCAGCCCATGGTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGAAGTTAAGCCAGGTCACCCAGGACAGTCAGCCCATGGTATCA  400

seq1  CACAGAACGTCGTTCACCTTTTCTGCCCCAAGAGTGCATCTTGGCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACGTCGTTCACCTTTTCTGCCCCAAGAGTGCATCTTGGCTTAGA  450

seq1  TCAATAACCAAGCCAACCACTTGCTTGGGCATCTCCTCCTGTTTGGCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACCAAGCCAACCACTTGCTTGGGCATCTCCTCCTGTTTGGCGCT  500

seq1  CCTGACATCCACGTTGTGATTTTGTAGATGTCCAGCTGCCTTCAGGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATCCACGTTGTGATTTTGTAGATGTCCAGCTGCCTTCAGGTCCA  550

seq1  GGAACAGCTTCCTCATAGGAACAATTAATGTCACTCACCTGCTATAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCTTCCTCATAGGAACAATTAATGTCACTCACCTGCTATAAACA  600

seq1  CTGGCTCAAATCTTGGCAGAACCCATCTTCCTGATGGGACCATTTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCAAATCTTGGCAGAACCCATCTTCCTGATGGGACCATTTTCAAG  650

seq1  ATGTTCCTGAGAAACTGGAAGGCTGGGTGCTTGCTGCCAAGAAGGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTGAGAAACTGGAAGGCTGGGTGCTTGCTGCCAAGAAGGAAGTC  700

seq1  CCTGGTGACAGGGTCCAAGCTTTTCAGTGAAGTGGGATTTGGCACTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACAGGGTCCAAGCTTTTCAGTGAAGTGGGATTTGGCACTGAGG  750

seq1  TGTGCTTTGCAGCTTCCAGGCTCTACAAGGAGCTGGCTAGAGGAGGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGCAGCTTCCAGGCTCTACAAGGAGCTGGCTAGAGGAGGATGC  800

seq1  TAAAAAAAATTGGGAAATTGCTTTCTTCTTTACATGACTTACTTCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATTGGGAAATTGCTTTCTTCTTTACATGACTTACTTCAGGAA  850

seq1  TAATTGATAGAGGCTCATCACCATAACTAAACATTGTGTTAAGCATCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAGAGGCTCATCACCATAACTAAACATTGTGTTAAGCATCCTT  900

seq1  GAGGACATCAGCTTTCTGAAATGGGGCACTATTAAGGCAAGTGGCAGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACATCAGCTTTCTGAAATGGGGCACTATTAAGGCAAGTGGCAGTGT  950

seq1  AGGGCTTCATAAATTATGAATTACTAGTCACGGATGAATACAGATAACCT  1000
      |||||||||| ||||||| |||||||||||| ||||||||||||||||||
seq2  AGGGCTTCAT-AATTATG-ATTACTAGTCAC-GATGAATACAGATAACCT  997

seq1  GTAATCAGGAGACAGATGGTAATTAGAGGCAACTCTTCTTTTGATTCAAT  1050
      ||||||| |||||||||||||  ||||||| |||||||||||||||||| 
seq2  GTAATCA-GAGACAGATGGTA--TAGAGGC-ACTCTTCTTTTGATTCAA-  1042

seq1  TAAGCACCTGAGAAAATCAGTTTTGATTTGGATTTGTGTTTGACTGCTAC  1100
      |||||| ||||| ||||||| ||||||||||| ||||| |||||||||| 
seq2  TAAGCA-CTGAG-AAATCAG-TTTGATTTGGA-TTGTGGTTGACTGCTA-  1087

seq1  AGTACCCTTTAAAGCAGGAAAAAGTGACAGCCCCATGCATAAAATATCTC  1150
      |||||||||| |||||||  |||||||||| ||||||| ||||   ||  
seq2  AGTACCCTTT-AAGCAGG--AAAGTGACAG-CCCATGCCTAAA--TTCCT  1131

seq1  TGACAGATCTGCAGAAGAGCTTTCTCTGCTATGGGTCAAA  1190
      |||||||||||| ||||||||||| ||||||| |||||||
seq2  TGACAGATCTGC-GAAGAGCTTTC-CTGCTAT-GGTCAAA  1168

seq1: chr13_60790060_60790466
seq2: B6Ng01-038L04.g_66_472 (reverse)

seq1  CCCATTCCTCCACCCCTACCTCTCTACATCACAAGGAAGCTCTTCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCTCCACCCCTACCTCTCTACATCACAAGGAAGCTCTTCCTGCC  50

seq1  CAGGCACACCCACAGCCCACGAGACACTTTTCTGGTAGTGGAACCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACCCACAGCCCACGAGACACTTTTCTGGTAGTGGAACCTCTCT  100

seq1  TACCTTTCGTTCCCGTGAGCAGAGTTGTCCGCATGTGGCTATATTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCGTTCCCGTGAGCAGAGTTGTCCGCATGTGGCTATATTTGAAC  150

seq1  ATTAGAGCTGTTGGTGCTGTTCATTTTCAGTGTTGGGTGAGTGACGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGCTGTTGGTGCTGTTCATTTTCAGTGTTGGGTGAGTGACGTAGA  200

seq1  TCCTATCATACACAGCCTCCTTGTCTCTCACAGGCAGATGTGCCTTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCATACACAGCCTCCTTGTCTCTCACAGGCAGATGTGCCTTATGT  250

seq1  ACCTGGAGCTGAACTCTGCTTCGGCAGCCGGCAGTTTCAAATGCACACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAGCTGAACTCTGCTTCGGCAGCCGGCAGTTTCAAATGCACACCA  300

seq1  CGCATCCGTCGCTCACTATGGTTTTTGTCTTCTTCCTGATCCTAGAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCCGTCGCTCACTATGGTTTTTGTCTTCTTCCTGATCCTAGAATGC  350

seq1  TTGCATAGGCACAGTGAGGAATCCCCGGGTGGGACCCCCATAGGAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGGCACAGTGAGGAATCCCCGGGTGGGACCCCCATAGGAGACAT  400

seq1  GGAATTC  407
      |||||||
seq2  GGAATTC  407