BAC Information

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BAC

Clone NameB6Ng01-038L19
Chromosome13 (Build37)
Map Location 115,108,891 - 115,233,940
singlet/doubletdoublet
Overlap geneNdufs4, LOC100040958
Upstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
Downstream geneFst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038L19.bB6Ng01-038L19.g
ACCDH866207DH866208
length1,1031,260
definitionDH866207|Mus musculus domesticus DNA, BAC clone: B6Ng01-038L19, 5' end.DH866208|Mus musculus domesticus DNA, BAC clone: B6Ng01-038L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,232,831 - 115,233,940)(115,108,891 - 115,110,209)
sequence
gaattcatcacagagaagtaaaagattacagcaaggctgtttcacaaatc
ttagccacgaggacaggtagatacaattagatcatcaaaaataataacgg
gctgggagatggctccctgagaaagaacacttgcagagcaagcttaaggg
ccagagttcaaagcccatcatctcccaggtgaaaaaactaggcgctgctt
cgtgcctgtaacactggctcggtgctggtcagcaactggaggattactgg
agtttgtcggccaccaacctaattgtatgttcatgagagatcctgtctca
aagaaataagtagagagtgttggggcaagttgccgtatcttttctttggc
ttccatgctatttcaacagaattggcagatgcagggatggcggctgagaa
gcacggcaaaggaaaagcgacaacagaaacacaaagaaaagcgtgtccca
gaggatcagcaagagcgataatcagaacggtagccttcagtgggtctgtg
cagaagggaacattttcaaataagtattccaagtctactcctaacctcca
agaaagaaaggcttgtaggcaactaagagtgctctgagagcagaaaaaac
ctcccatggaaaggtcagatccatgtttgcgaagtgggccagatgttcta
ggtgatagaaaaggtcaggtcaggaatatagaccactcctgttatcccag
cacttaagagctgaggcaggaggtttgcttctagttaaaggacaagctaa
atattaaagtgaaaccttgcctcaagaaaaaaaaaaggagaaaagagaag
aaggaaggaagtgaataaatatttctcttcaccaatttacaaggatataa
gaaaaaagtgcagattaatataacatcgtaacagtcatactgtttgattg
ttttgttgtgttgtgttttagctctttagggcctaaacgagcatcggttt
gtttcatttacattgaacattagaaatttgcagtcagctatagctgtttt
caaaattcttatgcatgtacttgaagacgcatgacacttttgtctctgca
tgacacttagaggttgtcaagaaaaattgcacatttaaagtttactcaaa
tgt
gaattcagaagaggaagtcatatctcccggagctggaattacaggaaggt
gtgagccacgtgtgatgctaggaagttaactcaggttctctagaagaaca
gttctcacttttaactgctgagccatctttctagcccctagataaagatc
atatttccttgttgtagttgcagcaatgcataaacattcattataagcat
gccataacattaatggatgggcatctacaaatcccacatcaacccacccc
tctattctgtgccaagtttctaatgaatgaaactatgctatgtggctttt
gtttaactgtattaaaagaaacatttaattaatttgttatcttcagaaaa
tatttttctatacttttatactgcgatgcatacatggcaaaataaaacca
atgacgcttacacttatatctgaactcataactactgatgtttcatgtct
ccttaaattctcacagttattgacacatgccccatttaaagctaatattc
aagcaaggagtttctgaatactgaagcccttgtgacttgcccagagattc
actatttttgcctgctaagctgtaagctcctgctgcccagctgagcagga
cagacataaaccagcttggcagctcatgtactcacatacctaatggccac
aaaggctcaaaaattccaagtgcctgcagatgactcccctacacaaactg
atttctcatacttgtaaaatgccctggcattgttgttatcaacctatgca
aacagagttagctagtgacaagaccctgttctctaatgtacattgcaatg
ggttgatgctcccacaccaagattctaatcaaacactgtaactctgcaag
gatctgtgagccctttacactgaatatcttcaataattttctttctctct
caattcatgctgagctacctgggttaaaatgatactattaaagaataatt
atcctaatatgttgaatgatacagtattagctttccatatttaaaaaaat
gattcggtgatcatctgttcccacgtatctgtgtgaactcaacttttttc
ttttacaagataagacagcatgggagttggtgtcaatgcaaaaactcagc
agcttctgcaacaccagataagtctgctggcgctctcttcaaacgaattt
acatcaatgacatatagacctcaagaaatcattccatggccttgcactgc
tgcggtacgctgtagagagtactcgcgaatgcactccacaaaaagccctc
tctcttctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115232831_115233940
seq2: B6Ng01-038L19.b_46_1148 (reverse)

seq1  ACATTTGAGTAAACTTTTAAATGTGCAATTTATCTTTGACAACCTCTAAG  50
      |||||||||||||| |||||||||||||||| || |||||||||||||||
seq2  ACATTTGAGTAAAC-TTTAAATGTGCAATTTTTC-TTGACAACCTCTAAG  48

seq1  TGTCCATGCAGAGACAAAAGTGTCCATGCGTTCTTCAAGTACATGCATAA  100
      ||| ||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TGT-CATGCAGAGACAAAAGTGT-CATGCG-TCTTCAAGTACATGCATAA  95

seq1  GAATTTTGAAAACAGCTATAGCTGACTTGCAAATTTCTAATGTTCAATGT  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAATTTTGAAAACAGCTATAGCTGAC-TGCAAATTTCTAATGTTCAATGT  144

seq1  AAATGAAACAAACCGATGCTCGTTTAGGCCCCTAAAGAGCTAAAACACAA  200
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATGAAACAAACCGATGCTCGTTTAGG-CCCTAAAGAGCTAAAACACAA  193

seq1  CACAACAAAACAATCAAACAGTATGACTGTTACGATGTTATATTAATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAAAACAATCAAACAGTATGACTGTTACGATGTTATATTAATCTG  243

seq1  CACTTTTTTCTTATATCCTTGTAAATTGGTGAAGAGAAATATTTATTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTTCTTATATCCTTGTAAATTGGTGAAGAGAAATATTTATTCAC  293

seq1  TTCCTTCCTTCTTCTCTTTTCTCCTTTTTTTTTTCTTGAGGCAAGGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCTTCTCTTTTCTCCTTTTTTTTTTCTTGAGGCAAGGTTTC  343

seq1  ACTTTAATATTTAGCTTGTCCTTTAACTAGAAGCAAACCTCCTGCCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATATTTAGCTTGTCCTTTAACTAGAAGCAAACCTCCTGCCTCAG  393

seq1  CTCTTAAGTGCTGGGATAACAGGAGTGGTCTATATTCCTGACCTGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGTGCTGGGATAACAGGAGTGGTCTATATTCCTGACCTGACCTT  443

seq1  TTCTATCACCTAGAACATCTGGCCCACTTCGCAAACATGGATCTGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCACCTAGAACATCTGGCCCACTTCGCAAACATGGATCTGACCTT  493

seq1  TCCATGGGAGGTTTTTTCTGCTCTCAGAGCACTCTTAGTTGCCTACAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGAGGTTTTTTCTGCTCTCAGAGCACTCTTAGTTGCCTACAAGC  543

seq1  CTTTCTTTCTTGGAGGTTAGGAGTAGACTTGGAATACTTATTTGAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTGGAGGTTAGGAGTAGACTTGGAATACTTATTTGAAAATG  593

seq1  TTCCCTTCTGCACAGACCCACTGAAGGCTACCGTTCTGATTATCGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCTGCACAGACCCACTGAAGGCTACCGTTCTGATTATCGCTCTT  643

seq1  GCTGATCCTCTGGGACACGCTTTTCTTTGTGTTTCTGTTGTCGCTTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCCTCTGGGACACGCTTTTCTTTGTGTTTCTGTTGTCGCTTTTCC  693

seq1  TTTGCCGTGCTTCTCAGCCGCCATCCCTGCATCTGCCAATTCTGTTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCGTGCTTCTCAGCCGCCATCCCTGCATCTGCCAATTCTGTTGAAA  743

seq1  TAGCATGGAAGCCAAAGAAAAGATACGGCAACTTGCCCCAACACTCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGGAAGCCAAAGAAAAGATACGGCAACTTGCCCCAACACTCTCTA  793

seq1  CTTATTTCTTTGAGACAGGATCTCTCATGAACATACAATTAGGTTGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTTTGAGACAGGATCTCTCATGAACATACAATTAGGTTGGTGG  843

seq1  CCGACAAACTCCAGTAATCCTCCAGTTGCTGACCAGCACCGAGCCAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAAACTCCAGTAATCCTCCAGTTGCTGACCAGCACCGAGCCAGTGT  893

seq1  TACAGGCACGAAGCAGCGCCTAGTTTTTTCACCTGGGAGATGATGGGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCACGAAGCAGCGCCTAGTTTTTTCACCTGGGAGATGATGGGCTT  943

seq1  TGAACTCTGGCCCTTAAGCTTGCTCTGCAAGTGTTCTTTCTCAGGGAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTGGCCCTTAAGCTTGCTCTGCAAGTGTTCTTTCTCAGGGAGCC  993

seq1  ATCTCCCAGCCCGTTATTATTTTTGATGATCTAATTGTATCTACCTGTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAGCCCGTTATTATTTTTGATGATCTAATTGTATCTACCTGTCC  1043

seq1  TCGTGGCTAAGATTTGTGAAACAGCCTTGCTGTAATCTTTTACTTCTCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCTAAGATTTGTGAAACAGCCTTGCTGTAATCTTTTACTTCTCTG  1093

seq1  TGATGAATTC  1110
      ||||||||||
seq2  TGATGAATTC  1103

seq1: chr13_115108891_115110209
seq2: B6Ng01-038L19.g_69_1328

seq1  GAATTCAGAAGAGGAAGTCATATCTCCCGGAGCTGGAATTACAGGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAGGAAGTCATATCTCCCGGAGCTGGAATTACAGGAAGGT  50

seq1  GTGAGCCACGTGTGATGCTAGGAAGTTAACTCAGGTTCTCTAGAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACGTGTGATGCTAGGAAGTTAACTCAGGTTCTCTAGAAGAACA  100

seq1  GTTCTCACTTTTAACTGCTGAGCCATCTTTCTAGCCCCTAGATAAAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACTTTTAACTGCTGAGCCATCTTTCTAGCCCCTAGATAAAGATC  150

seq1  ATATTTCCTTGTTGTAGTTGCAGCAATGCATAAACATTCATTATAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTTGTTGTAGTTGCAGCAATGCATAAACATTCATTATAAGCAT  200

seq1  GCCATAACATTAATGGATGGGCATCTACAAATCCCACATCAACCCACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAACATTAATGGATGGGCATCTACAAATCCCACATCAACCCACCCC  250

seq1  TCTATTCTGTGCCAAGTTTCTAATGAATGAAACTATGCTATGTGGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCTGTGCCAAGTTTCTAATGAATGAAACTATGCTATGTGGCTTTT  300

seq1  GTTTAACTGTATTAAAAGAAACATTTAATTAATTTGTTATCTTCAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACTGTATTAAAAGAAACATTTAATTAATTTGTTATCTTCAGAAAA  350

seq1  TATTTTTCTATACTTTTATACTGCGATGCATACATGGCAAAATAAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTATACTTTTATACTGCGATGCATACATGGCAAAATAAAACCA  400

seq1  ATGACGCTTACACTTATATCTGAACTCATAACTACTGATGTTTCATGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGCTTACACTTATATCTGAACTCATAACTACTGATGTTTCATGTCT  450

seq1  CCTTAAATTCTCACAGTTATTGACACATGCCCCATTTAAAGCTAATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATTCTCACAGTTATTGACACATGCCCCATTTAAAGCTAATATTC  500

seq1  AAGCAAGGAGTTTCTGAATACTGAAGCCCTTGTGACTTGCCCAGAGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGAGTTTCTGAATACTGAAGCCCTTGTGACTTGCCCAGAGATTC  550

seq1  ACTATTTTTGCCTGCTAAGCTGTAAGCTCCTGCTGCCCAGCTGAGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTTGCCTGCTAAGCTGTAAGCTCCTGCTGCCCAGCTGAGCAGGA  600

seq1  CAGACATAAACCAGCTTGGCAGCTCATGTACTCACATACCTAATGGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAAACCAGCTTGGCAGCTCATGTACTCACATACCTAATGGCCAC  650

seq1  AAAGGCTCAAAAATTCCAAGTGCCTGCAGATGACTCCCCTACACAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTCAAAAATTCCAAGTGCCTGCAGATGACTCCCCTACACAAACTG  700

seq1  ATTTCTCATACTTGTAAAATGCCCTGGCATTGTTGTTATCAACCTATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATACTTGTAAAATGCCCTGGCATTGTTGTTATCAACCTATGCA  750

seq1  AACAGAGTTAGCTAGTGACAAGACCCTGTTCTCTAATGTACATTGCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTTAGCTAGTGACAAGACCCTGTTCTCTAATGTACATTGCAATG  800

seq1  GGTTGATGCTCCCACACCAAGATTCTAATCAAACACTGTAACTCTGCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGCTCCCACACCAAGATTCTAATCAAACACTGTAACTCTGCAAG  850

seq1  GATCTGTGAGCCCTTTTACACTGAATATCTTCAATAATTTTCTTTCTCTC  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGAGCCC-TTTACACTGAATATCTTCAATAATTTTCTTTCTCTC  899

seq1  TCAATTCATGCTGAGCTACCTGGGTTAAAAATGAATACTATTAAAGAATA  950
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  TCAATTCATGCTGAGCTACCTGGGTT-AAAATG-ATACTATTAAAGAATA  947

seq1  ATTATCCTAATAATGTTGAATGATACAGTATTAGCTTTCCATATTTAAAA  1000
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  ATTATCCTAAT-ATGTTGAATGATACAGTATTAGCTTTCCATATTT-AAA  995

seq1  AAAATGATTCGGTGATCATCTGTCCCCACGTATCTTGTGTGAACTCAACT  1050
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  AAAATGATTCGGTGATCATCTGTTCCCACGTATC-TGTGTGAACTCAACT  1044

seq1  TTCTTTCTTTTTAACAAAGGGAATAAGGAACAAGCAATGGGAAGTTGGTG  1100
      || ||||||||  ||||     |||||  || ||| ||||| ||||||||
seq2  TT-TTTCTTTT--ACAA----GATAAG--AC-AGC-ATGGG-AGTTGGTG  1082

seq1  TCAAAATGCAGAAAAACCTCCCAGCAAGCTTCTTGCAACCACCCAGGATT  1150
      ||  |||||| |||     | |||| |||||| ||||| ||||   ||| 
seq2  TC--AATGCAAAAA-----CTCAGC-AGCTTC-TGCAA-CACC--AGAT-  1119

seq1  TAGAGTCTTGCTGGCCGCTCTCTTTTCAATACCAGAATTTCACACATTTC  1200
         |||| |||||| |||||||  ||||| ||  ||||||   |||  ||
seq2  --AAGTC-TGCTGG-CGCTCTC--TTCAA-AC--GAATTT---ACA--TC  1155

seq1  AATGACTATTATGACTTCAAAGAATCAAATTTTCATCATTGTCCTTTGTC  1250
      |||||| ||   ||| ||||  |||||   || ||    || ||||   |
seq2  AATGAC-ATATAGACCTCAAGAAATCA---TTCCA----TGGCCTT--GC  1195

seq1  ATCTGCTG-GCTGATCTGTATAAAGGAGTTCTCCAGCATGCACTCCACAC  1299
      | |||||| | |   ||||| |   |||| |||  | |||||||||||| 
seq2  A-CTGCTGCGGTACGCTGTAGA---GAGTACTCGCGAATGCACTCCACA-  1240

seq1  AAAAGCCTCCTTCCTTCTGT  1319
      |||||||  ||  |||||||
seq2  AAAAGCCCTCTCTCTTCTGT  1260